assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001901315.1_ASM190131v1	NZ_CP010226	Escherichia coli strain S1 chromosome, complete genome	1	523474-524296	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCGN	29,29,30	0	0	NA	NA	I-E:I-E:I-E	12,12,13	13	Orphan	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	NA,NA	NA|919aa|up_9|NZ_CP010226.1_510067_512824_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP010226.1_512880_514182_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP010226.1_514229_516464_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP010226.1_516541_516790_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP010226.1_516789_517125_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP010226.1_517195_517987_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP010226.1_518214_519852_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP010226.1_519939_521238_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP010226.1_521297_522170_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP010226.1_522463_523135_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|down_0|NZ_CP010226.1_524445_525558_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_1|NZ_CP010226.1_526894_528373_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_2|NZ_CP010226.1_528399_529677_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_3|NZ_CP010226.1_529995_530781_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|NZ_CP010226.1_530850_532305_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_5|NZ_CP010226.1_532326_533736_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|NZ_CP010226.1_533713_534493_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|NZ_CP010226.1_534489_535350_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|NZ_CP010226.1_535497_536073_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP010226.1_536089_536350_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_001901315.1_ASM190131v1	NZ_CP010226	Escherichia coli strain S1 chromosome, complete genome	2	525618-526256	2,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cas5,cas6e	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG	29,27,27	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Unclear	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	NA,NA	NA|434aa|up_9|NZ_CP010226.1_512880_514182_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP010226.1_514229_516464_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP010226.1_516541_516790_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP010226.1_516789_517125_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP010226.1_517195_517987_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP010226.1_518214_519852_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP010226.1_519939_521238_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP010226.1_521297_522170_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_1|NZ_CP010226.1_522463_523135_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|371aa|up_0|NZ_CP010226.1_524445_525558_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|493aa|down_0|NZ_CP010226.1_526894_528373_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP010226.1_528399_529677_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP010226.1_529995_530781_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP010226.1_530850_532305_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP010226.1_532326_533736_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP010226.1_533713_534493_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP010226.1_534489_535350_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP010226.1_535497_536073_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP010226.1_536089_536350_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP010226.1_536340_537612_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_001901315.1_ASM190131v1	NZ_CP010226	Escherichia coli strain S1 chromosome, complete genome	3	547438-549052	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas5,cas6e,cas1,cas2	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	24,26,26	26	Unclear	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	NA,NA	NA|87aa|up_9|NZ_CP010226.1_536089_536350_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_8|NZ_CP010226.1_536340_537612_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_7|NZ_CP010226.1_537689_538052_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_6|NZ_CP010226.1_538370_540170_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_5|NZ_CP010226.1_540169_541882_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_4|NZ_CP010226.1_541955_542690_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas5|225aa|up_3|NZ_CP010226.1_544852_545527_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP010226.1_545513_546113_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP010226.1_546128_547046_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP010226.1_547047_547332_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP010226.1_549072_550110_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP010226.1_550361_551270_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP010226.1_551271_552699_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP010226.1_552698_553304_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP010226.1_553353_553677_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP010226.1_553870_554182_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP010226.1_554200_554911_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP010226.1_554910_555390_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP010226.1_555386_556436_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP010226.1_556416_557178_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001901315.1_ASM190131v1	NZ_CP010226	Escherichia coli strain S1 chromosome, complete genome	4	1276393-1276534	4	CRISPRCasFinder	no		cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	Orphan	TGTTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCGGATTTGTAG	54	0	0	NA	NA	NA	1	1	Orphan	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	NA,NA	NA|163aa|up_9|NZ_CP010226.1_1266903_1267392_+	PRK10191, PRK10191, putative acyl transferase; Provisional	NA|406aa|up_8|NZ_CP010226.1_1267388_1268606_+	TIGR04015, WcaC, colanic acid biosynthesis glycosyl transferase WcaC	NA|406aa|up_7|NZ_CP010226.1_1268580_1269798_+	TIGR04010, WcaD, putative colanic acid polymerase WcaD	NA|249aa|up_6|NZ_CP010226.1_1269808_1270555_+	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|183aa|up_5|NZ_CP010226.1_1270570_1271119_+	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|374aa|up_4|NZ_CP010226.1_1271145_1272267_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_3|NZ_CP010226.1_1272269_1273235_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|160aa|up_2|NZ_CP010226.1_1273237_1273717_+	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|408aa|up_1|NZ_CP010226.1_1273713_1274937_+	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|479aa|up_0|NZ_CP010226.1_1274939_1276376_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|457aa|down_0|NZ_CP010226.1_1276656_1278027_+	PRK15414, PRK15414, phosphomannomutase	NA|465aa|down_1|NZ_CP010226.1_1278162_1279557_+	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|493aa|down_2|NZ_CP010226.1_1279558_1281037_+	PRK10459, PRK10459, MOP flippase family protein	NA|427aa|down_3|NZ_CP010226.1_1281216_1282497_+	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|407aa|down_4|NZ_CP010226.1_1282493_1283714_+	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|465aa|down_5|NZ_CP010226.1_1283724_1285119_+	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|332aa|down_6|NZ_CP010226.1_1285276_1286272_+	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|298aa|down_7|NZ_CP010226.1_1286514_1287408_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|340aa|down_8|NZ_CP010226.1_1287717_1288737_+	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|339aa|down_9|NZ_CP010226.1_1288755_1289772_+	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins
GCF_001901315.1_ASM190131v1	NZ_CP010226	Escherichia coli strain S1 chromosome, complete genome	5	1724438-1724561	5	CRISPRCasFinder	no	DEDDh	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	NA,NA|30aa|down_7|NZ_CP010226.1_1733451_1733541_+	NA|471aa|up_9|NZ_CP010226.1_1713892_1715305_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP010226.1_1715861_1716071_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP010226.1_1716525_1717152_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP010226.1_1717172_1719275_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP010226.1_1719287_1719926_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP010226.1_1719989_1720658_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP010226.1_1720654_1721440_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP010226.1_1721443_1722256_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP010226.1_1722267_1723872_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP010226.1_1723997_1724303_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP010226.1_1724875_1726132_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP010226.1_1726172_1727546_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP010226.1_1727760_1728402_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP010226.1_1728441_1729590_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP010226.1_1729874_1731086_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP010226.1_1731198_1732131_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP010226.1_1732127_1733153_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP010226.1_1733451_1733541_+	NA	NA|390aa|down_8|NZ_CP010226.1_1733706_1734876_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP010226.1_1735110_1735692_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001901315.1_ASM190131v1	NZ_CP010226	Escherichia coli strain S1 chromosome, complete genome	6	2411058-2411149	6	CRISPRCasFinder	no		cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	NA|70aa|up_9|NZ_CP010226.1_2400133_2400343_-,NA	NA|70aa|up_9|NZ_CP010226.1_2400133_2400343_-	NA	NA|1321aa|up_8|NZ_CP010226.1_2400397_2404360_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP010226.1_2404399_2405038_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP010226.1_2405325_2406417_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP010226.1_2406416_2407109_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP010226.1_2407120_2407507_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP010226.1_2407514_2408315_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP010226.1_2408324_2408915_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP010226.1_2408925_2409420_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP010226.1_2409440_2410769_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP010226.1_2411572_2412169_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP010226.1_2412189_2412417_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP010226.1_2412636_2413878_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|417aa|down_3|NZ_CP010226.1_2414159_2415410_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP010226.1_2415670_2416591_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP010226.1_2416590_2416896_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP010226.1_2416988_2417588_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP010226.1_2417584_2420131_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP010226.1_2420130_2421303_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP010226.1_2421432_2422125_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001901315.1_ASM190131v1	NZ_CP010226	Escherichia coli strain S1 chromosome, complete genome	7	2552764-2552969	7,4,4	CRISPRCasFinder,CRT,PILER-CR	no		cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	NA,NA	NA|431aa|up_9|NZ_CP010226.1_2537887_2539180_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP010226.1_2539270_2540614_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP010226.1_2540624_2541236_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_CP010226.1_2541390_2545380_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP010226.1_2545514_2546009_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP010226.1_2546553_2547519_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP010226.1_2547641_2549408_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP010226.1_2549408_2551130_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP010226.1_2551171_2551876_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP010226.1_2552160_2552379_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP010226.1_2553179_2555456_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP010226.1_2555486_2555807_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP010226.1_2556129_2556354_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP010226.1_2556426_2558373_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP010226.1_2558369_2559485_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP010226.1_2559635_2560592_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP010226.1_2560588_2562247_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP010226.1_2562672_2563368_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP010226.1_2563862_2564762_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP010226.1_2564905_2566558_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_001901315.1_ASM190131v1	NZ_CP010226	Escherichia coli strain S1 chromosome, complete genome	8	2674457-2674601	8	CRISPRCasFinder	no		cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	NA,NA	NA|330aa|up_9|NZ_CP010226.1_2662355_2663345_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP010226.1_2663741_2664650_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP010226.1_2664841_2666863_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP010226.1_2667441_2668119_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP010226.1_2668111_2668867_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP010226.1_2668853_2670008_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP010226.1_2670004_2671045_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP010226.1_2671131_2672421_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP010226.1_2672479_2672956_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP010226.1_2673107_2674391_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|635aa|down_0|NZ_CP010226.1_2674624_2676529_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP010226.1_2676711_2678145_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP010226.1_2678220_2679273_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP010226.1_2679456_2680410_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP010226.1_2680450_2681446_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP010226.1_2681600_2682419_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP010226.1_2682419_2683478_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP010226.1_2683480_2684170_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP010226.1_2684169_2684943_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP010226.1_2685109_2685259_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001901315.1_ASM190131v1	NZ_CP010226	Escherichia coli strain S1 chromosome, complete genome	9	3208986-3209082	9	CRISPRCasFinder	no	DEDDh	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	NA,NA	NA|134aa|up_9|NZ_CP010226.1_3199069_3199471_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_8|NZ_CP010226.1_3199528_3200773_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_7|NZ_CP010226.1_3200864_3201323_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_6|NZ_CP010226.1_3201583_3203041_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_5|NZ_CP010226.1_3204066_3204519_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_CP010226.1_3204528_3204927_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_CP010226.1_3204929_3205223_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_CP010226.1_3205274_3206330_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_CP010226.1_3206400_3207186_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP010226.1_3207130_3208870_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP010226.1_3209085_3209583_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_CP010226.1_3209758_3210532_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP010226.1_3210717_3210978_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_CP010226.1_3210980_3211259_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_CP010226.1_3211414_3212155_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_CP010226.1_3212125_3212893_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_CP010226.1_3213098_3213677_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_CP010226.1_3213916_3216361_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_CP010226.1_3216403_3216877_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_CP010226.1_3217030_3217801_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_001901315.1_ASM190131v1	NZ_CP010226	Escherichia coli strain S1 chromosome, complete genome	10	3415242-3415383	10	CRISPRCasFinder	no		cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas5,cas6e,cas1,cas2,c2c9_V-U4,cas3,DEDDh,DinG,RT,WYL,csa3	NA,NA	NA|96aa|up_9|NZ_CP010226.1_3404233_3404521_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP010226.1_3404517_3405804_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP010226.1_3405854_3406796_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP010226.1_3406810_3407581_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP010226.1_3408053_3409568_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP010226.1_3409598_3410741_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP010226.1_3410869_3412087_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP010226.1_3412160_3413714_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP010226.1_3413822_3414608_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP010226.1_3414613_3415204_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP010226.1_3415412_3415808_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP010226.1_3416069_3419291_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP010226.1_3419308_3420457_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP010226.1_3420912_3421734_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP010226.1_3421900_3422815_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP010226.1_3422880_3423831_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP010226.1_3423832_3424282_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP010226.1_3424406_3424901_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP010226.1_3424900_3427717_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP010226.1_3427759_3428701_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
