assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001901105.1_ASM190110v1	NZ_CP010196	Escherichia coli strain M9 chromosome, complete genome	1	931359-931450	1	CRISPRCasFinder	no		PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TCCAACGGTTGCCCAACGGTTGTCCA	26	0	0	NA	NA	NA	1	1	Orphan	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|57aa|up_8|NZ_CP010196.1_926495_926666_-,NA|81aa|up_4|NZ_CP010196.1_928170_928413_-,NA|100aa|up_3|NZ_CP010196.1_928423_928723_-,NA|134aa|down_4|NZ_CP010196.1_934512_934914_+	NA|236aa|up_9|NZ_CP010196.1_925779_926487_-	COG4712, COG4712, Uncharacterized protein conserved in bacteria [Function unknown]	NA|57aa|up_8|NZ_CP010196.1_926495_926666_-	NA	NA|51aa|up_7|NZ_CP010196.1_926741_926894_-	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein	NA|44aa|up_6|NZ_CP010196.1_926878_927010_-	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|323aa|up_5|NZ_CP010196.1_927034_928003_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|81aa|up_4|NZ_CP010196.1_928170_928413_-	NA	NA|100aa|up_3|NZ_CP010196.1_928423_928723_-	NA	NA|217aa|up_2|NZ_CP010196.1_929494_930145_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|62aa|up_1|NZ_CP010196.1_930225_930411_+	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro	NA|93aa|up_0|NZ_CP010196.1_930519_930798_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|479aa|down_0|NZ_CP010196.1_931860_933297_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|147aa|down_1|NZ_CP010196.1_933372_933813_+	pfam05772, NinB, NinB protein	NA|176aa|down_2|NZ_CP010196.1_933809_934337_+	TIGR01712, DNA_N-6-adenine-methyltransferase_M	NA|59aa|down_3|NZ_CP010196.1_934333_934510_+	pfam05322, NinE, NINE Protein	NA|134aa|down_4|NZ_CP010196.1_934512_934914_+	NA	NA|70aa|down_5|NZ_CP010196.1_934873_935083_+	pfam05810, NinF, NinF protein	NA|241aa|down_6|NZ_CP010196.1_935075_935798_+	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown]	NA|97aa|down_7|NZ_CP010196.1_935797_936088_+	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|121aa|down_8|NZ_CP010196.1_936084_936447_+	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|63aa|down_9|NZ_CP010196.1_936443_936632_+	pfam06322, Phage_NinH, Phage NinH protein
GCF_001901105.1_ASM190110v1	NZ_CP010196	Escherichia coli strain M9 chromosome, complete genome	2	2825188-2825704	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	TypeI-E	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP010196.1_2817000_2817762_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010196.1_2817742_2818792_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010196.1_2818788_2819268_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010196.1_2819267_2819978_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010196.1_2819996_2820308_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010196.1_2820501_2820825_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010196.1_2820874_2821480_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010196.1_2821479_2822907_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010196.1_2822908_2823817_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010196.1_2824068_2825106_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010196.1_2825800_2826094_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP010196.1_2826093_2827014_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010196.1_2827010_2827661_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010196.1_2827642_2828389_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010196.1_2828399_2829455_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP010196.1_2829466_2830006_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP010196.1_2830002_2831565_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010196.1_2831662_2834362_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010196.1_2834555_2834708_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010196.1_2834972_2835707_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001901105.1_ASM190110v1	NZ_CP010196	Escherichia coli strain M9 chromosome, complete genome	3	2841206-2842027	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,12	13	TypeI-E	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|121aa|down_3|NZ_CP010196.1_2844767_2845130_+	cas7|352aa|up_9|NZ_CP010196.1_2828399_2829455_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|up_8|NZ_CP010196.1_2829466_2830006_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|up_7|NZ_CP010196.1_2830002_2831565_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|NZ_CP010196.1_2831662_2834362_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_5|NZ_CP010196.1_2834555_2834708_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_4|NZ_CP010196.1_2834972_2835707_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP010196.1_2835780_2837493_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP010196.1_2837492_2839292_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP010196.1_2839610_2839973_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|185aa|up_0|NZ_CP010196.1_2840012_2840567_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010196.1_2842366_2843038_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP010196.1_2843210_2843813_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_CP010196.1_2843826_2844732_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_CP010196.1_2844767_2845130_+	NA	NA|433aa|down_4|NZ_CP010196.1_2845185_2846484_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_CP010196.1_2846571_2848209_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_CP010196.1_2848436_2849228_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_CP010196.1_2849298_2849634_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_CP010196.1_2849633_2849882_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_CP010196.1_2849959_2852194_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
GCF_001901105.1_ASM190110v1	NZ_CP010196	Escherichia coli strain M9 chromosome, complete genome	4	3156265-3156381	3	PILER-CR	no	cas3	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CTCAGTTCGATTTTCGAACCCGGTGTTTT	29	1	1	3156348-3156363	NZ_CP010197.1_130300-130315	NA	2	2	Unclear	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|176aa|up_1|NZ_CP010196.1_3153923_3154451_-,NA|95aa|down_0|NZ_CP010196.1_3157209_3157494_-	NA|186aa|up_9|NZ_CP010196.1_3145950_3146508_-	pfam11072, DUF2859, Protein of unknown function (DUF2859)	NA|213aa|up_8|NZ_CP010196.1_3146497_3147136_-	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|248aa|up_7|NZ_CP010196.1_3147148_3147892_-	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family	NA|247aa|up_6|NZ_CP010196.1_3147905_3148646_-	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	NA|221aa|up_5|NZ_CP010196.1_3148642_3149305_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|324aa|up_4|NZ_CP010196.1_3149462_3150434_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|156aa|up_3|NZ_CP010196.1_3150454_3150922_-	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|685aa|up_2|NZ_CP010196.1_3151788_3153843_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|176aa|up_1|NZ_CP010196.1_3153923_3154451_-	NA	NA|235aa|up_0|NZ_CP010196.1_3154498_3155203_-	pfam08900, DUF1845, Domain of unknown function (DUF1845)	NA|95aa|down_0|NZ_CP010196.1_3157209_3157494_-	NA	NA|197aa|down_1|NZ_CP010196.1_3157483_3158074_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|550aa|down_2|NZ_CP010196.1_3158599_3160249_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|451aa|down_3|NZ_CP010196.1_3160263_3161616_-	TIGR00665, DnaB, replicative DNA helicase	NA|291aa|down_4|NZ_CP010196.1_3161946_3162819_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|422aa|down_5|NZ_CP010196.1_3163144_3164410_+	PRK09692, PRK09692, integrase; Provisional	NA|500aa|down_6|NZ_CP010196.1_3164729_3166229_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|247aa|down_7|NZ_CP010196.1_3166380_3167121_-	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|770aa|down_8|NZ_CP010196.1_3167758_3170068_+	pfam13208, TerB_N, TerB N-terminal domain	NA|439aa|down_9|NZ_CP010196.1_3170071_3171388_+	pfam10923, DUF2791, P-loop Domain of unknown function (DUF2791)
GCF_001901105.1_ASM190110v1	NZ_CP010196	Escherichia coli strain M9 chromosome, complete genome	5	4258542-4258674	4	PILER-CR	no		PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|156aa|up_9|NZ_CP010196.1_4249783_4250251_+,NA	NA|156aa|up_9|NZ_CP010196.1_4249783_4250251_+	NA	NA|60aa|up_8|NZ_CP010196.1_4250349_4250529_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|160aa|up_7|NZ_CP010196.1_4250549_4251029_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP010196.1_4251220_4253083_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP010196.1_4253075_4253606_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP010196.1_4253713_4255045_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP010196.1_4255103_4255391_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP010196.1_4255387_4256674_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP010196.1_4256724_4257666_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP010196.1_4257680_4258451_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP010196.1_4258924_4260439_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP010196.1_4260469_4261612_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP010196.1_4261740_4262958_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|262aa|down_3|NZ_CP010196.1_4264693_4265479_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_4|NZ_CP010196.1_4265484_4266075_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_5|NZ_CP010196.1_4266193_4266589_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_6|NZ_CP010196.1_4266848_4270070_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_7|NZ_CP010196.1_4270087_4271236_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_8|NZ_CP010196.1_4271691_4272513_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_9|NZ_CP010196.1_4272679_4273594_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional
