assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001901065.1_ASM190106v1	NZ_CP010186	Escherichia coli strain M6 chromosome, complete genome	1	931360-931451	1	CRISPRCasFinder	no		PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TCCAACGGTTGCCCAACGGTTGTCCA	26	0	0	NA	NA	NA	1	1	Orphan	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|57aa|up_8|NZ_CP010186.1_926496_926667_-,NA|81aa|up_4|NZ_CP010186.1_928171_928414_-,NA|100aa|up_3|NZ_CP010186.1_928424_928724_-,NA|134aa|down_4|NZ_CP010186.1_934513_934915_+	NA|236aa|up_9|NZ_CP010186.1_925780_926488_-	COG4712, COG4712, Uncharacterized protein conserved in bacteria [Function unknown]	NA|57aa|up_8|NZ_CP010186.1_926496_926667_-	NA	NA|51aa|up_7|NZ_CP010186.1_926742_926895_-	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein	NA|44aa|up_6|NZ_CP010186.1_926879_927011_-	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|323aa|up_5|NZ_CP010186.1_927035_928004_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|81aa|up_4|NZ_CP010186.1_928171_928414_-	NA	NA|100aa|up_3|NZ_CP010186.1_928424_928724_-	NA	NA|217aa|up_2|NZ_CP010186.1_929495_930146_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|62aa|up_1|NZ_CP010186.1_930226_930412_+	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro	NA|93aa|up_0|NZ_CP010186.1_930520_930799_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|479aa|down_0|NZ_CP010186.1_931861_933298_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|147aa|down_1|NZ_CP010186.1_933373_933814_+	pfam05772, NinB, NinB protein	NA|176aa|down_2|NZ_CP010186.1_933810_934338_+	TIGR01712, DNA_N-6-adenine-methyltransferase_M	NA|59aa|down_3|NZ_CP010186.1_934334_934511_+	pfam05322, NinE, NINE Protein	NA|134aa|down_4|NZ_CP010186.1_934513_934915_+	NA	NA|70aa|down_5|NZ_CP010186.1_934874_935084_+	pfam05810, NinF, NinF protein	NA|241aa|down_6|NZ_CP010186.1_935076_935799_+	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown]	NA|97aa|down_7|NZ_CP010186.1_935798_936089_+	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|121aa|down_8|NZ_CP010186.1_936085_936448_+	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|63aa|down_9|NZ_CP010186.1_936444_936633_+	pfam06322, Phage_NinH, Phage NinH protein
GCF_001901065.1_ASM190106v1	NZ_CP010186	Escherichia coli strain M6 chromosome, complete genome	2	2825590-2826167	1,1,2	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,8,8	9	TypeI-E	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP010186.1_2817463_2818225_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010186.1_2818205_2819255_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010186.1_2819251_2819731_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010186.1_2819730_2820441_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010186.1_2820459_2820771_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010186.1_2820964_2821288_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010186.1_2821337_2821943_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010186.1_2821942_2823370_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010186.1_2823371_2824280_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010186.1_2824531_2825569_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010186.1_2826263_2826557_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP010186.1_2826556_2827477_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010186.1_2827473_2828124_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010186.1_2828105_2828852_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010186.1_2828862_2829918_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP010186.1_2829929_2830469_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP010186.1_2830465_2832028_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010186.1_2832125_2834825_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010186.1_2835018_2835171_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010186.1_2835435_2836170_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001901065.1_ASM190106v1	NZ_CP010186	Escherichia coli strain M6 chromosome, complete genome	3	2841669-2842490	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,12	13	TypeI-E	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|121aa|down_3|NZ_CP010186.1_2845230_2845593_+	cas7|352aa|up_9|NZ_CP010186.1_2828862_2829918_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|up_8|NZ_CP010186.1_2829929_2830469_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|up_7|NZ_CP010186.1_2830465_2832028_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|NZ_CP010186.1_2832125_2834825_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_5|NZ_CP010186.1_2835018_2835171_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_4|NZ_CP010186.1_2835435_2836170_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP010186.1_2836243_2837956_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP010186.1_2837955_2839755_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP010186.1_2840073_2840436_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|185aa|up_0|NZ_CP010186.1_2840475_2841030_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010186.1_2842829_2843501_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP010186.1_2843673_2844276_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_CP010186.1_2844289_2845195_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_CP010186.1_2845230_2845593_+	NA	NA|433aa|down_4|NZ_CP010186.1_2845648_2846947_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_CP010186.1_2847034_2848672_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_CP010186.1_2848899_2849691_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_CP010186.1_2849761_2850097_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_CP010186.1_2850096_2850345_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_CP010186.1_2850422_2852657_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
GCF_001901065.1_ASM190106v1	NZ_CP010186	Escherichia coli strain M6 chromosome, complete genome	4	3156947-3157063	3	PILER-CR	no	cas3	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CTCAGTTCGATTTTCGAACCCGGTGTTTT	29	1	1	3157030-3157045	NZ_CP010187.1_130299-130314	NA	2	2	Unclear	PrimPol,RT,DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|176aa|up_1|NZ_CP010186.1_3154497_3155025_-,NA|95aa|down_0|NZ_CP010186.1_3157891_3158176_-	NA|186aa|up_9|NZ_CP010186.1_3146524_3147082_-	pfam11072, DUF2859, Protein of unknown function (DUF2859)	NA|213aa|up_8|NZ_CP010186.1_3147071_3147710_-	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|248aa|up_7|NZ_CP010186.1_3147722_3148466_-	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family	NA|247aa|up_6|NZ_CP010186.1_3148479_3149220_-	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	NA|221aa|up_5|NZ_CP010186.1_3149216_3149879_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|324aa|up_4|NZ_CP010186.1_3150036_3151008_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|156aa|up_3|NZ_CP010186.1_3151028_3151496_-	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|685aa|up_2|NZ_CP010186.1_3152362_3154417_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|176aa|up_1|NZ_CP010186.1_3154497_3155025_-	NA	NA|235aa|up_0|NZ_CP010186.1_3155072_3155777_-	pfam08900, DUF1845, Domain of unknown function (DUF1845)	NA|95aa|down_0|NZ_CP010186.1_3157891_3158176_-	NA	NA|197aa|down_1|NZ_CP010186.1_3158165_3158756_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|550aa|down_2|NZ_CP010186.1_3159281_3160931_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|451aa|down_3|NZ_CP010186.1_3160945_3162298_-	TIGR00665, DnaB, replicative DNA helicase	NA|291aa|down_4|NZ_CP010186.1_3162628_3163501_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|422aa|down_5|NZ_CP010186.1_3163826_3165092_+	PRK09692, PRK09692, integrase; Provisional	NA|500aa|down_6|NZ_CP010186.1_3165411_3166911_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|247aa|down_7|NZ_CP010186.1_3167062_3167803_-	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|770aa|down_8|NZ_CP010186.1_3168440_3170750_+	pfam13208, TerB_N, TerB N-terminal domain	NA|439aa|down_9|NZ_CP010186.1_3170753_3172070_+	pfam10923, DUF2791, P-loop Domain of unknown function (DUF2791)
