assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001901215.1_ASM190121v1	NZ_CP010221	Escherichia coli strain M19 chromosome, complete genome	1	360133-360893	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,10	12	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	NA|121aa|up_3|NZ_CP010221.1_357029_357392_-,NA	NA|745aa|up_9|NZ_CP010221.1_349965_352200_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_CP010221.1_352277_352526_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_CP010221.1_352525_352861_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_CP010221.1_352931_353723_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_CP010221.1_353950_355588_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_CP010221.1_355675_356974_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|NZ_CP010221.1_357029_357392_-	NA	NA|302aa|up_2|NZ_CP010221.1_357427_358333_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP010221.1_358346_358949_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP010221.1_359121_359793_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|185aa|down_0|NZ_CP010221.1_361531_362086_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|121aa|down_1|NZ_CP010221.1_362125_362488_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP010221.1_362806_364606_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP010221.1_364605_366318_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP010221.1_366391_367126_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_5|NZ_CP010221.1_367390_367543_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|down_6|NZ_CP010221.1_367736_370436_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_7|NZ_CP010221.1_370533_372096_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|down_8|NZ_CP010221.1_372092_372632_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_9|NZ_CP010221.1_372643_373699_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_001901215.1_ASM190121v1	NZ_CP010221	Escherichia coli strain M19 chromosome, complete genome	2	376395-376911	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	NA,NA	NA|245aa|up_9|NZ_CP010221.1_366391_367126_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP010221.1_367390_367543_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP010221.1_367736_370436_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP010221.1_370533_372096_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|NZ_CP010221.1_372092_372632_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP010221.1_372643_373699_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP010221.1_373709_374456_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP010221.1_374437_375088_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP010221.1_375084_376005_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP010221.1_376004_376298_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP010221.1_376992_378030_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP010221.1_378281_379190_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP010221.1_379191_380619_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP010221.1_380618_381224_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP010221.1_381273_381597_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP010221.1_381790_382102_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP010221.1_382120_382831_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP010221.1_382830_383310_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP010221.1_383306_384356_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP010221.1_384336_385098_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001901215.1_ASM190121v1	NZ_CP010221	Escherichia coli strain M19 chromosome, complete genome	3	1590898-1591021	3	CRISPRCasFinder	no	DEDDh	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	NA,NA|30aa|down_7|NZ_CP010221.1_1599917_1600007_+	NA|471aa|up_9|NZ_CP010221.1_1580351_1581764_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP010221.1_1582320_1582530_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP010221.1_1582985_1583612_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP010221.1_1583632_1585735_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP010221.1_1585747_1586386_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP010221.1_1586449_1587118_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP010221.1_1587114_1587900_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP010221.1_1587903_1588716_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP010221.1_1588727_1590332_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP010221.1_1590457_1590763_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP010221.1_1591335_1592592_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP010221.1_1592632_1594006_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP010221.1_1594220_1594862_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP010221.1_1594901_1596050_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP010221.1_1596340_1597552_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP010221.1_1597664_1598597_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP010221.1_1598593_1599619_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP010221.1_1599917_1600007_+	NA	NA|390aa|down_8|NZ_CP010221.1_1600172_1601342_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP010221.1_1601487_1602069_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001901215.1_ASM190121v1	NZ_CP010221	Escherichia coli strain M19 chromosome, complete genome	4	2218587-2218678	4	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	NA|70aa|up_9|NZ_CP010221.1_2207837_2208047_-,NA|186aa|down_1|NZ_CP010221.1_2222157_2222715_+,NA|94aa|down_2|NZ_CP010221.1_2222716_2222998_+,NA|72aa|down_3|NZ_CP010221.1_2222997_2223213_+,NA|108aa|down_5|NZ_CP010221.1_2223655_2223979_+,NA|68aa|down_6|NZ_CP010221.1_2225280_2225484_+,NA|258aa|down_8|NZ_CP010221.1_2227880_2228654_+	NA|70aa|up_9|NZ_CP010221.1_2207837_2208047_-	NA	NA|1321aa|up_8|NZ_CP010221.1_2208101_2212064_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP010221.1_2212103_2212742_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP010221.1_2213029_2214121_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP010221.1_2214120_2214813_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP010221.1_2214824_2215211_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP010221.1_2215218_2216019_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP010221.1_2216028_2216619_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP010221.1_2216629_2217124_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP010221.1_2217144_2218473_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|183aa|down_0|NZ_CP010221.1_2219713_2220262_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|186aa|down_1|NZ_CP010221.1_2222157_2222715_+	NA	NA|94aa|down_2|NZ_CP010221.1_2222716_2222998_+	NA	NA|72aa|down_3|NZ_CP010221.1_2222997_2223213_+	NA	NA|96aa|down_4|NZ_CP010221.1_2223209_2223497_+	pfam13392, HNH_3, HNH endonuclease	NA|108aa|down_5|NZ_CP010221.1_2223655_2223979_+	NA	NA|68aa|down_6|NZ_CP010221.1_2225280_2225484_+	NA	NA|708aa|down_7|NZ_CP010221.1_2225592_2227716_+	COG3941, COG3941, Mu-like prophage protein [General function prediction only]	NA|258aa|down_8|NZ_CP010221.1_2227880_2228654_+	NA	NA|548aa|down_9|NZ_CP010221.1_2228673_2230317_-	pfam07508, Recombinase, Recombinase
GCF_001901215.1_ASM190121v1	NZ_CP010221	Escherichia coli strain M19 chromosome, complete genome	5	2534407-2534551	5	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	NA,NA	NA|330aa|up_9|NZ_CP010221.1_2522305_2523295_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP010221.1_2523691_2524600_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP010221.1_2524791_2526813_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP010221.1_2527391_2528069_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP010221.1_2528061_2528817_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP010221.1_2528803_2529958_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP010221.1_2529954_2530995_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP010221.1_2531081_2532371_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP010221.1_2532429_2532906_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP010221.1_2533057_2534341_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP010221.1_2534574_2536836_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP010221.1_2537018_2538452_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP010221.1_2538527_2539580_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP010221.1_2539763_2540717_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP010221.1_2540757_2541753_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP010221.1_2541907_2542726_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP010221.1_2542726_2543785_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP010221.1_2543787_2544477_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP010221.1_2544476_2545250_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP010221.1_2545416_2545566_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001901215.1_ASM190121v1	NZ_CP010221	Escherichia coli strain M19 chromosome, complete genome	6	4928274-4928391	6	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4,RT,PrimPol	NA,NA|55aa|down_0|NZ_CP010221.1_4928464_4928629_-	NA|115aa|up_9|NZ_CP010221.1_4915995_4916340_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP010221.1_4916528_4917467_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP010221.1_4917565_4918555_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP010221.1_4918576_4919908_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP010221.1_4919933_4921142_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP010221.1_4921175_4923470_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP010221.1_4923483_4923873_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP010221.1_4923944_4925309_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP010221.1_4925583_4926915_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP010221.1_4926942_4928253_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP010221.1_4928464_4928629_-	NA	NA|234aa|down_1|NZ_CP010221.1_4928651_4929353_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP010221.1_4929457_4930354_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP010221.1_4930404_4930761_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP010221.1_4931002_4931368_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP010221.1_4931660_4932647_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|131aa|down_6|NZ_CP010221.1_4932716_4933109_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP010221.1_4933294_4933594_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP010221.1_4933583_4933988_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP010221.1_4933990_4934296_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
