assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001890445.1_ASM189044v1	NZ_CP016014	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003887 chromosome, complete genome	1	89665-89756	1	CRISPRCasFinder	no	cas3	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Unclear	GGGTCTACTGGCTCAGGGTCTAC	23	0	0	NA	NA	NA	1	1	Unclear	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA|31aa|up_5|NZ_CP016014.1_84739_84832_+,NA|160aa|up_4|NZ_CP016014.1_85032_85512_+,NA|38aa|up_2|NZ_CP016014.1_87038_87152_+,NA|155aa|up_0|NZ_CP016014.1_88072_88537_+,NA	NA|310aa|up_9|NZ_CP016014.1_78693_79623_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP016014.1_79665_80568_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP016014.1_81076_81772_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP016014.1_81991_84718_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP016014.1_84739_84832_+	NA	NA|160aa|up_4|NZ_CP016014.1_85032_85512_+	NA	NA|227aa|up_3|NZ_CP016014.1_85740_86421_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_CP016014.1_87038_87152_+	NA	NA|286aa|up_1|NZ_CP016014.1_87204_88062_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP016014.1_88072_88537_+	NA	NA|206aa|down_0|NZ_CP016014.1_91558_92176_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|46aa|down_1|NZ_CP016014.1_92904_93042_-	pfam01527, HTH_Tnp_1, Transposase	NA|461aa|down_2|NZ_CP016014.1_94179_95562_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_3|NZ_CP016014.1_95573_97892_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_4|NZ_CP016014.1_97994_99704_-	pfam05170, AsmA, AsmA family	NA|464aa|down_5|NZ_CP016014.1_99824_101216_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|402aa|down_6|NZ_CP016014.1_101443_102649_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	cas3|694aa|down_7|NZ_CP016014.1_102684_104766_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|230aa|down_8|NZ_CP016014.1_104771_105461_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	NA|704aa|down_9|NZ_CP016014.1_105465_107577_-	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
GCF_001890445.1_ASM189044v1	NZ_CP016014	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003887 chromosome, complete genome	2	585294-585394	2	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA|177aa|down_1|NZ_CP016014.1_586912_587443_-	NA|448aa|up_9|NZ_CP016014.1_571372_572716_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP016014.1_573343_573796_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP016014.1_573823_575326_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP016014.1_575350_578029_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP016014.1_578249_578651_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP016014.1_578650_579595_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP016014.1_579745_580015_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP016014.1_580256_582392_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP016014.1_582501_583386_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP016014.1_583491_583572_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP016014.1_585607_586852_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP016014.1_586912_587443_-	NA	NA|240aa|down_2|NZ_CP016014.1_587601_588321_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP016014.1_588298_589306_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP016014.1_589483_590380_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP016014.1_590370_591366_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP016014.1_591582_592107_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP016014.1_592100_592604_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP016014.1_592590_592908_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP016014.1_592945_593389_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_001890445.1_ASM189044v1	NZ_CP016014	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003887 chromosome, complete genome	3	1047469-1048474	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,16,16	16	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|179aa|up_9|NZ_CP016014.1_1036016_1036553_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP016014.1_1036549_1037020_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP016014.1_1037034_1037541_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP016014.1_1037560_1038334_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP016014.1_1038346_1041046_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP016014.1_1041126_1041714_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP016014.1_1042318_1043119_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP016014.1_1043346_1044984_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP016014.1_1045066_1046365_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP016014.1_1046500_1047172_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP016014.1_1048571_1049369_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP016014.1_1049456_1049819_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP016014.1_1050254_1052054_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP016014.1_1052053_1053766_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP016014.1_1053841_1054576_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP016014.1_1054788_1055742_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP016014.1_1056185_1058849_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP016014.1_1058860_1060417_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_8|NZ_CP016014.1_1060413_1060974_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP016014.1_1060987_1062046_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_001890445.1_ASM189044v1	NZ_CP016014	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003887 chromosome, complete genome	4	1064742-1066783	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	32,33,33	33	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|245aa|up_9|NZ_CP016014.1_1053841_1054576_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP016014.1_1054788_1055742_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP016014.1_1056185_1058849_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP016014.1_1058860_1060417_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP016014.1_1060413_1060974_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP016014.1_1060987_1062046_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP016014.1_1062056_1062803_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP016014.1_1062784_1063435_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP016014.1_1063431_1064352_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP016014.1_1064351_1064645_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP016014.1_1066797_1067844_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP016014.1_1068094_1069003_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP016014.1_1069012_1070452_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP016014.1_1070438_1071044_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP016014.1_1071094_1071418_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP016014.1_1071608_1071920_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP016014.1_1071938_1072649_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP016014.1_1072648_1073128_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP016014.1_1073124_1074174_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP016014.1_1074154_1074916_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
