assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	1	108388-108479	1	CRISPRCasFinder	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA	NA|503aa|up_9|NZ_CP010133.1_95972_97481_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP010133.1_97902_101865_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP010133.1_101904_102543_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP010133.1_102830_103922_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP010133.1_103921_104614_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP010133.1_104625_105012_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP010133.1_105019_105820_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP010133.1_105829_106420_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP010133.1_106430_106925_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP010133.1_106945_108274_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP010133.1_108902_109499_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP010133.1_109519_109747_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP010133.1_109784_111026_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP010133.1_111314_112574_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP010133.1_112833_113754_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP010133.1_113753_114059_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP010133.1_114151_114751_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP010133.1_114747_117294_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP010133.1_117293_118466_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP010133.1_118595_119288_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	2	250186-250334	2,1	CRISPRCasFinder,PILER-CR	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	ATTTCTAAGCTGCCTGTACGGCAGTGAAC,ATTTCTAAGCTGCCTGTACGGCAGTGAAC	29,29	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA	NA|431aa|up_9|NZ_CP010133.1_235233_236526_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP010133.1_236616_237960_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP010133.1_237970_238582_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP010133.1_238736_242804_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP010133.1_242938_243433_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP010133.1_243976_244942_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP010133.1_245064_246831_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP010133.1_246831_248553_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP010133.1_248594_249299_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP010133.1_249583_249802_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP010133.1_250545_252822_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP010133.1_252852_253173_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP010133.1_253495_253720_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP010133.1_253792_255739_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP010133.1_255735_256851_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP010133.1_257001_257958_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP010133.1_257954_259613_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP010133.1_260038_260734_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP010133.1_261228_262128_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP010133.1_262271_263924_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	3	369996-370140	3	CRISPRCasFinder	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA	NA|171aa|up_9|NZ_CP010133.1_357360_357873_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|330aa|up_8|NZ_CP010133.1_357894_358884_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|674aa|up_7|NZ_CP010133.1_360380_362402_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP010133.1_362980_363658_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP010133.1_363650_364406_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP010133.1_364392_365547_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP010133.1_365543_366584_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP010133.1_366670_367960_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP010133.1_368018_368495_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP010133.1_368646_369930_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP010133.1_370163_372425_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP010133.1_372607_374041_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP010133.1_374116_375169_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP010133.1_375352_376306_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP010133.1_376346_377342_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP010133.1_377496_378315_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP010133.1_378315_379374_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP010133.1_379376_380066_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP010133.1_380065_380839_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP010133.1_381004_381154_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	4	500368-500459	4	CRISPRCasFinder	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA	NA|503aa|up_9|NZ_CP010133.1_487952_489461_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP010133.1_489882_493845_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP010133.1_493884_494523_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP010133.1_494810_495902_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP010133.1_495901_496594_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP010133.1_496605_496992_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP010133.1_496999_497800_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP010133.1_497809_498400_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP010133.1_498410_498905_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP010133.1_498925_500254_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP010133.1_500882_501479_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP010133.1_501499_501727_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP010133.1_501764_503006_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP010133.1_503294_504554_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP010133.1_504813_505734_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP010133.1_505733_506039_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP010133.1_506131_506731_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP010133.1_506727_509274_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP010133.1_509273_510446_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP010133.1_510575_511268_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	5	642166-642314	5,2	CRISPRCasFinder,PILER-CR	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	ATTTCTAAGCTGCCTGTACGGCAGTGAAC,ATTTCTAAGCTGCCTGTACGGCAGTGAAC	29,29	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA	NA|431aa|up_9|NZ_CP010133.1_627213_628506_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP010133.1_628596_629940_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP010133.1_629950_630562_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP010133.1_630716_634784_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP010133.1_634918_635413_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP010133.1_635956_636922_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP010133.1_637044_638811_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP010133.1_638811_640533_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP010133.1_640574_641279_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP010133.1_641563_641782_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP010133.1_642525_644802_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP010133.1_644832_645153_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP010133.1_645475_645700_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP010133.1_645772_647719_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP010133.1_647715_648831_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP010133.1_648981_649938_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP010133.1_649934_651593_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP010133.1_652018_652714_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP010133.1_653208_654108_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP010133.1_654251_655904_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	6	761976-762120	6	CRISPRCasFinder	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA	NA|171aa|up_9|NZ_CP010133.1_749340_749853_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|330aa|up_8|NZ_CP010133.1_749874_750864_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|674aa|up_7|NZ_CP010133.1_752360_754382_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP010133.1_754960_755638_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP010133.1_755630_756386_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP010133.1_756372_757527_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP010133.1_757523_758564_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP010133.1_758650_759940_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP010133.1_759998_760475_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP010133.1_760626_761910_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP010133.1_762143_764405_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP010133.1_764587_766021_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP010133.1_766096_767149_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP010133.1_767332_768286_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP010133.1_768326_769322_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP010133.1_769476_770295_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP010133.1_770295_771354_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP010133.1_771356_772046_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP010133.1_772045_772819_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP010133.1_772984_773134_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	7	1176377-1176524	7	CRISPRCasFinder	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	CGCGAGCGCCTTATCCGACCTACGGTTCAGACCTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA|82aa|down_7|NZ_CP010133.1_1185439_1185685_-,NA|272aa|down_8|NZ_CP010133.1_1186097_1186913_-	NA|361aa|up_9|NZ_CP010133.1_1163574_1164657_+	PRK09526, lacI, lac repressor; Reviewed	NA|1025aa|up_8|NZ_CP010133.1_1164779_1167854_+	PRK09525, lacZ, beta-galactosidase	NA|418aa|up_7|NZ_CP010133.1_1167905_1169159_+	PRK09528, lacY, galactoside permease; Reviewed	NA|204aa|up_6|NZ_CP010133.1_1169224_1169836_+	PRK09527, lacA, galactoside O-acetyltransferase; Reviewed	NA|394aa|up_5|NZ_CP010133.1_1169938_1171120_-	PRK09705, cynX, putative cyanate transporter; Provisional	NA|157aa|up_4|NZ_CP010133.1_1171125_1171596_-	COG1513, CynS, Cyanate lyase [Inorganic ion transport and metabolism]	NA|220aa|up_3|NZ_CP010133.1_1171626_1172286_-	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|300aa|up_2|NZ_CP010133.1_1172395_1173295_+	PRK11242, PRK11242, DNA-binding transcriptional regulator CynR; Provisional	NA|428aa|up_1|NZ_CP010133.1_1173631_1174915_-	PRK09230, PRK09230, cytosine deaminase; Provisional	NA|420aa|up_0|NZ_CP010133.1_1174904_1176164_-	PRK11017, codB, cytosine permease; Provisional	NA|629aa|down_0|NZ_CP010133.1_1176589_1178476_-	PRK10524, prpE, propionyl-CoA synthetase; Provisional	NA|484aa|down_1|NZ_CP010133.1_1178515_1179967_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|389aa|down_2|NZ_CP010133.1_1180003_1181170_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|297aa|down_3|NZ_CP010133.1_1181516_1182407_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|529aa|down_4|NZ_CP010133.1_1182645_1184232_+	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|92aa|down_5|NZ_CP010133.1_1184329_1184605_-	PRK09929, PRK09929, hypothetical protein; Provisional	NA|224aa|down_6|NZ_CP010133.1_1184751_1185423_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|82aa|down_7|NZ_CP010133.1_1185439_1185685_-	NA	NA|272aa|down_8|NZ_CP010133.1_1186097_1186913_-	NA	NA|350aa|down_9|NZ_CP010133.1_1187155_1188205_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	8	1530984-1531099	8	CRISPRCasFinder	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA	NA|393aa|up_9|NZ_CP010133.1_1519012_1520191_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP010133.1_1520292_1520424_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP010133.1_1520512_1522168_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP010133.1_1522331_1523315_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP010133.1_1523290_1524901_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP010133.1_1524884_1525583_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP010133.1_1525684_1526449_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP010133.1_1526534_1527413_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP010133.1_1527750_1529451_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP010133.1_1529461_1530964_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP010133.1_1531163_1531859_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP010133.1_1531933_1534285_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP010133.1_1534449_1537356_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP010133.1_1537367_1538027_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP010133.1_1538143_1538959_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP010133.1_1539213_1541568_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP010133.1_1541620_1542907_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP010133.1_1542906_1543896_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP010133.1_1543892_1544714_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP010133.1_1544716_1545094_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	9	3036466-3036605	9	CRISPRCasFinder	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA	NA|336aa|up_9|NZ_CP010133.1_3029056_3030064_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|NZ_CP010133.1_3030144_3031023_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|NZ_CP010133.1_3031031_3032027_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|NZ_CP010133.1_3032235_3032760_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|NZ_CP010133.1_3032753_3033257_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|NZ_CP010133.1_3033243_3033546_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|NZ_CP010133.1_3033596_3034040_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|NZ_CP010133.1_3034019_3034538_-	TIGR01382, Uncharacterized_protein_MJ0967, intracellular protease, PfpI family	NA|212aa|up_1|NZ_CP010133.1_3034665_3035301_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|NZ_CP010133.1_3035373_3036414_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|NZ_CP010133.1_3036618_3037194_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|NZ_CP010133.1_3037203_3037794_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|NZ_CP010133.1_3037813_3038209_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|NZ_CP010133.1_3038166_3040203_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|NZ_CP010133.1_3040267_3041128_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|NZ_CP010133.1_3041170_3042262_-	pfam00419, Fimbrial, Fimbrial protein	NA|839aa|down_6|NZ_CP010133.1_3042272_3044789_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|232aa|down_7|NZ_CP010133.1_3044818_3045514_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|195aa|down_8|NZ_CP010133.1_3045593_3046178_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|252aa|down_9|NZ_CP010133.1_3046577_3047333_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	10	3080568-3080685	10	CRISPRCasFinder	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA|55aa|down_0|NZ_CP010133.1_3080758_3080923_-	NA|115aa|up_9|NZ_CP010133.1_3068289_3068634_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP010133.1_3068822_3069761_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP010133.1_3069859_3070849_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP010133.1_3070870_3072202_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP010133.1_3072227_3073436_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP010133.1_3073469_3075764_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP010133.1_3075777_3076167_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP010133.1_3076238_3077603_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP010133.1_3077877_3079209_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP010133.1_3079236_3080547_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP010133.1_3080758_3080923_-	NA	NA|234aa|down_1|NZ_CP010133.1_3080945_3081647_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP010133.1_3081751_3082648_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP010133.1_3082698_3083055_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP010133.1_3083296_3083662_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP010133.1_3083954_3084941_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|131aa|down_6|NZ_CP010133.1_3085010_3085403_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP010133.1_3085588_3085888_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP010133.1_3085877_3086282_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP010133.1_3086284_3086590_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	11	3598803-3599136	3,11,1	PILER-CR,CRISPRCasFinder,CRT	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA|47aa|up_1|NZ_CP010133.1_3597512_3597653_-,NA	NA|434aa|up_9|NZ_CP010133.1_3588209_3589511_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP010133.1_3589558_3591793_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP010133.1_3591870_3592119_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP010133.1_3592118_3592454_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP010133.1_3592524_3593316_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP010133.1_3593543_3595181_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP010133.1_3595268_3596567_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP010133.1_3596626_3597499_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP010133.1_3597512_3597653_-	NA	NA|224aa|up_0|NZ_CP010133.1_3597791_3598463_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP010133.1_3599773_3601252_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP010133.1_3601278_3602556_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP010133.1_3602874_3603660_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP010133.1_3603729_3605184_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP010133.1_3605205_3606615_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP010133.1_3606592_3607372_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP010133.1_3607368_3608229_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP010133.1_3608376_3608952_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP010133.1_3608968_3609229_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP010133.1_3609219_3610491_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	12	3617376-3617709	4,12,2	PILER-CR,CRISPRCasFinder,CRT	no		DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA	NA|260aa|up_9|NZ_CP010133.1_3606592_3607372_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|up_8|NZ_CP010133.1_3607368_3608229_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_7|NZ_CP010133.1_3608376_3608952_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_6|NZ_CP010133.1_3608968_3609229_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_5|NZ_CP010133.1_3609219_3610491_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_4|NZ_CP010133.1_3610568_3610931_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_3|NZ_CP010133.1_3611249_3613049_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_2|NZ_CP010133.1_3613048_3614761_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_1|NZ_CP010133.1_3614835_3615570_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_0|NZ_CP010133.1_3615834_3615987_+	pfam01848, HOK_GEF, Hok/gef family	NA|346aa|down_0|NZ_CP010133.1_3617790_3618828_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP010133.1_3619079_3619988_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP010133.1_3619989_3621417_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP010133.1_3621416_3622022_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP010133.1_3622071_3622395_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP010133.1_3622588_3622900_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP010133.1_3622918_3623629_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP010133.1_3623628_3624108_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP010133.1_3624104_3625154_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP010133.1_3625134_3625896_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001900355.1_ASM190035v1	NZ_CP010133	Escherichia coli strain C11 chromosome, complete genome	13	4769555-4769678	13	CRISPRCasFinder	no	DEDDh	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,DEDDh,WYL,c2c9_V-U4,cas3,csa3,PD-DExK	NA,NA|30aa|down_7|NZ_CP010133.1_4778574_4778664_+	NA|471aa|up_9|NZ_CP010133.1_4759008_4760421_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP010133.1_4760977_4761187_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP010133.1_4761642_4762269_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP010133.1_4762289_4764392_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP010133.1_4764404_4765043_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP010133.1_4765106_4765775_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP010133.1_4765771_4766557_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP010133.1_4766560_4767373_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP010133.1_4767384_4768989_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP010133.1_4769114_4769420_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP010133.1_4769992_4771249_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP010133.1_4771289_4772663_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP010133.1_4772877_4773519_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP010133.1_4773558_4774707_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP010133.1_4774997_4776209_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP010133.1_4776321_4777254_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP010133.1_4777250_4778276_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP010133.1_4778574_4778664_+	NA	NA|390aa|down_8|NZ_CP010133.1_4778829_4779999_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP010133.1_4780144_4780726_-	PRK10543, PRK10543, superoxide dismutase [Fe]
