assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900395.1_ASM190039v1	NZ_CP010151	Escherichia coli strain D8 chromosome, complete genome	1	737121-737234	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK	NA,NA	NA|74aa|up_9|NZ_CP010151.1_726690_726912_-	PRK09956, PRK09956, ISNCY family transposase	NA|304aa|up_8|NZ_CP010151.1_726924_727836_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP010151.1_728028_729219_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP010151.1_729215_730475_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP010151.1_730464_732093_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP010151.1_732365_733724_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP010151.1_733728_734805_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP010151.1_735007_735658_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP010151.1_735711_735966_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP010151.1_735965_737096_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP010151.1_737285_739571_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP010151.1_740253_744012_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP010151.1_744151_744874_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP010151.1_745020_747648_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP010151.1_747796_749485_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP010151.1_749481_750105_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1505aa|down_6|NZ_CP010151.1_750128_754643_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP010151.1_754643_756293_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP010151.1_756297_757074_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP010151.1_757147_758332_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_001900395.1_ASM190039v1	NZ_CP010151	Escherichia coli strain D8 chromosome, complete genome	2	1462690-1462813	2	CRISPRCasFinder	no	DEDDh	csa3,cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK	NA,NA|30aa|down_7|NZ_CP010151.1_1471709_1471799_+	NA|471aa|up_9|NZ_CP010151.1_1452142_1453555_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP010151.1_1454111_1454321_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP010151.1_1454776_1455403_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP010151.1_1455423_1457526_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP010151.1_1457538_1458177_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP010151.1_1458240_1458909_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP010151.1_1458905_1459691_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP010151.1_1459694_1460507_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP010151.1_1460512_1462123_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP010151.1_1462248_1462554_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP010151.1_1463127_1464384_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP010151.1_1464424_1465798_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP010151.1_1466012_1466654_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP010151.1_1466693_1467842_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP010151.1_1468132_1469344_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP010151.1_1469456_1470389_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP010151.1_1470385_1471411_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP010151.1_1471709_1471799_+	NA	NA|390aa|down_8|NZ_CP010151.1_1471963_1473133_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP010151.1_1473278_1473860_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001900395.1_ASM190039v1	NZ_CP010151	Escherichia coli strain D8 chromosome, complete genome	3	2187677-2187768	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK	NA|70aa|up_9|NZ_CP010151.1_2176927_2177137_-,NA	NA|70aa|up_9|NZ_CP010151.1_2176927_2177137_-	NA	NA|1321aa|up_8|NZ_CP010151.1_2177191_2181154_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP010151.1_2181193_2181832_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP010151.1_2182119_2183211_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP010151.1_2183210_2183903_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP010151.1_2183914_2184301_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP010151.1_2184308_2185109_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP010151.1_2185118_2185709_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP010151.1_2185719_2186214_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP010151.1_2186234_2187563_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP010151.1_2188191_2188788_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP010151.1_2188808_2189036_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP010151.1_2189073_2190315_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP010151.1_2190849_2191770_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP010151.1_2191769_2192075_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP010151.1_2192430_2193030_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP010151.1_2193026_2195573_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP010151.1_2195572_2196745_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP010151.1_2196874_2197567_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP010151.1_2197539_2198568_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_001900395.1_ASM190039v1	NZ_CP010151	Escherichia coli strain D8 chromosome, complete genome	4	2825523-2825658	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK	Orphan	GCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK	NA|82aa|up_3|NZ_CP010151.1_2820799_2821045_-,NA	NA|484aa|up_9|NZ_CP010151.1_2814056_2815508_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|390aa|up_8|NZ_CP010151.1_2815541_2816711_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|297aa|up_7|NZ_CP010151.1_2816870_2817761_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|529aa|up_6|NZ_CP010151.1_2817999_2819586_+	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|92aa|up_5|NZ_CP010151.1_2819686_2819962_-	PRK09929, PRK09929, hypothetical protein; Provisional	NA|225aa|up_4|NZ_CP010151.1_2820108_2820783_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|82aa|up_3|NZ_CP010151.1_2820799_2821045_-	NA	NA|350aa|up_2|NZ_CP010151.1_2821666_2822716_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|461aa|up_1|NZ_CP010151.1_2823092_2824475_-	PRK06846, PRK06846, putative deaminase; Validated	NA|317aa|up_0|NZ_CP010151.1_2824484_2825435_-	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|473aa|down_0|NZ_CP010151.1_2825681_2827100_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|516aa|down_1|NZ_CP010151.1_2827099_2828647_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|288aa|down_2|NZ_CP010151.1_2828636_2829500_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|202aa|down_3|NZ_CP010151.1_2829539_2830145_-	sd00045, ANK, ankyrin repeats	NA|166aa|down_4|NZ_CP010151.1_2830402_2830900_+	pfam06496, DUF1097, Protein of unknown function (DUF1097)	NA|311aa|down_5|NZ_CP010151.1_2830991_2831924_+	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|363aa|down_6|NZ_CP010151.1_2831965_2833054_-	smart00052, EAL, Putative diguanylate phosphodiesterase	NA|678aa|down_7|NZ_CP010151.1_2833931_2835965_-	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|196aa|down_8|NZ_CP010151.1_2836093_2836681_+	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|491aa|down_9|NZ_CP010151.1_2836694_2838167_+	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional
GCF_001900395.1_ASM190039v1	NZ_CP010151	Escherichia coli strain D8 chromosome, complete genome	5	3445223-3445362	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK	NA,NA	NA|340aa|up_9|NZ_CP010151.1_3433433_3434453_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP010151.1_3434456_3435020_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP010151.1_3435236_3436268_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP010151.1_3436291_3437056_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP010151.1_3437120_3438440_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP010151.1_3438506_3439505_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP010151.1_3439582_3441085_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP010151.1_3441245_3442328_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP010151.1_3442327_3443428_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP010151.1_3443694_3445206_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP010151.1_3445463_3445907_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP010151.1_3445906_3448762_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP010151.1_3448808_3449996_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP010151.1_3450188_3450692_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP010151.1_3450869_3451286_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP010151.1_3451447_3452452_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP010151.1_3452496_3452949_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP010151.1_3453626_3454847_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|335aa|down_8|NZ_CP010151.1_3455813_3456818_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|468aa|down_9|NZ_CP010151.1_3456874_3458278_+	COG1288, COG1288, Predicted membrane protein [Function unknown]
