assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900535.1_ASM190053v1	NZ_CP010122	Escherichia coli strain C5 chromosome, complete genome	1	136757-136901	1	CRISPRCasFinder	no		DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	NA,NA	NA|330aa|up_9|NZ_CP010122.1_124655_125645_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP010122.1_126041_126950_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP010122.1_127141_129163_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP010122.1_129741_130419_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP010122.1_130411_131167_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP010122.1_131153_132308_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP010122.1_132304_133345_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP010122.1_133431_134721_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP010122.1_134779_135256_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP010122.1_135407_136691_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP010122.1_136924_139186_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP010122.1_139368_140802_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP010122.1_140877_141930_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP010122.1_142113_143067_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP010122.1_143107_144103_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP010122.1_144257_145076_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP010122.1_145076_146135_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP010122.1_146137_146827_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP010122.1_146826_147600_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP010122.1_147766_147916_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001900535.1_ASM190053v1	NZ_CP010122	Escherichia coli strain C5 chromosome, complete genome	2	407626-407739	1	PILER-CR	no		DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	NA|34aa|up_7|NZ_CP010122.1_401940_402042_-,NA|50aa|up_3|NZ_CP010122.1_405565_405715_-,NA|101aa|up_1|NZ_CP010122.1_406162_406465_-,NA|72aa|down_9|NZ_CP010122.1_412870_413086_+	NA|57aa|up_9|NZ_CP010122.1_401318_401489_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_8|NZ_CP010122.1_401488_401944_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_7|NZ_CP010122.1_401940_402042_-	NA	NA|266aa|up_6|NZ_CP010122.1_402158_402956_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|184aa|up_5|NZ_CP010122.1_402965_403517_-	PRK09818, PRK09818, kinase inhibitor	NA|509aa|up_4|NZ_CP010122.1_403981_405508_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|50aa|up_3|NZ_CP010122.1_405565_405715_-	NA	NA|111aa|up_2|NZ_CP010122.1_405762_406095_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|101aa|up_1|NZ_CP010122.1_406162_406465_-	NA	NA|234aa|up_0|NZ_CP010122.1_406461_407163_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP010122.1_408175_408715_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP010122.1_408784_409015_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP010122.1_409119_409809_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_3|NZ_CP010122.1_410404_410611_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP010122.1_410686_410983_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP010122.1_410988_411774_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NZ_CP010122.1_411770_412451_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NZ_CP010122.1_412447_412630_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NZ_CP010122.1_412602_412794_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|72aa|down_9|NZ_CP010122.1_412870_413086_+	NA
GCF_001900535.1_ASM190053v1	NZ_CP010122	Escherichia coli strain C5 chromosome, complete genome	3	429774-429870	2	CRISPRCasFinder	no		DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	NA,NA	NA|231aa|up_9|NZ_CP010122.1_421559_422252_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP010122.1_422471_423014_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP010122.1_423494_424361_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP010122.1_424362_424575_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP010122.1_424682_425204_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP010122.1_425239_426625_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP010122.1_426798_427293_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP010122.1_427295_428018_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP010122.1_428135_428645_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP010122.1_428641_429709_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP010122.1_429903_430797_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP010122.1_430793_431609_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP010122.1_431619_432879_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP010122.1_432888_434556_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP010122.1_434872_435922_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP010122.1_435943_437179_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP010122.1_437189_437975_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP010122.1_438202_439348_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP010122.1_439369_440671_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP010122.1_440727_442089_-	PRK08044, PRK08044, allantoinase AllB
GCF_001900535.1_ASM190053v1	NZ_CP010122	Escherichia coli strain C5 chromosome, complete genome	4	1549341-1550711	2,3,1,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3	DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACC	29,29,29,26	0	0	NA	NA	I-E:I-E:I-E:I-E	20,22,22,20	22	Unclear	DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	NA|47aa|up_1|NZ_CP010122.1_1548050_1548191_-,NA	NA|434aa|up_9|NZ_CP010122.1_1538747_1540049_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP010122.1_1540096_1542331_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP010122.1_1542408_1542657_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP010122.1_1542656_1542992_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP010122.1_1543062_1543854_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP010122.1_1544081_1545719_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP010122.1_1545806_1547105_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP010122.1_1547164_1548037_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP010122.1_1548050_1548191_-	NA	NA|224aa|up_0|NZ_CP010122.1_1548329_1549001_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP010122.1_1551349_1552828_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP010122.1_1552854_1554132_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP010122.1_1554450_1555236_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP010122.1_1555305_1556760_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP010122.1_1556781_1558191_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP010122.1_1558168_1558948_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP010122.1_1558944_1559805_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP010122.1_1559952_1560528_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP010122.1_1560544_1560805_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP010122.1_1560795_1562067_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_001900535.1_ASM190053v1	NZ_CP010122	Escherichia coli strain C5 chromosome, complete genome	5	1576411-1577232	4,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1	DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	TypeI-E	DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	NA,NA	NA|571aa|up_9|NZ_CP010122.1_1564624_1566337_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP010122.1_1566410_1567145_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_7|NZ_CP010122.1_1567409_1567562_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_6|NZ_CP010122.1_1567755_1570455_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_5|NZ_CP010122.1_1570552_1572115_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_4|NZ_CP010122.1_1572111_1572648_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_3|NZ_CP010122.1_1572659_1573715_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_2|NZ_CP010122.1_1573725_1574472_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_1|NZ_CP010122.1_1574453_1575104_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_0|NZ_CP010122.1_1575100_1576021_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|346aa|down_0|NZ_CP010122.1_1577313_1578351_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP010122.1_1578602_1579511_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP010122.1_1579512_1580940_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP010122.1_1580939_1581545_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP010122.1_1581594_1581918_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP010122.1_1582111_1582423_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP010122.1_1582441_1583152_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP010122.1_1583151_1583631_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP010122.1_1583627_1584677_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP010122.1_1584657_1585419_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001900535.1_ASM190053v1	NZ_CP010122	Escherichia coli strain C5 chromosome, complete genome	6	2762062-2762185	5	CRISPRCasFinder	no	DEDDh	DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,c2c9_V-U4,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,RT,WYL	NA,NA|30aa|down_7|NZ_CP010122.1_2771081_2771171_+	NA|471aa|up_9|NZ_CP010122.1_2751515_2752928_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP010122.1_2753484_2753694_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP010122.1_2754149_2754776_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP010122.1_2754796_2756899_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP010122.1_2756911_2757550_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP010122.1_2757613_2758282_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP010122.1_2758278_2759064_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP010122.1_2759067_2759880_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP010122.1_2759891_2761496_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP010122.1_2761621_2761927_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP010122.1_2762499_2763756_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP010122.1_2763796_2765170_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP010122.1_2765384_2766026_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP010122.1_2766065_2767214_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP010122.1_2767504_2768716_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP010122.1_2768828_2769761_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP010122.1_2769757_2770783_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP010122.1_2771081_2771171_+	NA	NA|390aa|down_8|NZ_CP010122.1_2771336_2772506_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP010122.1_2772651_2773233_-	PRK10543, PRK10543, superoxide dismutase [Fe]
