The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010228	Escherichia coli strain S3 chromosome, complete genome	4632368	586127	593267	4632368		Escherichia_phage(83.33%)	6	NA	NA
WP_001278994.1|586127_586766_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
WP_000590397.1|586762_588025_-	3-oxo-tetronate kinase	NA	A0A077SLJ7	Escherichia_phage	61.4	1.3e-135
WP_000847985.1|588021_588930_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
WP_001297141.1|589125_589893_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
WP_001141340.1|589943_590600_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	8.0e-49
WP_001272924.1|590705_593267_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.7e-30
>prophage 2
NZ_CP010228	Escherichia coli strain S3 chromosome, complete genome	4632368	669489	746765	4632368	tail,tRNA,integrase,capsid,portal,transposase,terminase	Salmonella_phage(34.21%)	79	687250:687266	750286:750302
WP_085947772.1|669489_670703_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	57.1	8.3e-100
WP_073507259.1|670842_671955_+	His-Xaa-Ser system radical SAM maturase HxsC	NA	NA	NA	NA	NA
WP_001624497.1|671951_672587_+	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA	NA
WP_073507260.1|672605_674213_+	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA	NA
WP_000248204.1|674369_674582_-	hypothetical protein	NA	A0A1B5FPC6	Escherichia_phage	77.3	2.5e-20
WP_073507261.1|674709_675606_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000936491.1|675602_676499_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_073507262.1|676488_678045_-	recombinase family protein	NA	A0A0A7RTP8	Clostridium_phage	30.3	4.2e-19
WP_001625698.1|678327_679557_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	86.1	3.9e-206
WP_000162574.1|680300_680783_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
WP_000600190.1|680914_681391_+	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA	NA
WP_001117838.1|681380_681671_+	RnfH family protein	NA	NA	NA	NA	NA
WP_001203437.1|681732_682074_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_000880910.1|682222_683884_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001059169.1|683969_684848_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_001300112.1|684970_685561_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001287917.1|685595_686201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010723175.1|686323_687610_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
687250:687266	attL	GGTACAGCGCGGCAATG	NA	NA	NA	NA
WP_001338897.1|687630_688422_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_073507263.1|688588_689950_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000256450.1|690086_690335_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000043335.1|690353_690902_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000264777.1|690932_691700_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000065253.1|691741_692089_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000972010.1|692233_692452_-	DNA-binding transcriptional regulator	NA	Q37973	Salmonella_virus	100.0	1.2e-38
WP_001580942.1|692527_693697_-	phage late control D family protein	NA	Q6K1G4	Salmonella_virus	95.4	5.8e-207
WP_001407015.1|693693_694179_-|tail	phage tail protein	tail	O80317	Escherichia_phage	94.4	2.6e-81
WP_073507264.1|694192_696637_-|tail	phage tail tape measure protein	tail	A0A0M3UL85	Salmonella_phage	79.9	5.8e-302
WP_000763319.1|696629_696749_-|tail	GpE family phage tail protein	tail	O80316	Escherichia_phage	94.9	9.7e-14
WP_001029730.1|696781_697117_-|tail	phage tail assembly protein	tail	A0A0M4S5P8	Salmonella_phage	98.2	8.8e-52
WP_073507266.1|697755_698505_-|terminase	terminase endonuclease subunit	terminase	Q6K1I5	Salmonella_virus	94.8	1.5e-123
WP_001394639.1|698508_699576_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M4R4W2	Salmonella_phage	99.4	2.6e-198
WP_021532438.1|699652_700507_-|capsid	GPO family capsid scaffolding protein	capsid	A0A218M4L9	Erwinia_phage	93.3	3.1e-149
WP_073507267.1|700672_702442_+|terminase	terminase ATPase subunit family protein	terminase	A0A218M4M1	Erwinia_phage	98.8	0.0e+00
WP_000517961.1|702443_703490_+|portal	phage portal protein	portal	A0A2I8TV74	Erwinia_phage	94.8	9.8e-190
WP_073507268.1|703520_704246_-	hypothetical protein	NA	S5W9H2	Leptospira_phage	26.6	2.9e-07
WP_073507269.1|704242_705061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_073507529.1|705212_705482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001407038.1|705512_705704_-	hypothetical protein	NA	S4TRZ0	Salmonella_phage	95.2	1.4e-25
WP_073507271.1|705702_706134_+	hypothetical protein	NA	S4TUD6	Salmonella_phage	95.1	4.4e-72
WP_001222154.1|706200_706434_-	DinI family protein	NA	A0A0M4S6H1	Salmonella_phage	98.7	8.0e-36
WP_000232651.1|706437_706620_-	hypothetical protein	NA	A0A0M5M1G5	Salmonella_phage	98.3	4.5e-26
WP_073507272.1|706733_708863_-	replication endonuclease	NA	Q6K1F3	Salmonella_virus	90.9	0.0e+00
WP_000752601.1|708957_709179_-	TraR/DksA family transcriptional regulator	NA	A0A0M4S5Q7	Salmonella_phage	97.3	2.4e-34
WP_001246238.1|709178_709406_-	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	98.7	2.0e-31
WP_073507273.1|709473_709812_-	DUF5347 domain-containing protein	NA	A0A218M4I7	Erwinia_phage	93.8	4.7e-53
WP_000920167.1|709775_709976_-	DUF2724 domain-containing protein	NA	Q6K1F7	Salmonella_virus	95.5	1.1e-30
WP_073507274.1|709983_710493_-	phage regulatory CII family protein	NA	A0A0M4QWN1	Salmonella_phage	95.9	2.6e-87
WP_001278195.1|710525_710897_-	hypothetical protein	NA	A0A0M4R4X7	Salmonella_phage	98.4	2.3e-61
WP_001394632.1|711018_711879_+	phage repressor protein CI	NA	Q6K1G0	Salmonella_virus	97.9	2.4e-162
WP_001394631.1|711887_712226_+	DUF2511 domain-containing protein	NA	A0A0M3ULF8	Salmonella_phage	92.0	4.3e-54
WP_001394630.1|712248_713289_+|integrase	site-specific integrase	integrase	A0A0M4S6G4	Salmonella_phage	90.1	2.5e-185
WP_001394629.1|713405_714215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000589828.1|714669_715152_-	OmpA family protein	NA	NA	NA	NA	NA
WP_073507275.1|715167_716394_-	diguanylate cyclase DgcN	NA	NA	NA	NA	NA
WP_001212391.1|716383_716902_-	YfiR family protein	NA	NA	NA	NA	NA
WP_000976004.1|717051_717417_-	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
WP_001168054.1|717626_718697_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.2	5.3e-90
WP_073507276.1|718707_719829_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_000200120.1|719871_721032_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_001386991.1|721130_721178_-	pheA operon leader peptide PheL	NA	NA	NA	NA	NA
WP_000178456.1|721281_721623_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_000197686.1|721893_722631_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000079112.1|722765_723746_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000040149.1|723742_724474_+	polyphenol oxidase	NA	NA	NA	NA	NA
WP_001235102.1|724603_727177_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.3	2.6e-127
WP_073507277.1|733045_734344_+	alpha-ketoglutarate permease	NA	Q6JIH2	Burkholderia_virus	32.1	2.2e-45
WP_001300818.1|734340_734664_-	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000949265.1|734709_736065_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_000082964.1|736178_738839_-	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_001343689.1|738870_739569_-|tRNA	tRNA-uridine aminocarboxypropyltransferase	tRNA	NA	NA	NA	NA
WP_001098726.1|739637_740057_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	38.5	2.8e-15
WP_000997403.1|740263_741301_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001262716.1|741348_742038_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	48.8	7.1e-56
WP_000627807.1|742342_742726_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	72.0	1.4e-32
WP_000189207.1|742781_743369_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000365855.1|743471_744353_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000219193.1|744561_745896_-	ATP-dependent RNA helicase SrmB	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.8	2.9e-45
WP_001298974.1|746027_746765_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
750286:750302	attR	GGTACAGCGCGGCAATG	NA	NA	NA	NA
>prophage 3
NZ_CP010228	Escherichia coli strain S3 chromosome, complete genome	4632368	1199446	1208888	4632368		Enterobacteria_phage(85.71%)	10	NA	NA
WP_000569329.1|1199446_1200373_+	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
WP_000783120.1|1200377_1201109_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_001216961.1|1201089_1201197_-	protein YohO	NA	NA	NA	NA	NA
WP_073507303.1|1201256_1201988_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.0	6.3e-111
WP_001295431.1|1202209_1203895_+	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_000598641.1|1203891_1204611_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295430.1|1204657_1205128_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_001295429.1|1205168_1205630_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
WP_001349936.1|1205754_1207755_-	SWIM zinc finger family protein	NA	Q9EYF6	Enterobacteria_phage	96.6	0.0e+00
WP_001292769.1|1207751_1208888_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.4	3.2e-162
>prophage 4
NZ_CP010228	Escherichia coli strain S3 chromosome, complete genome	4632368	1252239	1260635	4632368	tRNA	Enterobacteria_phage(33.33%)	9	NA	NA
WP_021523176.1|1252239_1252785_+	hypothetical protein	NA	Q858S7	Enterobacteria_phage	98.9	1.1e-96
WP_073507307.1|1253986_1255150_+	phage late control D family protein	NA	U5N3V4	Enterobacteria_phage	99.0	7.0e-205
WP_000468308.1|1255231_1255450_+	prophage transcriptional regulator OgrK	NA	A0A0F7LDQ9	Escherichia_phage	100.0	4.7e-38
WP_000476011.1|1255722_1257084_-|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	100.0	1.1e-217
WP_001220181.1|1257186_1257483_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_001307279.1|1257484_1257781_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_000929408.1|1257989_1258322_-	YegP family protein	NA	NA	NA	NA	NA
WP_000137877.1|1258512_1259235_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.6	3.7e-31
WP_000675150.1|1259231_1260635_-	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	29.0	3.0e-32
>prophage 5
NZ_CP010228	Escherichia coli strain S3 chromosome, complete genome	4632368	1752440	1795686	4632368	protease,tail,lysis,transposase	Enterobacteria_phage(28.57%)	54	NA	NA
WP_001260855.1|1752440_1753262_-|protease	serine protease	protease	NA	NA	NA	NA
WP_000233090.1|1753361_1753445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000743951.1|1753537_1753873_-	acid shock protein	NA	NA	NA	NA	NA
WP_073507356.1|1754269_1755523_-	MFS transporter	NA	NA	NA	NA	NA
WP_001019530.1|1755629_1756523_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000225276.1|1756657_1757878_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA	NA
WP_000919226.1|1758002_1758698_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_001315626.1|1758650_1759943_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA	NA
WP_000148710.1|1760101_1760716_-	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	36.3	8.7e-29
WP_000526492.1|1760758_1761613_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
WP_000213028.1|1761614_1762232_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	9.5e-76
WP_001340362.1|1762242_1764666_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	48.6	1.7e-208
WP_028131501.1|1764726_1767153_-	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.0	7.7e-214
WP_001307224.1|1767351_1767657_-	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
WP_001321287.1|1767764_1768475_+	YnfC family lipoprotein	NA	NA	NA	NA	NA
WP_001138581.1|1768477_1769038_-	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
WP_000705211.1|1769072_1769414_-	DUF1283 family protein	NA	NA	NA	NA	NA
WP_000598292.1|1769548_1769875_+	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
WP_001295394.1|1770080_1771295_+	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	29.0	1.4e-46
WP_000836082.1|1771306_1772326_+	Zn-dependent oxidoreductase	NA	E3SJ82	Synechococcus_phage	25.9	9.7e-17
WP_001389342.1|1772383_1772512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001083297.1|1774535_1774727_-|lysis	lysis protein YdfD	lysis	NA	NA	NA	NA
WP_000854559.1|1774723_1774912_-	cell division inhibition protein DicB	NA	NA	NA	NA	NA
WP_085947772.1|1775552_1776766_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	57.1	8.3e-100
WP_001301033.1|1778164_1778497_-	protein FlxA	NA	NA	NA	NA	NA
WP_001326990.1|1778699_1779005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000534858.1|1779029_1779269_+	type II toxin-antitoxin system antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
WP_000323025.1|1779268_1779556_+	type II toxin-antitoxin system mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
WP_000813254.1|1779627_1779783_+	type I toxin-antitoxin system toxin HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
WP_000980994.1|1779999_1780251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012304870.1|1780317_1780596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001265198.1|1780597_1781647_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
WP_073507359.1|1781660_1782413_+	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	92.4	6.0e-133
WP_120795389.1|1782690_1782780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000087756.1|1782834_1783047_-	cold shock-like protein CspF	NA	NA	NA	NA	NA
WP_000066484.1|1783347_1783563_+	cold shock-like protein CspB	NA	A0A1W6JNX5	Morganella_phage	76.5	3.4e-25
WP_000839590.1|1784316_1784532_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	94.4	1.1e-31
WP_000189916.1|1784536_1784848_+	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
WP_001092971.1|1784844_1785378_+	lysozyme	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
WP_001071769.1|1785374_1785872_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
WP_000066495.1|1786234_1786447_+	cold shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
WP_071524604.1|1786457_1786646_+	cold-shock protein	NA	NA	NA	NA	NA
WP_120795388.1|1786648_1786714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001309517.1|1786793_1786949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001019606.1|1787120_1787294_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_000373090.1|1787445_1787856_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
WP_001368374.1|1787913_1788147_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	84.1	2.5e-21
WP_000453611.1|1788535_1789081_+	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.3	2.3e-94
WP_072315226.1|1789306_1790254_+|tail	tail fiber protein	tail	K7PHC9	Enterobacteria_phage	72.7	4.4e-40
WP_000885611.1|1790253_1790829_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	95.3	6.5e-103
WP_000078177.1|1790926_1791517_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000836768.1|1791833_1792067_-	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_120795384.1|1792135_1792249_-	hypothetical protein	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_073507361.1|1794225_1795686_+	mannitol dehydrogenase family protein	NA	G8DCZ3	Micromonas_pusilla_virus	30.1	8.6e-43
>prophage 6
NZ_CP010228	Escherichia coli strain S3 chromosome, complete genome	4632368	2008303	2021783	4632368	tRNA,integrase	Escherichia_phage(73.33%)	17	1998963:1998976	2017929:2017942
1998963:1998976	attL	GCGCAGCAACATCA	NA	NA	NA	NA
WP_001141106.1|2008303_2008681_-	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	88.8	1.6e-54
WP_073507388.1|2008696_2008891_-	DUF1627 domain-containing protein	NA	A0A0U2SAW4	Escherichia_phage	87.3	5.7e-19
WP_001169151.1|2009034_2009190_+	YdaF family protein	NA	M4QQ57	Salicola_phage	55.3	6.1e-08
WP_073507389.1|2009186_2009675_-	superinfection exclusion B family protein	NA	NA	NA	NA	NA
WP_000560223.1|2010116_2010338_+	killing protein KilR	NA	A0A0U2RTC4	Escherichia_phage	98.6	2.0e-36
WP_001352098.1|2010337_2010508_+	conserved protein, Rac prophage	NA	A0A0U2SHB5	Escherichia_phage	71.4	3.6e-17
WP_000632297.1|2010582_2010858_+	protein RacC	NA	A0A0U2QW85	Escherichia_phage	96.7	1.4e-42
WP_073507390.1|2010959_2013560_+	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	63.5	5.1e-248
WP_000166319.1|2013552_2014362_+	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.5	8.8e-106
WP_053889809.1|2014418_2014613_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	NA	A0A0U2QQP4	Escherichia_phage	95.3	5.8e-32
WP_000276809.1|2014605_2014815_+	double-strand break reduction protein RcbA	NA	A0A0U2QL97	Escherichia_phage	98.4	6.1e-27
WP_000079604.1|2014893_2015109_+	excisionase XisR	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
WP_000040852.1|2015110_2016346_+|integrase	site-specific integrase	integrase	A0A0U2JGI6	Escherichia_phage	98.8	5.5e-240
WP_001157407.1|2016397_2017333_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
WP_000123751.1|2017461_2018835_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	8.6e-53
2017929:2017942	attR	GCGCAGCAACATCA	NA	NA	NA	NA
WP_000387388.1|2019312_2020296_-	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_000628065.1|2020550_2021783_+	diguanylate cyclase DgcM	NA	A0A127AWB9	Bacillus_phage	39.5	3.1e-17
>prophage 7
NZ_CP010228	Escherichia coli strain S3 chromosome, complete genome	4632368	2525228	2534752	4632368	integrase	Salmonella_phage(90.0%)	14	2519547:2519560	2534827:2534840
2519547:2519560	attL	ATGGGTTTTTTGTT	NA	NA	NA	NA
WP_063090871.1|2525228_2525417_-	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	88.7	5.7e-24
WP_127699595.1|2525697_2526030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073507421.1|2526026_2526485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073507422.1|2526556_2528941_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	92.9	0.0e+00
WP_001595554.1|2528937_2529795_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	97.9	4.6e-161
WP_000752612.1|2529791_2530019_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	98.7	2.3e-35
WP_001244221.1|2530018_2530252_-	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	77.9	7.8e-23
WP_000963473.1|2530319_2530661_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	99.1	4.6e-56
WP_000956182.1|2530624_2530825_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	98.5	7.1e-33
WP_000460883.1|2530832_2531342_-	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.2	1.3e-86
WP_000188448.1|2531374_2531596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024257448.1|2531741_2532623_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	36.8	1.9e-32
WP_072679119.1|2532634_2533612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000290925.1|2533699_2534752_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	2.7e-107
2534827:2534840	attR	ATGGGTTTTTTGTT	NA	NA	NA	NA
>prophage 8
NZ_CP010228	Escherichia coli strain S3 chromosome, complete genome	4632368	2842890	2855019	4632368	tail,lysis	Enterobacteria_phage(70.59%)	22	NA	NA
WP_000885574.1|2842890_2843475_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	93.8	1.2e-101
WP_016232484.1|2843746_2843953_-	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	94.1	9.3e-28
WP_001403557.1|2844238_2844649_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	99.3	9.4e-72
WP_000738492.1|2844939_2845233_+	serum resistance lipoprotein Bor	NA	K7PL54	Enterobacteria_phage	100.0	4.0e-48
WP_001228695.1|2845323_2845506_-|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	98.3	2.9e-17
WP_000075162.1|2845722_2846220_-	lysozyme RrrD	NA	A5LH83	Enterobacteria_phage	98.8	4.9e-91
WP_000839596.1|2846219_2846435_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_000737266.1|2847008_2848106_+	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	76.5	2.2e-155
WP_001204791.1|2848295_2848679_-	antitermination protein QuuD	NA	A0A088CD47	Shigella_phage	83.3	4.4e-55
WP_000971068.1|2848764_2848905_-	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	67.4	5.5e-08
WP_001099700.1|2848901_2849264_-	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	96.5	7.3e-60
WP_000774488.1|2849260_2849551_-	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	94.8	4.3e-47
WP_000224919.1|2849543_2849714_-	NinE family protein	NA	NA	NA	NA	NA
WP_001053033.1|2849713_2850169_-	DNA base-flipping protein YbcN	NA	I6PD71	Cronobacter_phage	67.5	3.7e-61
WP_001309322.1|2850165_2850267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000068668.1|2850365_2851295_-	hypothetical protein	NA	A0A1R3Y6Z6	Salmonella_virus	40.0	3.0e-57
WP_001567061.1|2851499_2851817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000709069.1|2851928_2853455_-	recombinase family protein	NA	Q3HQV4	Burkholderia_phage	27.7	6.1e-31
WP_032139864.1|2853512_2853620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001070442.1|2853711_2854044_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA	NA
WP_000145915.1|2854111_2854414_-	protein ren	NA	A0A0N6WES4	Escherichia_phage	95.7	1.1e-42
WP_073507434.1|2854410_2855019_-	Replication protein P	NA	K7P6G2	Enterobacteria_phage	100.0	5.2e-111
>prophage 9
NZ_CP010228	Escherichia coli strain S3 chromosome, complete genome	4632368	3086595	3155060	4632368	tail,plate,integrase,transposase,holin	Shigella_phage(31.82%)	57	3119427:3119443	3152506:3152522
WP_000399648.1|3086595_3087576_+|transposase	IS110-like element IS621 family transposase	transposase	NA	NA	NA	NA
WP_000083455.1|3087749_3089168_-	DUF1116 domain-containing protein	NA	NA	NA	NA	NA
WP_000111830.1|3089167_3090715_-	acyl-CoA synthetase FdrA	NA	NA	NA	NA	NA
WP_001325908.1|3090704_3091568_-	DUF2877 domain-containing protein	NA	NA	NA	NA	NA
WP_000023631.1|3091607_3092213_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_001013868.1|3092470_3092968_+	DUF1097 domain-containing protein	NA	NA	NA	NA	NA
WP_001084399.1|3093059_3093992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000146391.1|3094033_3095122_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_023277736.1|3095263_3099247_-	autotransporter adhesin EhaA	NA	A0A2L1IV18	Escherichia_phage	38.0	9.3e-124
WP_000131044.1|3099819_3101853_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	27.4	3.4e-21
WP_001351501.1|3101981_3102569_+	transcriptional regulator BetI	NA	NA	NA	NA	NA
WP_000089063.1|3102582_3104055_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001159103.1|3104068_3105757_+|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.2	4.8e-61
WP_000370398.1|3106864_3107560_-	lactate utilization protein C	NA	NA	NA	NA	NA
WP_000023906.1|3107552_3108980_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_001102119.1|3108990_3109710_-	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_000339593.1|3110236_3111091_-	DNA-binding transcriptional regulator RclR	NA	NA	NA	NA	NA
WP_001046314.1|3111316_3112642_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.8	2.5e-113
WP_000474084.1|3112750_3112987_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001299021.1|3112998_3113592_+	reactive chlorine species resistance protein RclC	NA	NA	NA	NA	NA
WP_001299025.1|3113751_3114621_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.7	9.3e-53
WP_001379507.1|3114869_3115727_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001462259.1|3115847_3120101_-	intimin-like adhesin FdeC	NA	NA	NA	NA	NA
3119427:3119443	attL	CGGCGATTTTTTCCAGC	NA	NA	NA	NA
WP_000662258.1|3121216_3121318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000803999.1|3121680_3121944_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000866436.1|3121943_3122084_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
WP_001147277.1|3122118_3122346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001296902.1|3123168_3123711_+	ECP biosynthesis operon DNA-binding transcriptional regulator EcpR	NA	NA	NA	NA	NA
WP_000730974.1|3123785_3124373_+	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA	NA
WP_000716394.1|3124430_3125099_+	fimbrial chaperone EcpB	NA	NA	NA	NA	NA
WP_073507443.1|3125124_3127650_+	fimbrial usher EcpC	NA	NA	NA	NA	NA
WP_001323478.1|3127639_3129283_+	fimbrial adhesin EcpD	NA	NA	NA	NA	NA
WP_001305432.1|3129251_3129962_+	fimbrial chaperone EcpE	NA	NA	NA	NA	NA
WP_032144344.1|3130274_3130604_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_000070693.1|3131881_3132571_+	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_000643332.1|3132567_3133524_+	aldehyde oxidoreductase FAD-binding subunit PaoB	NA	NA	NA	NA	NA
WP_000667026.1|3133520_3135719_+	aldehyde oxidoreductase molybdenum-binding subunit PaoC	NA	A0A0P0I429	Acinetobacter_phage	25.8	2.5e-38
WP_000121330.1|3135728_3136685_+	molybdenum cofactor insertion chaperone PaoD	NA	NA	NA	NA	NA
WP_001111349.1|3136663_3137074_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000343528.1|3137594_3140771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000834399.1|3141490_3143380_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_000905004.1|3143413_3143605_-	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	72.1	1.5e-16
WP_073507444.1|3143634_3144045_+	hypothetical protein	NA	F1BUP1	Erwinia_phage	41.5	4.6e-10
WP_000782985.1|3144041_3144461_+|tail	tail assembly chaperone	tail	M1SNQ2	Escherichia_phage	65.5	5.0e-36
WP_073507445.1|3144432_3144828_-|tail	tail fiber assembly protein	tail	A0A0M4S6V4	Salmonella_phage	57.8	1.0e-14
WP_073507446.1|3144836_3145493_-	hypothetical protein	NA	M1FN94	Enterobacteria_phage	67.4	3.4e-71
WP_073507447.1|3145496_3146081_-	YmfQ family protein	NA	O22003	Shigella_phage	99.0	1.6e-112
WP_073507448.1|3146071_3147130_-|plate	baseplate J/gp47 family protein	plate	M1FQW3	Enterobacteria_phage	98.6	1.1e-199
WP_073507537.1|3147116_3147440_-	phage GP46 family protein	NA	U5P0R9	Shigella_phage	98.9	4.4e-48
WP_000081287.1|3147607_3148432_+	DUF2303 family protein	NA	U5P439	Shigella_phage	100.0	6.0e-150
WP_073507449.1|3148559_3149096_+	5'-deoxynucleotidase	NA	U5P0T3	Shigella_phage	99.4	2.8e-100
WP_001242749.1|3149086_3149449_+	phage protein	NA	U5P092	Shigella_phage	100.0	2.1e-67
WP_000206732.1|3149448_3149754_+	hypothetical protein	NA	U5P0J0	Shigella_phage	100.0	6.8e-51
WP_000051887.1|3149980_3151144_+|integrase	site-specific integrase	integrase	U5P434	Shigella_phage	100.0	2.4e-229
WP_000893252.1|3151348_3152602_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	3.4e-96
3152506:3152522	attR	CGGCGATTTTTTCCAGC	NA	NA	NA	NA
WP_001285288.1|3152613_3153717_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
WP_000749881.1|3154004_3155060_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.9	7.7e-118
>prophage 10
NZ_CP010228	Escherichia coli strain S3 chromosome, complete genome	4632368	3461234	3469226	4632368	tail,holin,lysis	Enterobacteria_phage(46.15%)	14	NA	NA
WP_032361617.1|3461234_3461822_-|tail	tail fiber assembly protein	tail	K7PMC4	Enterobacterial_phage	56.1	5.3e-60
WP_032361618.1|3461821_3462580_-	hypothetical protein	NA	U5P0I1	Shigella_phage	98.1	9.9e-51
WP_032361632.1|3463328_3463679_-	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	95.7	1.5e-62
WP_000699783.1|3463744_3463948_-	hypothetical protein	NA	A0A1W6JPG4	Morganella_phage	52.9	4.9e-13
WP_021543580.1|3464065_3464440_-	hypothetical protein	NA	M1FPD9	Enterobacteria_phage	96.0	1.8e-61
WP_073507470.1|3464478_3464922_-|lysis	lysis protein	lysis	M1FJ79	Enterobacteria_phage	94.6	1.3e-71
WP_021543581.1|3464918_3465395_-	glycoside hydrolase family protein	NA	K7PKV2	Enterobacteria_phage	94.3	6.2e-83
WP_001120502.1|3465398_3465734_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	100.0	5.2e-60
WP_001406331.1|3466000_3466747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001204747.1|3466797_3467160_-	antitermination protein Q	NA	A5LH77	Enterobacteria_phage	95.0	2.5e-60
WP_149025953.1|3467177_3467501_-	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	100.0	3.5e-37
WP_001250269.1|3467490_3467670_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
WP_000515829.1|3467845_3468403_-	protein YmfL	NA	S5FXP0	Shigella_phage	96.2	1.1e-96
WP_149025954.1|3468605_3469226_+	DUF551 domain-containing protein	NA	A5LH60	Enterobacteria_phage	92.2	2.0e-113
