assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900415.1_ASM190041v1	NZ_CP010169	Escherichia coli strain H5 chromosome, complete genome	1	147283-148165	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DEDDh,c2c9_V-U4,DinG,RT	Type I-E	CGGTTTATCCCCGCTGACGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGACGCGGGGAACNC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	TypeI-E	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|254aa|up_9|NZ_CP010169.1_139095_139857_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010169.1_139837_140887_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010169.1_140883_141363_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010169.1_141362_142073_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010169.1_142091_142403_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010169.1_142596_142920_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010169.1_142969_143575_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010169.1_143574_145002_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010169.1_145003_145912_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010169.1_146163_147201_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP010169.1_148270_148555_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP010169.1_148556_149474_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP010169.1_149489_150089_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP010169.1_150075_150750_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP010169.1_150752_151844_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP010169.1_151856_152339_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP010169.1_152331_153840_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP010169.1_154254_156921_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP010169.1_157279_158014_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP010169.1_158087_159800_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_001900415.1_ASM190041v1	NZ_CP010169	Escherichia coli strain H5 chromosome, complete genome	2	173714-174718	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DEDDh,c2c9_V-U4,DinG,RT	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,16,15	16	Unclear	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA|47aa|down_1|NZ_CP010169.1_175867_176008_+	NA|424aa|up_9|NZ_CP010169.1_162357_163629_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP010169.1_163619_163880_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP010169.1_163896_164472_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP010169.1_164619_165480_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP010169.1_165476_166256_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP010169.1_166233_167643_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP010169.1_167664_169119_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP010169.1_169188_169974_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP010169.1_170292_171570_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010169.1_171596_173075_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010169.1_175057_175729_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP010169.1_175867_176008_+	NA	NA|291aa|down_2|NZ_CP010169.1_176021_176894_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP010169.1_176953_178252_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP010169.1_178339_179977_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP010169.1_180204_180996_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP010169.1_181066_181402_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP010169.1_181401_181650_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP010169.1_181727_183962_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP010169.1_184009_185311_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_001900415.1_ASM190041v1	NZ_CP010169	Escherichia coli strain H5 chromosome, complete genome	3	2525768-2525864	3	CRISPRCasFinder	no		csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DEDDh,c2c9_V-U4,DinG,RT	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|454aa|up_9|NZ_CP010169.1_2513548_2514910_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP010169.1_2514966_2516268_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP010169.1_2516289_2517435_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP010169.1_2517662_2518448_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP010169.1_2518458_2519694_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP010169.1_2519715_2520765_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP010169.1_2521081_2522749_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP010169.1_2522758_2524018_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP010169.1_2524028_2524844_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP010169.1_2524840_2525734_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP010169.1_2525928_2526996_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP010169.1_2526992_2527502_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP010169.1_2527619_2528342_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP010169.1_2528344_2528839_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP010169.1_2529012_2530398_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP010169.1_2530433_2530955_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP010169.1_2531062_2531275_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP010169.1_2531276_2532143_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP010169.1_2532623_2533166_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP010169.1_2533385_2534078_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_001900415.1_ASM190041v1	NZ_CP010169	Escherichia coli strain H5 chromosome, complete genome	4	2932339-2932605	4,3	CRISPRCasFinder,CRT	no		csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DEDDh,c2c9_V-U4,DinG,RT	Orphan	CGTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	29,28	0	0	NA	NA	I-F:I-F	4,4	4	Orphan	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|551aa|up_9|NZ_CP010169.1_2918750_2920403_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP010169.1_2920546_2921446_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP010169.1_2921940_2922636_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP010169.1_2923060_2924719_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP010169.1_2924715_2925672_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP010169.1_2925822_2926938_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP010169.1_2926934_2928881_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP010169.1_2928953_2929178_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP010169.1_2929500_2929821_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP010169.1_2929851_2932128_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP010169.1_2932989_2933208_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP010169.1_2933492_2934197_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP010169.1_2934238_2935960_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP010169.1_2935960_2937727_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP010169.1_2937849_2938815_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP010169.1_2939359_2939854_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1330aa|down_6|NZ_CP010169.1_2939988_2943978_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP010169.1_2944132_2944744_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP010169.1_2944754_2946098_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP010169.1_2946188_2947481_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_001900415.1_ASM190041v1	NZ_CP010169	Escherichia coli strain H5 chromosome, complete genome	5	4431444-4431570	5	CRISPRCasFinder	no		csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DEDDh,c2c9_V-U4,DinG,RT	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,DEDDh,c2c9_V-U4,DinG,RT	NA,NA	NA|395aa|up_9|NZ_CP010169.1_4410351_4411536_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP010169.1_4411609_4412386_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP010169.1_4412390_4414040_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1505aa|up_6|NZ_CP010169.1_4414040_4418555_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP010169.1_4418578_4419202_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP010169.1_4419198_4420887_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP010169.1_4421035_4423663_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP010169.1_4423809_4424532_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP010169.1_4424659_4428412_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP010169.1_4429107_4431393_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP010169.1_4431626_4432757_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP010169.1_4432756_4433011_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP010169.1_4433064_4433715_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP010169.1_4434177_4435254_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP010169.1_4435258_4436617_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP010169.1_4436889_4438518_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP010169.1_4438507_4439767_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP010169.1_4439763_4440954_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|301aa|down_8|NZ_CP010169.1_4441146_4442049_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_9|NZ_CP010169.1_4442089_4442893_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
