assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900655.1_ASM190065v1	NZ_CP010143	Escherichia coli strain D4 chromosome, complete genome	1	272163-272296	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	TACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA|448aa|up_7|NZ_CP010143.1_263443_264787_+,NA|77aa|up_6|NZ_CP010143.1_264773_265004_+,NA	NA|198aa|up_9|NZ_CP010143.1_262130_262724_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_8|NZ_CP010143.1_262868_263321_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|448aa|up_7|NZ_CP010143.1_263443_264787_+	NA	NA|77aa|up_6|NZ_CP010143.1_264773_265004_+	NA	NA|335aa|up_5|NZ_CP010143.1_265104_266109_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP010143.1_266270_266687_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP010143.1_266732_267236_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP010143.1_267428_268625_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP010143.1_268680_271536_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP010143.1_271535_271979_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP010143.1_272332_273844_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP010143.1_274110_275211_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP010143.1_275210_276293_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP010143.1_276411_277914_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP010143.1_278043_279063_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|383aa|down_5|NZ_CP010143.1_280727_281875_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|327aa|down_6|NZ_CP010143.1_282669_283650_-	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase	NA|369aa|down_7|NZ_CP010143.1_283713_284820_-	PRK14131, PRK14131, N-acetylneuraminate epimerase	NA|239aa|down_8|NZ_CP010143.1_284839_285556_-	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM)	NA|201aa|down_9|NZ_CP010143.1_287009_287612_+	PRK09870, PRK09870, tyrosine recombinase; Provisional
GCF_001900655.1_ASM190065v1	NZ_CP010143	Escherichia coli strain D4 chromosome, complete genome	2	798163-798307	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA|28aa|up_2|NZ_CP010143.1_796033_796117_+,NA	NA|372aa|up_9|NZ_CP010143.1_790789_791905_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP010143.1_791921_792731_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP010143.1_792850_793309_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP010143.1_793491_794016_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP010143.1_794065_794257_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP010143.1_794514_795192_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP010143.1_795263_795548_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP010143.1_796033_796117_+	NA	NA|304aa|up_1|NZ_CP010143.1_796194_797106_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP010143.1_797230_798139_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP010143.1_798383_799568_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP010143.1_799693_802840_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP010143.1_802836_804039_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP010143.1_804228_804918_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP010143.1_804975_806271_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP010143.1_806677_807997_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP010143.1_808072_809446_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP010143.1_809601_811419_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP010143.1_811423_812005_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP010143.1_812097_813168_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_001900655.1_ASM190065v1	NZ_CP010143	Escherichia coli strain D4 chromosome, complete genome	3	938349-938445	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP010143.1_926129_927491_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP010143.1_927547_928849_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP010143.1_928870_930016_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP010143.1_930243_931029_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP010143.1_931039_932275_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP010143.1_932296_933346_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP010143.1_933662_935330_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP010143.1_935339_936599_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP010143.1_936609_937425_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP010143.1_937421_938315_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP010143.1_938509_939577_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP010143.1_939573_940083_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP010143.1_940200_940923_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP010143.1_940925_941420_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP010143.1_941593_942979_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP010143.1_943014_943536_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP010143.1_943643_943856_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP010143.1_943857_944724_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP010143.1_945194_945737_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP010143.1_945956_946649_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_001900655.1_ASM190065v1	NZ_CP010143	Escherichia coli strain D4 chromosome, complete genome	4	2794190-2794316	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA	NA|395aa|up_9|NZ_CP010143.1_2773097_2774282_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP010143.1_2774355_2775132_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP010143.1_2775136_2776786_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1505aa|up_6|NZ_CP010143.1_2776786_2781301_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP010143.1_2781324_2781948_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP010143.1_2781944_2783633_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP010143.1_2783781_2786409_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP010143.1_2786555_2787278_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP010143.1_2787405_2791158_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP010143.1_2791853_2794139_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP010143.1_2794372_2795503_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP010143.1_2795502_2795757_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|71aa|down_2|NZ_CP010143.1_2796536_2796749_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|116aa|down_3|NZ_CP010143.1_2796938_2797286_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|513aa|down_4|NZ_CP010143.1_2797334_2798873_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|359aa|down_5|NZ_CP010143.1_2799386_2800463_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_6|NZ_CP010143.1_2800467_2801826_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_7|NZ_CP010143.1_2802098_2803727_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_8|NZ_CP010143.1_2803716_2804976_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_9|NZ_CP010143.1_2804972_2806163_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
GCF_001900655.1_ASM190065v1	NZ_CP010143	Escherichia coli strain D4 chromosome, complete genome	5	3286596-3287112	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,5	8	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP010143.1_3278407_3279169_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010143.1_3279149_3280199_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010143.1_3280195_3280675_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010143.1_3280674_3281385_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010143.1_3281403_3281715_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010143.1_3281908_3282232_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010143.1_3282281_3282887_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010143.1_3282886_3284314_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010143.1_3284315_3285224_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010143.1_3285475_3286513_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP010143.1_3287217_3287502_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP010143.1_3287503_3288421_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP010143.1_3288436_3289036_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP010143.1_3289022_3289697_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	NA|383aa|down_4|NZ_CP010143.1_3290199_3291347_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|245aa|down_5|NZ_CP010143.1_3292836_3293571_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_6|NZ_CP010143.1_3293645_3295358_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_7|NZ_CP010143.1_3295357_3297157_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|down_8|NZ_CP010143.1_3297475_3297838_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|87aa|down_9|NZ_CP010143.1_3299176_3299437_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_001900655.1_ASM190065v1	NZ_CP010143	Escherichia coli strain D4 chromosome, complete genome	6	3309271-3309664	6,2,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	Orphan	GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,PD-DExK	NA,NA|47aa|down_1|NZ_CP010143.1_3310813_3310954_+	NA|600aa|up_9|NZ_CP010143.1_3295357_3297157_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_8|NZ_CP010143.1_3297475_3297838_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|87aa|up_7|NZ_CP010143.1_3299176_3299437_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_6|NZ_CP010143.1_3299453_3300029_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_5|NZ_CP010143.1_3300176_3301037_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP010143.1_3301789_3303199_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP010143.1_3303220_3304675_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP010143.1_3304744_3305530_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP010143.1_3305848_3307126_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010143.1_3307152_3308631_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010143.1_3310003_3310675_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP010143.1_3310813_3310954_+	NA	NA|291aa|down_2|NZ_CP010143.1_3310967_3311840_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP010143.1_3311899_3313198_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP010143.1_3313285_3314923_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP010143.1_3315150_3315942_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP010143.1_3316012_3316348_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP010143.1_3316347_3316596_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP010143.1_3316673_3318908_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP010143.1_3318955_3320257_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
