assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	1	234830-234974	1	CRISPRCasFinder	no		csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA|72aa|up_9|NZ_CP010237.1_229003_229219_+,NA|205aa|up_6|NZ_CP010237.1_230085_230700_+,NA|113aa|up_5|NZ_CP010237.1_230993_231332_+,NA|56aa|up_3|NZ_CP010237.1_231872_232040_+,NA	NA|72aa|up_9|NZ_CP010237.1_229003_229219_+	NA	NA|74aa|up_8|NZ_CP010237.1_229317_229539_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|84aa|up_7|NZ_CP010237.1_229535_229787_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|205aa|up_6|NZ_CP010237.1_230085_230700_+	NA	NA|113aa|up_5|NZ_CP010237.1_230993_231332_+	NA	NA|143aa|up_4|NZ_CP010237.1_231360_231789_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_3|NZ_CP010237.1_231872_232040_+	NA	NA|73aa|up_2|NZ_CP010237.1_232079_232298_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP010237.1_232275_233346_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP010237.1_233480_234764_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP010237.1_234997_237259_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP010237.1_237441_238875_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP010237.1_238950_240003_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP010237.1_240186_241140_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP010237.1_241180_242176_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP010237.1_242330_243149_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP010237.1_243149_244208_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP010237.1_244210_244900_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP010237.1_244899_245673_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP010237.1_245839_245989_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	2	463954-464050	2	CRISPRCasFinder	no		csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA,NA	NA|231aa|up_9|NZ_CP010237.1_455749_456442_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP010237.1_456661_457204_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP010237.1_457674_458541_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP010237.1_458542_458755_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP010237.1_458862_459384_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP010237.1_459419_460805_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP010237.1_460978_461473_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP010237.1_461475_462198_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP010237.1_462315_462825_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP010237.1_462821_463889_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP010237.1_464083_464977_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP010237.1_464973_465789_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP010237.1_465799_467059_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|350aa|down_3|NZ_CP010237.1_469051_470101_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_4|NZ_CP010237.1_470122_471358_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_5|NZ_CP010237.1_471368_472154_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_6|NZ_CP010237.1_472381_473527_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_7|NZ_CP010237.1_473548_474850_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_8|NZ_CP010237.1_474906_476268_-	PRK08044, PRK08044, allantoinase AllB	NA|485aa|down_9|NZ_CP010237.1_476327_477782_-	PRK11375, PRK11375, putative allantoin permease
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	3	606365-606509	3	CRISPRCasFinder	no		csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Orphan	TTTTGTAGGCCTGATAAGACGCGACAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA,NA|28aa|down_1|NZ_CP010237.1_608555_608639_-	NA|357aa|up_9|NZ_CP010237.1_591503_592574_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP010237.1_592666_593248_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP010237.1_593252_595070_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP010237.1_595225_596599_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP010237.1_596674_597994_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP010237.1_598400_599696_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP010237.1_599753_600443_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP010237.1_600632_601835_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP010237.1_601831_604978_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP010237.1_605103_606288_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|304aa|down_0|NZ_CP010237.1_607566_608478_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_1|NZ_CP010237.1_608555_608639_-	NA	NA|95aa|down_2|NZ_CP010237.1_609124_609409_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_3|NZ_CP010237.1_609480_610158_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_4|NZ_CP010237.1_610415_610607_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_5|NZ_CP010237.1_610656_611181_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_6|NZ_CP010237.1_611357_611822_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_7|NZ_CP010237.1_611941_612751_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_8|NZ_CP010237.1_612767_613883_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|107aa|down_9|NZ_CP010237.1_613984_614305_-	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	4	798173-798269	4	CRISPRCasFinder	no	WYL	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA,NA	NA|134aa|up_9|NZ_CP010237.1_788256_788658_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_8|NZ_CP010237.1_788715_789960_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_7|NZ_CP010237.1_790051_790510_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_6|NZ_CP010237.1_790770_792228_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_5|NZ_CP010237.1_793253_793706_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_CP010237.1_793715_794114_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_CP010237.1_794116_794410_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_CP010237.1_794461_795517_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_CP010237.1_795587_796373_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP010237.1_796317_798057_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP010237.1_798272_798770_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_CP010237.1_798945_799719_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP010237.1_799904_800165_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|247aa|down_3|NZ_CP010237.1_800592_801333_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_4|NZ_CP010237.1_801303_802071_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_5|NZ_CP010237.1_802276_802855_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_6|NZ_CP010237.1_803094_805539_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_7|NZ_CP010237.1_805581_806055_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_8|NZ_CP010237.1_806208_806979_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|379aa|down_9|NZ_CP010237.1_807019_808156_-	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	5	1077458-1077599	5	CRISPRCasFinder	no		csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA,NA	NA|96aa|up_9|NZ_CP010237.1_1066449_1066737_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP010237.1_1066733_1068020_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP010237.1_1068070_1069012_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP010237.1_1069026_1069797_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP010237.1_1070269_1071784_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP010237.1_1071814_1072957_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP010237.1_1073085_1074303_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP010237.1_1074376_1075930_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP010237.1_1076038_1076824_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP010237.1_1076829_1077420_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP010237.1_1077628_1078024_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP010237.1_1078285_1081507_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP010237.1_1081524_1082673_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP010237.1_1083128_1083950_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|317aa|down_4|NZ_CP010237.1_1085096_1086047_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_5|NZ_CP010237.1_1086048_1086498_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_6|NZ_CP010237.1_1086622_1087117_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_7|NZ_CP010237.1_1087116_1089933_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_8|NZ_CP010237.1_1089975_1090917_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|73aa|down_9|NZ_CP010237.1_1090924_1091143_-	pfam10837, DUF2575, Protein of unknown function (DUF2575)
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	6	2898902-2899357	1,6,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP010237.1_2897611_2897752_-,NA	NA|434aa|up_9|NZ_CP010237.1_2888308_2889610_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP010237.1_2889657_2891892_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP010237.1_2891969_2892218_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP010237.1_2892217_2892553_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP010237.1_2892623_2893415_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP010237.1_2893642_2895280_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP010237.1_2895367_2896666_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP010237.1_2896725_2897598_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP010237.1_2897611_2897752_-	NA	NA|224aa|up_0|NZ_CP010237.1_2897890_2898562_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP010237.1_2899995_2901474_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|403aa|down_1|NZ_CP010237.1_2901500_2902709_-	cd06174, MFS, Major Facilitator Superfamily	NA|485aa|down_2|NZ_CP010237.1_2903949_2905404_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_3|NZ_CP010237.1_2905425_2906835_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_CP010237.1_2906812_2907592_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|NZ_CP010237.1_2907588_2908449_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_CP010237.1_2908596_2909172_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_CP010237.1_2909188_2909449_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_CP010237.1_2909439_2910711_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|down_9|NZ_CP010237.1_2910788_2911151_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	7	2917589-2917861	2,7,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA,NA	NA|287aa|up_9|NZ_CP010237.1_2907588_2908449_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_CP010237.1_2908596_2909172_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_CP010237.1_2909188_2909449_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_CP010237.1_2909439_2910711_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_5|NZ_CP010237.1_2910788_2911151_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP010237.1_2911469_2913269_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP010237.1_2913268_2914981_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP010237.1_2915054_2915789_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP010237.1_2916053_2916206_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP010237.1_2916398_2917511_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP010237.1_2917942_2918980_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP010237.1_2919231_2920140_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP010237.1_2920141_2921569_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP010237.1_2921568_2922174_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP010237.1_2922223_2922547_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP010237.1_2922740_2923052_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP010237.1_2923070_2923781_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP010237.1_2923780_2924260_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP010237.1_2924256_2925306_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP010237.1_2925286_2926048_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	8	3417997-3418114	8	CRISPRCasFinder	no		csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA,NA	NA|62aa|up_9|NZ_CP010237.1_3407282_3407468_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP010237.1_3407480_3408380_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP010237.1_3408572_3409763_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP010237.1_3409759_3411019_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP010237.1_3411008_3412637_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP010237.1_3412909_3414268_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP010237.1_3414272_3415349_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP010237.1_3415811_3416462_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP010237.1_3416515_3416770_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP010237.1_3416769_3417900_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP010237.1_3418133_3420419_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP010237.1_3421114_3424867_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP010237.1_3424994_3425717_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP010237.1_3425863_3428491_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP010237.1_3428639_3430328_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP010237.1_3430324_3430948_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1505aa|down_6|NZ_CP010237.1_3430971_3435486_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP010237.1_3435486_3437136_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP010237.1_3437140_3437917_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP010237.1_3437990_3439175_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	9	4097550-4097673	9	CRISPRCasFinder	no	DEDDh	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP010237.1_4106569_4106659_+	NA|471aa|up_9|NZ_CP010237.1_4087004_4088417_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP010237.1_4088973_4089183_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP010237.1_4089637_4090264_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP010237.1_4090284_4092387_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP010237.1_4092399_4093038_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP010237.1_4093101_4093770_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP010237.1_4093766_4094552_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP010237.1_4094555_4095368_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP010237.1_4095379_4096984_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP010237.1_4097109_4097415_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP010237.1_4097987_4099244_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP010237.1_4099284_4100658_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP010237.1_4100872_4101514_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP010237.1_4101553_4102702_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP010237.1_4102992_4104204_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP010237.1_4104316_4105249_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP010237.1_4105245_4106271_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP010237.1_4106569_4106659_+	NA	NA|390aa|down_8|NZ_CP010237.1_4106824_4107994_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP010237.1_4108228_4108810_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	10	4741058-4741149	10	CRISPRCasFinder	no		csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP010237.1_4730133_4730343_-,NA	NA|70aa|up_9|NZ_CP010237.1_4730133_4730343_-	NA	NA|1321aa|up_8|NZ_CP010237.1_4730397_4734360_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP010237.1_4734399_4735038_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP010237.1_4735325_4736417_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP010237.1_4736416_4737109_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP010237.1_4737120_4737507_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP010237.1_4737514_4738315_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP010237.1_4738324_4738915_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP010237.1_4738925_4739420_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP010237.1_4739440_4740769_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP010237.1_4741572_4742169_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP010237.1_4742189_4742417_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP010237.1_4742454_4743696_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP010237.1_4743988_4745245_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP010237.1_4745505_4746426_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP010237.1_4746425_4746731_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP010237.1_4746882_4747482_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP010237.1_4747478_4750025_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP010237.1_4750024_4751197_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP010237.1_4751326_4752019_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001900985.1_ASM190098v1	NZ_CP010237	Escherichia coli strain S43 chromosome, complete genome	11	4882659-4882864	11,3,3	CRISPRCasFinder,CRT,PILER-CR	no		csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAACG	28,28,29	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	csa3,TnsE_C,RT,WYL,DEDDh,cas3,PD-DExK,c2c9_V-U4,DinG	NA,NA	NA|431aa|up_9|NZ_CP010237.1_4867782_4869075_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP010237.1_4869165_4870509_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP010237.1_4870519_4871131_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1330aa|up_6|NZ_CP010237.1_4871285_4875275_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP010237.1_4875409_4875904_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP010237.1_4876448_4877414_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP010237.1_4877536_4879303_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP010237.1_4879303_4881025_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP010237.1_4881066_4881771_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP010237.1_4882055_4882274_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP010237.1_4883074_4885351_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP010237.1_4885381_4885702_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP010237.1_4886024_4886249_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP010237.1_4886321_4888268_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP010237.1_4888264_4889380_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP010237.1_4889530_4890487_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP010237.1_4890483_4892142_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP010237.1_4892566_4893262_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP010237.1_4893756_4894656_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP010237.1_4894799_4896452_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
