assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	1	333372-334170	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP018304.1_332887_333070_-,NA	NA|398aa|up_9|NZ_CP018304.1_323065_324259_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP018304.1_324294_325977_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP018304.1_325993_328189_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP018304.1_328302_329436_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP018304.1_329432_330053_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP018304.1_330149_330731_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP018304.1_330660_331386_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP018304.1_331475_332396_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP018304.1_332435_332864_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP018304.1_332887_333070_-	NA	NA|887aa|down_0|NZ_CP018304.1_336235_338896_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP018304.1_339186_340797_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP018304.1_340820_341729_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP018304.1_341952_343848_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP018304.1_343844_345461_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP018304.1_345457_349450_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP018304.1_349446_349755_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP018304.1_349757_351299_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP018304.1_351347_351641_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP018304.1_351670_351961_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	2	334555-334666	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGTTGCCGATCA	25	1	6	334625-334641|334625-334641|334625-334641|334625-334641|334625-334641|334625-334641	NZ_CP018304.1_838200-838184|NZ_CP018304.1_1188178-1188194|NZ_CP018304.1_1212074-1212058|NZ_CP018304.1_2414289-2414305|NZ_CP018304.1_2794072-2794088|NZ_CP018304.1_4010578-4010594	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP018304.1_332887_333070_-,NA	NA|398aa|up_9|NZ_CP018304.1_323065_324259_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP018304.1_324294_325977_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP018304.1_325993_328189_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP018304.1_328302_329436_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP018304.1_329432_330053_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP018304.1_330149_330731_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP018304.1_330660_331386_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP018304.1_331475_332396_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP018304.1_332435_332864_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP018304.1_332887_333070_-	NA	NA|887aa|down_0|NZ_CP018304.1_336235_338896_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP018304.1_339186_340797_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP018304.1_340820_341729_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP018304.1_341952_343848_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP018304.1_343844_345461_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP018304.1_345457_349450_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP018304.1_349446_349755_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP018304.1_349757_351299_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP018304.1_351347_351641_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP018304.1_351670_351961_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	3	366285-366983	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366573-366614|366648-366680	NZ_CP018304.1_374619-374660|NZ_CP018304.1_373434-373466	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP018304.1_363298_363601_+,NA|161aa|down_1|NZ_CP018304.1_376408_376891_-	NA|262aa|up_9|NZ_CP018304.1_357993_358779_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP018304.1_358767_359571_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP018304.1_359580_360978_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP018304.1_361156_362932_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP018304.1_363074_363302_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP018304.1_363298_363601_+	NA	NA|74aa|up_3|NZ_CP018304.1_363648_363870_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP018304.1_363866_364292_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP018304.1_364426_365059_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP018304.1_365055_365964_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP018304.1_375749_376421_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP018304.1_376408_376891_-	NA	NA|239aa|down_2|NZ_CP018304.1_376948_377665_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP018304.1_377766_378423_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP018304.1_378492_378984_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|621aa|down_5|NZ_CP018304.1_380389_382252_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_6|NZ_CP018304.1_382323_382710_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_7|NZ_CP018304.1_382712_383375_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_8|NZ_CP018304.1_383435_384320_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]	NA|205aa|down_9|NZ_CP018304.1_384368_384983_+	COG4829, CatC1, Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	4	577621-577738	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GATGACCTGCGCCGACGACGATGCAGAGCGTAGCGATGAGG	41	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|110aa|down_2|NZ_CP018304.1_580317_580647_-,NA|330aa|down_3|NZ_CP018304.1_580643_581633_-,NA|297aa|down_5|NZ_CP018304.1_582366_583257_-,NA|311aa|down_7|NZ_CP018304.1_584319_585252_+	NA|281aa|up_9|NZ_CP018304.1_566119_566962_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|175aa|up_8|NZ_CP018304.1_567031_567556_-	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|370aa|up_7|NZ_CP018304.1_567582_568692_+	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|452aa|up_6|NZ_CP018304.1_568753_570109_+	pfam17964, Big_10, Bacterial Ig domain	NA|252aa|up_5|NZ_CP018304.1_570089_570845_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|439aa|up_4|NZ_CP018304.1_571027_572344_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|481aa|up_3|NZ_CP018304.1_572391_573834_+	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	NA|184aa|up_2|NZ_CP018304.1_573830_574382_+	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|202aa|up_1|NZ_CP018304.1_574707_575313_+	TIGR00948, Hypothetical_protein_Rv0488/MT0507/Mb0498	NA|250aa|up_0|NZ_CP018304.1_575469_576219_+	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|228aa|down_0|NZ_CP018304.1_577751_578435_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|630aa|down_1|NZ_CP018304.1_578431_580321_-	pfam00732, GMC_oxred_N, GMC oxidoreductase	NA|110aa|down_2|NZ_CP018304.1_580317_580647_-	NA	NA|330aa|down_3|NZ_CP018304.1_580643_581633_-	NA	NA|243aa|down_4|NZ_CP018304.1_581637_582366_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|297aa|down_5|NZ_CP018304.1_582366_583257_-	NA	NA|329aa|down_6|NZ_CP018304.1_583336_584323_+	pfam02541, Ppx-GppA, Ppx/GppA phosphatase family	NA|311aa|down_7|NZ_CP018304.1_584319_585252_+	NA	NA|281aa|down_8|NZ_CP018304.1_585267_586110_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|292aa|down_9|NZ_CP018304.1_586125_587001_+	pfam13622, 4HBT_3, Thioesterase-like superfamily
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	5	628309-628446	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	628327-628344|628327-628344|628411-628428	NZ_CP018304.1_22466-22483|NZ_CP018304.1_1410618-1410635|NZ_CP018304.1_970671-970688	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP018304.1_619063_619225_-,NA|478aa|up_0|NZ_CP018304.1_625324_626758_-,NA|450aa|down_2|NZ_CP018304.1_630081_631431_-,NA|93aa|down_5|NZ_CP018304.1_632961_633240_-	NA|325aa|up_9|NZ_CP018304.1_616833_617808_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP018304.1_617849_619067_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP018304.1_619063_619225_-	NA	NA|106aa|up_6|NZ_CP018304.1_619271_619589_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|623aa|up_5|NZ_CP018304.1_619735_621604_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP018304.1_621499_622507_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP018304.1_622588_623467_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP018304.1_623483_624278_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP018304.1_624274_625315_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP018304.1_625324_626758_-	NA	NA|211aa|down_0|NZ_CP018304.1_628769_629402_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP018304.1_629398_630061_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP018304.1_630081_631431_-	NA	NA|381aa|down_3|NZ_CP018304.1_631442_632585_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP018304.1_632599_632902_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP018304.1_632961_633240_-	NA	NA|418aa|down_6|NZ_CP018304.1_633236_634490_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP018304.1_634609_634996_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP018304.1_635058_635943_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP018304.1_636038_636941_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	6	689043-689119	3	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP018304.1_674727_674943_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP018304.1_674939_675347_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP018304.1_675406_676093_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP018304.1_676246_678880_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP018304.1_678902_681290_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP018304.1_681427_682150_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP018304.1_682146_682944_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP018304.1_682945_683833_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP018304.1_683838_685053_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP018304.1_686076_687522_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP018304.1_690254_691805_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP018304.1_691856_692249_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP018304.1_692245_692503_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP018304.1_692685_693921_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP018304.1_694171_694585_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP018304.1_694581_694818_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP018304.1_694921_695428_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP018304.1_695541_696012_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP018304.1_696055_696817_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP018304.1_696873_697185_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	7	922804-923751	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	923587-923622|923587-923622|923587-923622	NZ_CP018304.1_672146-672111|NZ_CP018304.1_1212355-1212390|NZ_CP018304.1_2414602-2414567	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP018304.1_927761_928313_-,NA|81aa|down_9|NZ_CP018304.1_935134_935377_+	NA|390aa|up_9|NZ_CP018304.1_912669_913839_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_8|NZ_CP018304.1_913926_914943_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_7|NZ_CP018304.1_915104_915746_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_6|NZ_CP018304.1_915826_916882_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_5|NZ_CP018304.1_916933_917326_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_4|NZ_CP018304.1_917383_917806_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_3|NZ_CP018304.1_917767_918058_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_2|NZ_CP018304.1_918162_919068_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NZ_CP018304.1_919086_919902_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|138aa|up_0|NZ_CP018304.1_921143_921557_+	pfam00934, PE, PE family	NA|883aa|down_0|NZ_CP018304.1_924020_926669_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP018304.1_927136_927781_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP018304.1_927761_928313_-	NA	NA|421aa|down_3|NZ_CP018304.1_928430_929692_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|218aa|down_4|NZ_CP018304.1_929820_930474_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_5|NZ_CP018304.1_930544_931573_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_6|NZ_CP018304.1_932261_933032_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_7|NZ_CP018304.1_933118_933931_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_8|NZ_CP018304.1_933998_934859_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_9|NZ_CP018304.1_935134_935377_+	NA
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	8	1189904-1190012	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP018304.1_1179274_1180906_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP018304.1_1180981_1182046_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP018304.1_1182098_1182572_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP018304.1_1182605_1183469_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP018304.1_1183473_1184331_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP018304.1_1184331_1185414_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP018304.1_1185494_1185914_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP018304.1_1186025_1186592_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP018304.1_1186588_1186984_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|667aa|up_0|NZ_CP018304.1_1187011_1189012_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP018304.1_1191097_1192861_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP018304.1_1192857_1193631_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP018304.1_1193642_1194680_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP018304.1_1194866_1195703_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP018304.1_1195818_1196670_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP018304.1_1196743_1197961_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP018304.1_1198013_1198958_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_7|NZ_CP018304.1_1199354_1200248_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP018304.1_1200304_1201699_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP018304.1_1201900_1202623_+	pfam06271, RDD, RDD family
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	9	1210538-1211367	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	3	72	1210921-1210945|1210921-1210945|1210921-1210945|1210921-1210945|1210921-1210945|1211077-1211098|1211077-1211098|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212|1211194-1211212	NZ_CP018304.1_334344-334320|NZ_CP018304.1_337283-337259|NZ_CP018304.1_1571765-1571741|NZ_CP018304.1_3909179-3909203|NZ_CP018304.1_3922371-3922395|NZ_CP018304.1_834984-835005|NZ_CP018304.1_1216250-1216271|NZ_CP018304.1_671810-671792|NZ_CP018304.1_1212037-1212055|NZ_CP018304.1_1216223-1216241|NZ_CP018304.1_1216295-1216313|NZ_CP018304.1_1629100-1629082|NZ_CP018304.1_1631953-1631935|NZ_CP018304.1_1978800-1978782|NZ_CP018304.1_2049080-2049062|NZ_CP018304.1_2049527-2049509|NZ_CP018304.1_2049626-2049608|NZ_CP018304.1_2790989-2790971|NZ_CP018304.1_2794517-2794499|NZ_CP018304.1_150105-150123|NZ_CP018304.1_334737-334719|NZ_CP018304.1_337805-337787|NZ_CP018304.1_338258-338240|NZ_CP018304.1_338309-338291|NZ_CP018304.1_338318-338300|NZ_CP018304.1_362876-362858|NZ_CP018304.1_443187-443169|NZ_CP018304.1_543925-543907|NZ_CP018304.1_621010-621028|NZ_CP018304.1_621232-621250|NZ_CP018304.1_670976-670958|NZ_CP018304.1_837767-837785|NZ_CP018304.1_1089768-1089786|NZ_CP018304.1_1090416-1090434|NZ_CP018304.1_1094486-1094468|NZ_CP018304.1_1211566-1211584|NZ_CP018304.1_1211956-1211974|NZ_CP018304.1_1212244-1212262|NZ_CP018304.1_1212262-1212280|NZ_CP018304.1_1216586-1216604|NZ_CP018304.1_1487648-1487630|NZ_CP018304.1_1617517-1617499|NZ_CP018304.1_1634673-1634655|NZ_CP018304.1_1634682-1634664|NZ_CP018304.1_1853702-1853684|NZ_CP018304.1_1854230-1854212|NZ_CP018304.1_1978074-1978056|NZ_CP018304.1_1989037-1989055|NZ_CP018304.1_2076350-2076332|NZ_CP018304.1_2295753-2295735|NZ_CP018304.1_2349275-2349257|NZ_CP018304.1_2410428-2410446|NZ_CP018304.1_2414515-2414497|NZ_CP018304.1_2558595-2558577|NZ_CP018304.1_2683714-2683732|NZ_CP018304.1_2784304-2784286|NZ_CP018304.1_2784886-2784868|NZ_CP018304.1_3042118-3042136|NZ_CP018304.1_3042217-3042235|NZ_CP018304.1_3691140-3691158|NZ_CP018304.1_3723159-3723141|NZ_CP018304.1_3723783-3723765|NZ_CP018304.1_3724026-3724008|NZ_CP018304.1_3724159-3724141|NZ_CP018304.1_3786582-3786600|NZ_CP018304.1_3786765-3786783|NZ_CP018304.1_3786933-3786951|NZ_CP018304.1_3908163-3908181|NZ_CP018304.1_3909893-3909911|NZ_CP018304.1_3917140-3917158|NZ_CP018304.1_4005348-4005330|NZ_CP018304.1_4069231-4069249	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP018304.1_1205970_1206237_+,NA|61aa|down_3|NZ_CP018304.1_1213830_1214013_+,NA|35aa|down_4|NZ_CP018304.1_1214122_1214227_+	NA|465aa|up_9|NZ_CP018304.1_1200304_1201699_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP018304.1_1201900_1202623_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP018304.1_1202654_1203821_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP018304.1_1203891_1204386_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP018304.1_1204571_1205006_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP018304.1_1205107_1205974_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP018304.1_1205970_1206237_+	NA	NA|674aa|up_2|NZ_CP018304.1_1206223_1208245_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP018304.1_1208343_1209072_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP018304.1_1209182_1209971_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP018304.1_1212645_1212966_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP018304.1_1213118_1213553_+	pfam00934, PE, PE family	NA|63aa|down_2|NZ_CP018304.1_1213630_1213819_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP018304.1_1213830_1214013_+	NA	NA|35aa|down_4|NZ_CP018304.1_1214122_1214227_+	NA	NA|152aa|down_5|NZ_CP018304.1_1214204_1214660_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|835aa|down_6|NZ_CP018304.1_1215074_1217579_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP018304.1_1217796_1218735_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP018304.1_1219122_1220403_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP018304.1_1220507_1221335_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	10	1570624-1571695	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP018304.1_1562387_1562705_+,NA	NA|103aa|up_9|NZ_CP018304.1_1559902_1560211_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP018304.1_1560207_1561827_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP018304.1_1562387_1562705_+	NA	NA|209aa|up_6|NZ_CP018304.1_1562839_1563466_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP018304.1_1563531_1563864_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP018304.1_1563879_1565136_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP018304.1_1565263_1566475_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP018304.1_1566547_1568026_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP018304.1_1568022_1569408_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP018304.1_1569485_1570520_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP018304.1_1572549_1572951_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP018304.1_1572947_1573205_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP018304.1_1573287_1574247_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP018304.1_1574271_1575234_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP018304.1_1575367_1575970_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP018304.1_1576050_1578018_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP018304.1_1578035_1578860_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP018304.1_1579028_1579511_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP018304.1_1579582_1580407_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP018304.1_1580603_1581542_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	11	1635251-1635477	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP018304.1_1621525_1621639_-,NA|137aa|up_7|NZ_CP018304.1_1621688_1622099_-,NA|288aa|down_2|NZ_CP018304.1_1639303_1640167_+	NA|162aa|up_9|NZ_CP018304.1_1620608_1621094_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP018304.1_1621525_1621639_-	NA	NA|137aa|up_7|NZ_CP018304.1_1621688_1622099_-	NA	NA|248aa|up_6|NZ_CP018304.1_1622115_1622859_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP018304.1_1622855_1623767_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP018304.1_1623819_1625364_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP018304.1_1625360_1626482_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP018304.1_1626498_1628601_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1408aa|up_1|NZ_CP018304.1_1629039_1633263_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP018304.1_1633664_1634591_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP018304.1_1637004_1638270_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP018304.1_1638297_1639284_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP018304.1_1639303_1640167_+	NA	NA|311aa|down_3|NZ_CP018304.1_1640116_1641049_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP018304.1_1641160_1641946_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP018304.1_1641942_1642884_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP018304.1_1642986_1644762_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP018304.1_1644809_1645616_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP018304.1_1645612_1648153_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP018304.1_1648149_1649343_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	12	2075822-2076076	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2075903-2075920|2075903-2075920|2075993-2076010	NZ_CP018304.1_400913-400896|NZ_CP018304.1_604381-604364|NZ_CP018304.1_3437230-3437213	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP018304.1_2075181_2075445_-,NA	NA|165aa|up_9|NZ_CP018304.1_2061475_2061970_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP018304.1_2062373_2063051_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP018304.1_2063409_2066235_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP018304.1_2066461_2067322_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP018304.1_2067362_2068229_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP018304.1_2068233_2070120_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP018304.1_2070135_2072169_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP018304.1_2072288_2074514_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP018304.1_2074789_2075185_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP018304.1_2075181_2075445_-	NA	NA|346aa|down_0|NZ_CP018304.1_2077213_2078251_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP018304.1_2078250_2079618_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP018304.1_2079791_2081228_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP018304.1_2081263_2082715_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP018304.1_2082744_2083695_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP018304.1_2083709_2084126_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP018304.1_2084403_2084826_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP018304.1_2084874_2085177_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP018304.1_2085173_2085488_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP018304.1_2085487_2087221_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	13	2156055-2156274	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP018304.1_2147518_2147926_-,NA|127aa|down_5|NZ_CP018304.1_2163790_2164171_-	NA|741aa|up_9|NZ_CP018304.1_2141486_2143709_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP018304.1_2143746_2144190_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP018304.1_2144303_2144897_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP018304.1_2144979_2145585_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP018304.1_2145684_2146689_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP018304.1_2146788_2147541_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP018304.1_2147518_2147926_-	NA	NA|368aa|up_2|NZ_CP018304.1_2148060_2149164_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP018304.1_2149163_2150360_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1341aa|up_0|NZ_CP018304.1_2150529_2154552_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP018304.1_2158301_2158766_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP018304.1_2158863_2159727_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP018304.1_2159764_2161036_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP018304.1_2161307_2162423_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP018304.1_2162413_2163754_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP018304.1_2163790_2164171_-	NA	NA|621aa|down_6|NZ_CP018304.1_2164327_2166190_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP018304.1_2166197_2166677_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP018304.1_2166913_2167687_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP018304.1_2167690_2168458_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	14	3106709-3107991	3,8,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-C,Type III-A,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,16,17	17	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP018304.1_3099988_3100243_-,NA|135aa|up_7|NZ_CP018304.1_3100390_3100795_+,NA|64aa|up_6|NZ_CP018304.1_3100791_3100983_+,NA|86aa|up_4|NZ_CP018304.1_3102569_3102827_+,NA|104aa|up_3|NZ_CP018304.1_3102931_3103243_+,NA|203aa|up_2|NZ_CP018304.1_3103662_3104271_+,NA	NA|92aa|up_9|NZ_CP018304.1_3099537_3099813_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP018304.1_3099988_3100243_-	NA	NA|135aa|up_7|NZ_CP018304.1_3100390_3100795_+	NA	NA|64aa|up_6|NZ_CP018304.1_3100791_3100983_+	NA	NA|385aa|up_5|NZ_CP018304.1_3101181_3102336_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP018304.1_3102569_3102827_+	NA	NA|104aa|up_3|NZ_CP018304.1_3102931_3103243_+	NA	NA|203aa|up_2|NZ_CP018304.1_3103662_3104271_+	NA	NA|470aa|up_1|NZ_CP018304.1_3104341_3105751_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP018304.1_3105747_3106560_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP018304.1_3108017_3109279_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP018304.1_3110859_3111201_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP018304.1_3111201_3112218_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP018304.1_3112230_3113379_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP018304.1_3113474_3114602_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP018304.1_3114598_3115507_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP018304.1_3115487_3116198_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP018304.1_3116207_3116582_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP018304.1_3116578_3119017_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_9|NZ_CP018304.1_3119013_3119958_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	15	3109314-3110811	9,6,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-B,Type III-C,Type III-A,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	20,20,19	20	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP018304.1_3099988_3100243_-,NA|135aa|up_8|NZ_CP018304.1_3100390_3100795_+,NA|64aa|up_7|NZ_CP018304.1_3100791_3100983_+,NA|86aa|up_5|NZ_CP018304.1_3102569_3102827_+,NA|104aa|up_4|NZ_CP018304.1_3102931_3103243_+,NA|203aa|up_3|NZ_CP018304.1_3103662_3104271_+,NA	NA|85aa|up_9|NZ_CP018304.1_3099988_3100243_-	NA	NA|135aa|up_8|NZ_CP018304.1_3100390_3100795_+	NA	NA|64aa|up_7|NZ_CP018304.1_3100791_3100983_+	NA	NA|385aa|up_6|NZ_CP018304.1_3101181_3102336_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP018304.1_3102569_3102827_+	NA	NA|104aa|up_4|NZ_CP018304.1_3102931_3103243_+	NA	NA|203aa|up_3|NZ_CP018304.1_3103662_3104271_+	NA	NA|470aa|up_2|NZ_CP018304.1_3104341_3105751_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP018304.1_3105747_3106560_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP018304.1_3108017_3109279_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP018304.1_3110859_3111201_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP018304.1_3111201_3112218_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP018304.1_3112230_3113379_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP018304.1_3113474_3114602_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP018304.1_3114598_3115507_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP018304.1_3115487_3116198_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP018304.1_3116207_3116582_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP018304.1_3116578_3119017_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NZ_CP018304.1_3119013_3119958_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP018304.1_3120135_3120681_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	16	3726185-3727032	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTNNCCGCC	23	0	0	NA	NA	NA	11	11	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP018304.1_3740904_3741192_-,NA|87aa|down_9|NZ_CP018304.1_3754312_3754573_-	NA|147aa|up_9|NZ_CP018304.1_3706882_3707323_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_8|NZ_CP018304.1_3707356_3708226_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_7|NZ_CP018304.1_3708246_3709257_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_6|NZ_CP018304.1_3709541_3710174_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_5|NZ_CP018304.1_3710240_3711470_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NZ_CP018304.1_3711752_3713102_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NZ_CP018304.1_3713113_3714253_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NZ_CP018304.1_3714249_3714981_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2538aa|up_1|NZ_CP018304.1_3714989_3722603_-	pfam00823, PPE, PPE family	NA|339aa|up_0|NZ_CP018304.1_3722651_3723668_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NZ_CP018304.1_3728775_3729033_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP018304.1_3729288_3738762_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP018304.1_3739386_3739833_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|273aa|down_3|NZ_CP018304.1_3739869_3740688_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP018304.1_3740904_3741192_-	NA	NA|3717aa|down_5|NZ_CP018304.1_3741528_3752679_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP018304.1_3752922_3753717_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP018304.1_3753798_3754170_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_8|NZ_CP018304.1_3754067_3754478_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP018304.1_3754312_3754573_-	NA
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	17	3922839-3923026	5	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCCCCGCCGGCCCCGCCGTCACCGCCGATACCG	35	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP018304.1_3927047_3927887_+	NA|64aa|up_9|NZ_CP018304.1_3900023_3900215_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|NZ_CP018304.1_3900429_3901632_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|NZ_CP018304.1_3901656_3902778_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|NZ_CP018304.1_3902848_3904357_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1277aa|up_5|NZ_CP018304.1_3904527_3908358_+	pfam00934, PE, PE family	NA|1482aa|up_4|NZ_CP018304.1_3908648_3913094_+	pfam00934, PE, PE family	NA|516aa|up_3|NZ_CP018304.1_3913260_3914808_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_2|NZ_CP018304.1_3914804_3915641_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1670aa|up_1|NZ_CP018304.1_3916000_3921010_+	pfam00934, PE, PE family	NA|219aa|up_0|NZ_CP018304.1_3921138_3921795_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP018304.1_3924440_3926087_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP018304.1_3926160_3926952_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP018304.1_3927047_3927887_+	NA	NA|399aa|down_3|NZ_CP018304.1_3927941_3929138_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP018304.1_3929166_3929877_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP018304.1_3929941_3930985_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP018304.1_3931137_3932049_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP018304.1_3932064_3933129_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP018304.1_3933145_3934330_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP018304.1_3934371_3935403_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_001895865.1_ASM189586v1	NZ_CP018304	Mycobacterium tuberculosis strain M0002959-6, complete genome	18	4085648-4085736	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP018304.1_4076234_4077005_-,NA|119aa|up_3|NZ_CP018304.1_4082139_4082496_+,NA|52aa|up_2|NZ_CP018304.1_4082595_4082751_+,NA|233aa|up_0|NZ_CP018304.1_4084752_4085451_-,NA|126aa|down_6|NZ_CP018304.1_4090971_4091349_+	NA|288aa|up_9|NZ_CP018304.1_4074616_4075480_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP018304.1_4076234_4077005_-	NA	NA|549aa|up_7|NZ_CP018304.1_4077001_4078648_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP018304.1_4078644_4079508_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP018304.1_4079500_4080427_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP018304.1_4080428_4082054_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP018304.1_4082139_4082496_+	NA	NA|52aa|up_2|NZ_CP018304.1_4082595_4082751_+	NA	NA|652aa|up_1|NZ_CP018304.1_4082761_4084717_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP018304.1_4084752_4085451_-	NA	NA|173aa|down_0|NZ_CP018304.1_4085796_4086315_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP018304.1_4086315_4087299_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP018304.1_4087291_4088485_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP018304.1_4088490_4089312_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP018304.1_4089443_4090127_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP018304.1_4090126_4090864_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP018304.1_4090971_4091349_+	NA	NA|225aa|down_7|NZ_CP018304.1_4091447_4092122_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP018304.1_4092227_4093022_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP018304.1_4093028_4093484_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
