assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900575.1_ASM190057v1	NZ_CP010129	Escherichia coli strain C9 chromosome, complete genome	1	739355-739606	1	PILER-CR	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	TTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	NA,NA|180aa|down_1|NZ_CP010129.1_741113_741653_-	NA|260aa|up_9|NZ_CP010129.1_728138_728918_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|427aa|up_8|NZ_CP010129.1_729425_730706_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP010129.1_730954_731764_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP010129.1_731818_732283_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP010129.1_732282_732618_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP010129.1_732766_734338_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|NZ_CP010129.1_734712_736047_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP010129.1_736062_736833_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP010129.1_736862_737753_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP010129.1_737849_738995_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP010129.1_739904_741092_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP010129.1_741113_741653_-	NA	NA|115aa|down_2|NZ_CP010129.1_741908_742253_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP010129.1_742441_743380_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP010129.1_743478_744468_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP010129.1_744489_745821_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP010129.1_745846_747055_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP010129.1_747088_749383_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP010129.1_749396_749786_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP010129.1_749857_751222_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_001900575.1_ASM190057v1	NZ_CP010129	Escherichia coli strain C9 chromosome, complete genome	2	1120293-1120626	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	NA|47aa|up_1|NZ_CP010129.1_1119002_1119143_-,NA	NA|434aa|up_9|NZ_CP010129.1_1109699_1111001_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP010129.1_1111048_1113283_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP010129.1_1113360_1113609_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP010129.1_1113608_1113944_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP010129.1_1114014_1114806_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP010129.1_1115033_1116671_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP010129.1_1116758_1118057_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP010129.1_1118116_1118989_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP010129.1_1119002_1119143_-	NA	NA|224aa|up_0|NZ_CP010129.1_1119281_1119953_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP010129.1_1121264_1122743_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|480aa|down_1|NZ_CP010129.1_1124538_1125978_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_2|NZ_CP010129.1_1125999_1127409_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_3|NZ_CP010129.1_1127386_1128166_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_4|NZ_CP010129.1_1128162_1129023_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_5|NZ_CP010129.1_1129170_1129746_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_6|NZ_CP010129.1_1129762_1130023_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|121aa|down_7|NZ_CP010129.1_1131362_1131725_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_8|NZ_CP010129.1_1132043_1133843_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_9|NZ_CP010129.1_1133842_1135555_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_001900575.1_ASM190057v1	NZ_CP010129	Escherichia coli strain C9 chromosome, complete genome	3	1138162-1138495	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	NA,NA	NA|470aa|up_9|NZ_CP010129.1_1125999_1127409_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|up_8|NZ_CP010129.1_1127386_1128166_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|up_7|NZ_CP010129.1_1128162_1129023_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_6|NZ_CP010129.1_1129170_1129746_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_5|NZ_CP010129.1_1129762_1130023_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|121aa|up_4|NZ_CP010129.1_1131362_1131725_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_3|NZ_CP010129.1_1132043_1133843_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_2|NZ_CP010129.1_1133842_1135555_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_1|NZ_CP010129.1_1135628_1136363_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_0|NZ_CP010129.1_1136627_1136780_+	pfam01848, HOK_GEF, Hok/gef family	NA|346aa|down_0|NZ_CP010129.1_1138577_1139615_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP010129.1_1139866_1140775_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP010129.1_1140776_1142204_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP010129.1_1142203_1142809_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP010129.1_1142858_1143182_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP010129.1_1143375_1143687_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP010129.1_1143705_1144416_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP010129.1_1144415_1144895_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP010129.1_1144891_1145941_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP010129.1_1145921_1146683_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001900575.1_ASM190057v1	NZ_CP010129	Escherichia coli strain C9 chromosome, complete genome	4	1632520-1632637	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	NA,NA	NA|62aa|up_9|NZ_CP010129.1_1621805_1621991_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP010129.1_1622003_1622903_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP010129.1_1623095_1624286_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP010129.1_1624282_1625542_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP010129.1_1625531_1627160_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP010129.1_1627432_1628791_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP010129.1_1628795_1629872_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP010129.1_1630334_1630985_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP010129.1_1631038_1631293_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP010129.1_1631292_1632423_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP010129.1_1632656_1634942_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP010129.1_1635637_1639390_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP010129.1_1639517_1640240_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP010129.1_1640386_1643014_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP010129.1_1643162_1644851_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP010129.1_1644847_1645471_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP010129.1_1651076_1652726_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP010129.1_1652730_1653507_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP010129.1_1653580_1654765_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP010129.1_1654795_1656118_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_001900575.1_ASM190057v1	NZ_CP010129	Escherichia coli strain C9 chromosome, complete genome	5	2221406-2221529	4	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	NA,NA|30aa|down_7|NZ_CP010129.1_2230424_2230514_+	NA|471aa|up_9|NZ_CP010129.1_2210084_2211497_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP010129.1_2212053_2212263_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP010129.1_2213493_2214120_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP010129.1_2214140_2216243_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP010129.1_2216255_2216894_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP010129.1_2216957_2217626_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP010129.1_2217622_2218408_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP010129.1_2218411_2219224_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP010129.1_2219235_2220840_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP010129.1_2220965_2221271_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP010129.1_2221843_2223100_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP010129.1_2223139_2224513_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP010129.1_2224727_2225369_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP010129.1_2225408_2226557_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP010129.1_2226847_2228059_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP010129.1_2228171_2229104_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP010129.1_2229100_2230126_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP010129.1_2230424_2230514_+	NA	NA|390aa|down_8|NZ_CP010129.1_2230679_2231849_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP010129.1_2232083_2232665_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001900575.1_ASM190057v1	NZ_CP010129	Escherichia coli strain C9 chromosome, complete genome	6	2956693-2956784	5	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	NA|70aa|up_9|NZ_CP010129.1_2945769_2945979_-,NA	NA|70aa|up_9|NZ_CP010129.1_2945769_2945979_-	NA	NA|1321aa|up_8|NZ_CP010129.1_2946033_2949996_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP010129.1_2950035_2950674_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP010129.1_2950961_2952053_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP010129.1_2952052_2952745_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP010129.1_2952756_2953143_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP010129.1_2953150_2953951_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP010129.1_2953960_2954551_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP010129.1_2954561_2955056_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP010129.1_2955076_2956405_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP010129.1_2957207_2957804_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP010129.1_2957824_2958052_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP010129.1_2958089_2959331_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP010129.1_2959623_2960880_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP010129.1_2961140_2962061_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP010129.1_2962060_2962366_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP010129.1_2962517_2963117_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP010129.1_2963113_2965660_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP010129.1_2965659_2966832_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP010129.1_2966961_2967654_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001900575.1_ASM190057v1	NZ_CP010129	Escherichia coli strain C9 chromosome, complete genome	7	3220317-3220461	6	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	NA,NA	NA|330aa|up_9|NZ_CP010129.1_3208215_3209205_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP010129.1_3209601_3210510_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP010129.1_3210701_3212723_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP010129.1_3213301_3213979_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP010129.1_3213971_3214727_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP010129.1_3214713_3215868_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP010129.1_3215864_3216905_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP010129.1_3216991_3218281_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP010129.1_3218339_3218816_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP010129.1_3218967_3220251_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP010129.1_3220484_3222746_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP010129.1_3222928_3224362_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP010129.1_3224437_3225490_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|124aa|down_3|NZ_CP010129.1_3225673_3226045_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|222aa|down_4|NZ_CP010129.1_3227028_3227694_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_5|NZ_CP010129.1_3227734_3228730_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_6|NZ_CP010129.1_3228884_3229703_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_7|NZ_CP010129.1_3229703_3230762_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_8|NZ_CP010129.1_3230764_3231454_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_9|NZ_CP010129.1_3231453_3232227_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional
GCF_001900575.1_ASM190057v1	NZ_CP010129	Escherichia coli strain C9 chromosome, complete genome	8	3467439-3467535	7	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	NA,NA	NA|403aa|up_9|NZ_CP010129.1_3457823_3459032_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|181aa|up_8|NZ_CP010129.1_3460146_3460689_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP010129.1_3461159_3462026_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP010129.1_3462027_3462240_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP010129.1_3462347_3462869_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP010129.1_3462904_3464290_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP010129.1_3464463_3464958_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP010129.1_3464960_3465683_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP010129.1_3465800_3466310_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP010129.1_3466306_3467374_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP010129.1_3467568_3468462_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP010129.1_3468458_3469274_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP010129.1_3469284_3470544_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP010129.1_3470553_3472221_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP010129.1_3472537_3473587_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP010129.1_3473608_3474844_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP010129.1_3474854_3475640_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP010129.1_3475867_3477013_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP010129.1_3477034_3478336_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP010129.1_3478392_3479754_-	PRK08044, PRK08044, allantoinase AllB
GCF_001900575.1_ASM190057v1	NZ_CP010129	Escherichia coli strain C9 chromosome, complete genome	9	3732414-3732510	8	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	NA,NA	NA|352aa|up_9|NZ_CP010129.1_3721403_3722459_+	PRK10159, PRK10159, phosphoporin PhoE	NA|134aa|up_8|NZ_CP010129.1_3722497_3722899_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_7|NZ_CP010129.1_3722956_3724201_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_6|NZ_CP010129.1_3724292_3724751_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_5|NZ_CP010129.1_3725011_3726469_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_4|NZ_CP010129.1_3727494_3727947_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_3|NZ_CP010129.1_3727956_3728355_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_2|NZ_CP010129.1_3728357_3728651_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_1|NZ_CP010129.1_3728702_3729758_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_0|NZ_CP010129.1_3729828_3730614_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|166aa|down_0|NZ_CP010129.1_3732513_3733011_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_CP010129.1_3733186_3733960_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP010129.1_3734145_3734406_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_CP010129.1_3734408_3734687_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_CP010129.1_3734842_3735583_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_CP010129.1_3735553_3736321_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_CP010129.1_3736526_3737105_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_CP010129.1_3737344_3739789_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_CP010129.1_3739831_3740305_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_CP010129.1_3740458_3741229_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_001900575.1_ASM190057v1	NZ_CP010129	Escherichia coli strain C9 chromosome, complete genome	10	3948661-3948797	9	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCC	47	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,PD-DExK,DEDDh,DinG	NA,NA	NA|444aa|up_9|NZ_CP010129.1_3936262_3937594_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_8|NZ_CP010129.1_3937651_3937939_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_7|NZ_CP010129.1_3937935_3939222_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_6|NZ_CP010129.1_3939272_3940214_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_5|NZ_CP010129.1_3940228_3940999_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_4|NZ_CP010129.1_3941472_3942987_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_3|NZ_CP010129.1_3943017_3944160_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|518aa|up_2|NZ_CP010129.1_3945579_3947133_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP010129.1_3947241_3948027_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP010129.1_3948032_3948623_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|403aa|down_0|NZ_CP010129.1_3948958_3950167_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|140aa|down_1|NZ_CP010129.1_3950145_3950565_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_2|NZ_CP010129.1_3950825_3954047_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_3|NZ_CP010129.1_3954064_3955213_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_4|NZ_CP010129.1_3955668_3956490_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_5|NZ_CP010129.1_3956656_3957571_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_6|NZ_CP010129.1_3957636_3958587_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_7|NZ_CP010129.1_3958588_3959038_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_8|NZ_CP010129.1_3959162_3959657_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_9|NZ_CP010129.1_3959656_3962473_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed
