assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900965.1_ASM190096v1	NZ_CP010236	Escherichia coli strain S42 chromosome, complete genome	1	40012-40105	1	CRISPRCasFinder	no		DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	CGATGTAACAACGCGCACAGATCAGTCCCC	30	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA|310aa|up_9|NZ_CP010236.1_32890_33820_-,NA|326aa|down_5|NZ_CP010236.1_44812_45790_+	NA|310aa|up_9|NZ_CP010236.1_32890_33820_-	NA	NA|143aa|up_8|NZ_CP010236.1_33946_34375_-	pfam05130, FlgN, FlgN protein	NA|93aa|up_7|NZ_CP010236.1_34387_34666_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|246aa|up_6|NZ_CP010236.1_34746_35484_-	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|112aa|up_5|NZ_CP010236.1_35565_35901_+	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|144aa|up_4|NZ_CP010236.1_35903_36335_+	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|238aa|up_3|NZ_CP010236.1_36334_37048_+	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|401aa|up_2|NZ_CP010236.1_37132_38335_+	PRK06803, flgE, flagellar basal body protein FlaE	NA|246aa|up_1|NZ_CP010236.1_38334_39072_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|262aa|up_0|NZ_CP010236.1_39150_39936_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|222aa|down_0|NZ_CP010236.1_40207_40873_+	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|367aa|down_1|NZ_CP010236.1_40887_41988_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|100aa|down_2|NZ_CP010236.1_41987_42287_+	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|459aa|down_3|NZ_CP010236.1_42475_43852_+	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|310aa|down_4|NZ_CP010236.1_43866_44796_+	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|326aa|down_5|NZ_CP010236.1_44812_45790_+	NA	NA|281aa|down_6|NZ_CP010236.1_45844_46687_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|305aa|down_7|NZ_CP010236.1_47172_48087_+	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|439aa|down_8|NZ_CP010236.1_48292_49609_+	PRK08032, fliD, flagellar capping protein; Reviewed	NA|131aa|down_9|NZ_CP010236.1_49631_50024_+	pfam02561, FliS, Flagellar protein FliS
GCF_001900965.1_ASM190096v1	NZ_CP010236	Escherichia coli strain S42 chromosome, complete genome	2	330960-331056	2	CRISPRCasFinder	no		DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA	NA|485aa|up_9|NZ_CP010236.1_317326_318781_+	PRK11375, PRK11375, putative allantoin permease	NA|454aa|up_8|NZ_CP010236.1_318840_320202_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_7|NZ_CP010236.1_320258_321560_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_6|NZ_CP010236.1_321581_322727_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_5|NZ_CP010236.1_322855_323641_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_4|NZ_CP010236.1_323651_324887_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_3|NZ_CP010236.1_324908_325958_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_2|NZ_CP010236.1_326274_327942_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_1|NZ_CP010236.1_327951_329211_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|298aa|up_0|NZ_CP010236.1_330032_330926_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP010236.1_331120_332188_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP010236.1_332184_332694_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP010236.1_332811_333534_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP010236.1_333536_334031_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP010236.1_334204_335590_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP010236.1_335625_336147_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP010236.1_336254_336467_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP010236.1_336468_337335_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|231aa|down_8|NZ_CP010236.1_338577_339270_+	PRK15195, PRK15195, molecular chaperone FimC	NA|870aa|down_9|NZ_CP010236.1_339300_341910_+	PRK15198, PRK15198, outer membrane usher protein FimD
GCF_001900965.1_ASM190096v1	NZ_CP010236	Escherichia coli strain S42 chromosome, complete genome	3	618301-618440	3	CRISPRCasFinder	no		DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTAC	47	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA	NA|50aa|up_9|NZ_CP010236.1_607280_607430_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_CP010236.1_607596_608370_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_CP010236.1_608369_609059_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_CP010236.1_609061_610120_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_CP010236.1_610120_610939_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_CP010236.1_611093_612089_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_CP010236.1_612129_613083_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_CP010236.1_613266_614319_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_CP010236.1_614394_615828_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_CP010236.1_616010_618272_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_CP010236.1_618505_619789_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|159aa|down_1|NZ_CP010236.1_619940_620417_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_2|NZ_CP010236.1_620475_621765_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_3|NZ_CP010236.1_621851_622892_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|385aa|down_4|NZ_CP010236.1_622888_624043_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_5|NZ_CP010236.1_624029_624785_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|226aa|down_6|NZ_CP010236.1_624777_625455_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|674aa|down_7|NZ_CP010236.1_626033_628055_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|303aa|down_8|NZ_CP010236.1_628246_629155_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|330aa|down_9|NZ_CP010236.1_629551_630541_+	PRK00164, moaA, GTP 3',8-cyclase MoaA
GCF_001900965.1_ASM190096v1	NZ_CP010236	Escherichia coli strain S42 chromosome, complete genome	4	2713665-2714671	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,16,9	16	TypeI-E	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA	NA|254aa|up_9|NZ_CP010236.1_2705477_2706239_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010236.1_2706219_2707269_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010236.1_2707265_2707745_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010236.1_2707744_2708455_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010236.1_2708473_2708785_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010236.1_2708978_2709302_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010236.1_2709351_2709957_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010236.1_2709956_2711384_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010236.1_2711385_2712294_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010236.1_2712545_2713583_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010236.1_2714767_2715061_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP010236.1_2715060_2715981_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010236.1_2715977_2716628_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010236.1_2716609_2717356_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010236.1_2717366_2718422_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP010236.1_2718433_2718970_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP010236.1_2718966_2720529_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010236.1_2720626_2723326_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010236.1_2723518_2723671_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010236.1_2723935_2724670_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001900965.1_ASM190096v1	NZ_CP010236	Escherichia coli strain S42 chromosome, complete genome	5	2740370-2741191	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Unclear	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA|47aa|down_1|NZ_CP010236.1_2742340_2742481_+	NA|424aa|up_9|NZ_CP010236.1_2729013_2730285_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP010236.1_2730275_2730536_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP010236.1_2730552_2731128_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP010236.1_2731275_2732136_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP010236.1_2732132_2732912_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP010236.1_2732889_2734299_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP010236.1_2734320_2735775_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP010236.1_2735844_2736630_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP010236.1_2736948_2738226_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010236.1_2738252_2739731_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010236.1_2741530_2742202_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP010236.1_2742340_2742481_+	NA	NA|433aa|down_2|NZ_CP010236.1_2743426_2744725_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP010236.1_2744812_2746450_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP010236.1_2746677_2747469_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP010236.1_2747539_2747875_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP010236.1_2747874_2748123_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP010236.1_2748200_2750435_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP010236.1_2750482_2751784_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP010236.1_2751840_2754597_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
