assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001900185.1_ASM190018v1	NZ_CP018205	Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome	1	375412-375512	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_8|NZ_CP018205.1_366984_367194_-,NA|128aa|up_6|NZ_CP018205.1_368018_368402_-,NA|34aa|up_0|NZ_CP018205.1_374636_374738_+,NA|221aa|down_1|NZ_CP018205.1_376602_377265_-,NA|179aa|down_7|NZ_CP018205.1_383356_383893_-	NA|84aa|up_9|NZ_CP018205.1_366694_366946_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP018205.1_366984_367194_-	NA	NA|194aa|up_7|NZ_CP018205.1_367371_367953_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP018205.1_368018_368402_-	NA	NA|209aa|up_5|NZ_CP018205.1_368656_369283_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP018205.1_369727_371251_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP018205.1_371266_371836_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP018205.1_372327_373083_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP018205.1_373163_374552_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP018205.1_374636_374738_+	NA	NA|319aa|down_0|NZ_CP018205.1_375528_376485_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP018205.1_376602_377265_-	NA	NA|136aa|down_2|NZ_CP018205.1_377407_377815_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP018205.1_378327_378906_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP018205.1_378905_380174_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP018205.1_380211_381678_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP018205.1_381702_383244_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP018205.1_383356_383893_-	NA	NA|235aa|down_8|NZ_CP018205.1_384285_384990_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP018205.1_385388_385661_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_001900185.1_ASM190018v1	NZ_CP018205	Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome	2	604868-604960	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP018205.1_601351_601459_+,NA|169aa|down_4|NZ_CP018205.1_608707_609214_+,NA|239aa|down_5|NZ_CP018205.1_609375_610092_+	NA|313aa|up_9|NZ_CP018205.1_595553_596492_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP018205.1_596702_597239_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP018205.1_597407_597884_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP018205.1_597923_599219_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP018205.1_599246_599768_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP018205.1_600266_601277_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP018205.1_601351_601459_+	NA	NA|139aa|up_2|NZ_CP018205.1_601551_601968_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP018205.1_601964_603626_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP018205.1_604014_604650_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP018205.1_605028_605916_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP018205.1_606063_607014_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP018205.1_607068_607788_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP018205.1_607771_608572_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP018205.1_608707_609214_+	NA	NA|239aa|down_5|NZ_CP018205.1_609375_610092_+	NA	NA|263aa|down_6|NZ_CP018205.1_610260_611049_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP018205.1_611299_611674_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP018205.1_612621_613551_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP018205.1_613745_613970_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001900185.1_ASM190018v1	NZ_CP018205	Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome	3	668128-668226	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP018205.1_666155_666272_+,NA|230aa|down_2|NZ_CP018205.1_670047_670737_-,NA|100aa|down_5|NZ_CP018205.1_671906_672206_+	NA|336aa|up_9|NZ_CP018205.1_657935_658943_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP018205.1_659530_660328_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP018205.1_660688_661333_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP018205.1_662029_664180_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP018205.1_664325_664685_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP018205.1_664874_665591_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP018205.1_665590_666064_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP018205.1_666155_666272_+	NA	NA|215aa|up_1|NZ_CP018205.1_666416_667061_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP018205.1_667176_668043_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP018205.1_668243_669464_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP018205.1_669460_669949_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP018205.1_670047_670737_-	NA	NA|148aa|down_3|NZ_CP018205.1_670863_671307_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|NZ_CP018205.1_671373_671769_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|NZ_CP018205.1_671906_672206_+	NA	NA|181aa|down_6|NZ_CP018205.1_672285_672828_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP018205.1_672923_673490_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP018205.1_673491_673950_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP018205.1_673952_674636_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_001900185.1_ASM190018v1	NZ_CP018205	Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome	4	810357-810438	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	810381-810414|810381-810414	NZ_CP018205.1_1285582-1285549|NZ_CP018205.1_1373991-1374024	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_CP018205.1_803460_804042_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP018205.1_804114_804732_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP018205.1_804886_805381_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP018205.1_805779_806202_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP018205.1_806349_807066_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP018205.1_807148_807688_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP018205.1_807837_808158_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP018205.1_808301_808658_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP018205.1_808815_809196_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP018205.1_809374_810253_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP018205.1_810994_811381_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP018205.1_811373_811670_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP018205.1_811919_812945_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP018205.1_812937_813633_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP018205.1_813650_814472_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP018205.1_814825_815020_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP018205.1_815252_816104_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP018205.1_816431_817193_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP018205.1_817290_818598_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP018205.1_818703_819954_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_001900185.1_ASM190018v1	NZ_CP018205	Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome	5	859212-859494	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	9	859242-859267|859242-859267|859242-859267|859242-859267|859242-859267|859242-859267|859356-859381|859356-859381|859356-859381	NZ_CP018205.1_767106-767081|NZ_CP018205.1_859186-859211|NZ_CP018205.1_730501-730526|NZ_CP018205.1_1077383-1077408|NZ_CP018205.1_2777230-2777205|NZ_CP018205.1_2777286-2777261|NZ_CP018205.1_767162-767137|NZ_CP018205.1_767218-767193|NZ_CP018205.1_336799-336824	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP018205.1_848100_849597_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP018205.1_849589_849931_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP018205.1_849930_850359_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP018205.1_850351_852757_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP018205.1_852887_853271_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP018205.1_853334_853928_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP018205.1_854343_854721_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP018205.1_855082_856210_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP018205.1_856517_857708_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP018205.1_857816_859061_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP018205.1_859563_860493_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP018205.1_860734_862114_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP018205.1_862103_863309_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP018205.1_863659_864991_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP018205.1_865315_865891_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP018205.1_865895_866420_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP018205.1_866435_867011_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP018205.1_867170_870647_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP018205.1_870647_874301_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP018205.1_874466_875369_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001900185.1_ASM190018v1	NZ_CP018205	Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome	6	992896-992983	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP018205.1_992992_993127_-,NA|432aa|down_1|NZ_CP018205.1_993278_994574_+	NA|224aa|up_9|NZ_CP018205.1_980686_981358_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP018205.1_981350_983540_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP018205.1_983518_985003_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP018205.1_984995_986024_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP018205.1_986026_986593_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP018205.1_986607_988086_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP018205.1_988107_989355_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP018205.1_989619_990426_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP018205.1_990418_991819_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP018205.1_991833_992409_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP018205.1_992992_993127_-	NA	NA|432aa|down_1|NZ_CP018205.1_993278_994574_+	NA	NA|391aa|down_2|NZ_CP018205.1_994998_996171_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP018205.1_996224_996767_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP018205.1_996920_997187_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP018205.1_997189_998908_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP018205.1_999144_999378_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP018205.1_999575_1000937_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP018205.1_1000933_1001953_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP018205.1_1002085_1002748_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001900185.1_ASM190018v1	NZ_CP018205	Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome	7	1775278-1775488	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	27	1775316-1775336|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775375-1775394|1775433-1775450	NZ_CP018205.1_1775257-1775277|NZ_CP018205.1_115357-115376|NZ_CP018205.1_258555-258574|NZ_CP018205.1_336930-336949|NZ_CP018205.1_761655-761636|NZ_CP018205.1_761710-761691|NZ_CP018205.1_767315-767296|NZ_CP018205.1_767373-767354|NZ_CP018205.1_767431-767412|NZ_CP018205.1_810454-810435|NZ_CP018205.1_878912-878893|NZ_CP018205.1_1002898-1002879|NZ_CP018205.1_1285450-1285469|NZ_CP018205.1_1374123-1374104|NZ_CP018205.1_1596518-1596499|NZ_CP018205.1_1775202-1775221|NZ_CP018205.1_1977126-1977107|NZ_CP018205.1_2526359-2526378|NZ_CP018205.1_2777324-2777305|NZ_CP018205.1_258609-258628|NZ_CP018205.1_774521-774502|NZ_CP018205.1_1077345-1077364|NZ_CP018205.1_1334795-1334776|NZ_CP018205.1_1630484-1630465|NZ_CP018205.1_1986475-1986456|NZ_CP018205.1_735101-735120|NZ_CP018205.1_1775260-1775277	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|NZ_CP018205.1_1765797_1766394_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP018205.1_1766422_1767280_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP018205.1_1767379_1767691_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP018205.1_1767755_1768832_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP018205.1_1768918_1769230_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP018205.1_1769354_1770197_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP018205.1_1770666_1771311_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP018205.1_1771325_1772117_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP018205.1_1772666_1773515_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP018205.1_1773518_1774928_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP018205.1_1775791_1776214_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP018205.1_1776230_1776926_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP018205.1_1776922_1778584_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP018205.1_1778990_1780259_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP018205.1_1780375_1786936_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP018205.1_1787278_1787590_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NZ_CP018205.1_1787611_1790029_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP018205.1_1790316_1791498_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP018205.1_1791607_1792561_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP018205.1_1792557_1793121_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_001900185.1_ASM190018v1	NZ_CP018205	Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome	8	1975677-1975755	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	1975700-1975732|1975700-1975732|1975700-1975732|1975700-1975732|1975700-1975732|1975700-1975732	NZ_CP018205.1_767117-767149|NZ_CP018205.1_767173-767205|NZ_CP018205.1_1285536-1285504|NZ_CP018205.1_1596548-1596580|NZ_CP018205.1_2611930-2611962|NZ_CP018205.1_1374037-1374069	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP018205.1_1969871_1970147_+,NA|129aa|up_1|NZ_CP018205.1_1974132_1974519_-,NA|138aa|down_1|NZ_CP018205.1_1977438_1977852_-,NA|37aa|down_2|NZ_CP018205.1_1977880_1977991_-,NA|31aa|down_6|NZ_CP018205.1_1980996_1981089_-	NA|419aa|up_9|NZ_CP018205.1_1967794_1969051_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP018205.1_1969053_1969254_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP018205.1_1969400_1969865_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP018205.1_1969871_1970147_+	NA	NA|406aa|up_5|NZ_CP018205.1_1970424_1971642_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP018205.1_1971757_1972387_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP018205.1_1972376_1973420_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP018205.1_1973416_1974118_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP018205.1_1974132_1974519_-	NA	NA|253aa|up_0|NZ_CP018205.1_1974735_1975494_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP018205.1_1976021_1977008_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP018205.1_1977438_1977852_-	NA	NA|37aa|down_2|NZ_CP018205.1_1977880_1977991_-	NA	NA|244aa|down_3|NZ_CP018205.1_1978076_1978808_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP018205.1_1978809_1980123_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP018205.1_1980414_1980915_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP018205.1_1980996_1981089_-	NA	DEDDh|185aa|down_7|NZ_CP018205.1_1981303_1981858_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP018205.1_1981925_1982996_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP018205.1_1983242_1983773_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001900185.1_ASM190018v1	NZ_CP018205	Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome	9	2210491-2210580	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_4|NZ_CP018205.1_2205362_2205593_-,NA|364aa|up_0|NZ_CP018205.1_2209382_2210474_+,NA|35aa|down_0|NZ_CP018205.1_2210916_2211021_-,NA|31aa|down_2|NZ_CP018205.1_2213132_2213225_+	NA|221aa|up_9|NZ_CP018205.1_2199995_2200658_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|237aa|up_8|NZ_CP018205.1_2200972_2201683_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_7|NZ_CP018205.1_2201803_2202247_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_6|NZ_CP018205.1_2202446_2202860_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_5|NZ_CP018205.1_2203317_2204691_-	pfam01878, EVE, EVE domain	NA|77aa|up_4|NZ_CP018205.1_2205362_2205593_-	NA	NA|222aa|up_3|NZ_CP018205.1_2206997_2207663_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP018205.1_2207814_2208135_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP018205.1_2208136_2209117_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP018205.1_2209382_2210474_+	NA	NA|35aa|down_0|NZ_CP018205.1_2210916_2211021_-	NA	NA|379aa|down_1|NZ_CP018205.1_2211707_2212844_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP018205.1_2213132_2213225_+	NA	NA|286aa|down_3|NZ_CP018205.1_2213929_2214787_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP018205.1_2214854_2215637_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP018205.1_2215868_2217674_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP018205.1_2218354_2219893_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP018205.1_2219927_2222060_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP018205.1_2222071_2222506_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP018205.1_2222505_2223612_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001900185.1_ASM190018v1	NZ_CP018205	Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome	10	2334515-2334708	3	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	14	2334538-2334570|2334538-2334570|2334538-2334570|2334538-2334570|2334538-2334570|2334594-2334629|2334594-2334629|2334594-2334629|2334594-2334629|2334653-2334685|2334653-2334685|2334653-2334685|2334653-2334685|2334653-2334685	NZ_CP018205.1_767117-767149|NZ_CP018205.1_767173-767205|NZ_CP018205.1_1285536-1285504|NZ_CP018205.1_1374037-1374069|NZ_CP018205.1_2611930-2611962|NZ_CP018205.1_1077376-1077341|NZ_CP018205.1_1775233-1775198|NZ_CP018205.1_1596487-1596522|NZ_CP018205.1_1986444-1986479|NZ_CP018205.1_767061-767093|NZ_CP018205.1_767117-767149|NZ_CP018205.1_767173-767205|NZ_CP018205.1_1285536-1285504|NZ_CP018205.1_2611930-2611962	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP018205.1_2325040_2325205_+,NA|106aa|up_8|NZ_CP018205.1_2325449_2325767_+,NA|84aa|up_5|NZ_CP018205.1_2330891_2331143_+,NA|57aa|up_0|NZ_CP018205.1_2334284_2334455_+,NA	NA|55aa|up_9|NZ_CP018205.1_2325040_2325205_+	NA	NA|106aa|up_8|NZ_CP018205.1_2325449_2325767_+	NA	NA|1056aa|up_7|NZ_CP018205.1_2325953_2329121_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP018205.1_2329237_2330503_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP018205.1_2330891_2331143_+	NA	NA|255aa|up_4|NZ_CP018205.1_2331134_2331899_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP018205.1_2332060_2332501_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP018205.1_2332493_2333705_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP018205.1_2333808_2334159_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP018205.1_2334284_2334455_+	NA	NA|341aa|down_0|NZ_CP018205.1_2334849_2335872_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP018205.1_2335891_2336491_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP018205.1_2336497_2336731_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP018205.1_2336736_2337183_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP018205.1_2337196_2337682_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP018205.1_2337678_2338938_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP018205.1_2339000_2339495_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP018205.1_2339496_2340003_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP018205.1_2340033_2341038_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP018205.1_2341207_2341813_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
