The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016014	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003887 chromosome, complete genome	4746969	1772603	1781774	4746969	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569165.1|1772603_1773551_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
WP_000824857.1|1773534_1774266_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1774246_1774354_-	protein YohO	NA	NA	NA	NA	NA
WP_001240417.1|1774413_1775145_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|1775367_1777053_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|1777049_1777769_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|1777815_1778283_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001197951.1|1778339_1778870_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1779041_1779500_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_000195331.1|1779740_1781774_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 2
NZ_CP016014	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003887 chromosome, complete genome	4746969	1850050	1860557	4746969		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111837.1|1850050_1851454_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
WP_000981471.1|1851631_1852525_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697840.1|1852901_1853987_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
WP_001023659.1|1853986_1854886_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
WP_000857530.1|1854933_1855812_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
WP_000973714.1|1855812_1856364_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
WP_020437413.1|1856369_1857344_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|1857359_1858133_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565902.1|1858137_1859217_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.3e-16
WP_000126351.1|1859243_1860557_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	9.1e-52
>prophage 3
NZ_CP016014	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003887 chromosome, complete genome	4746969	1951912	1959161	4746969		Morganella_phage(33.33%)	8	NA	NA
WP_000394196.1|1951912_1952332_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_023255976.1|1952334_1953603_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.9	1.2e-226
WP_000208509.1|1954057_1954270_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131109.1|1954280_1954469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001080661.1|1954726_1955920_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.2	3.0e-110
WP_000107434.1|1956570_1956882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377042.1|1956961_1957657_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_052934629.1|1957730_1959161_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 4
NZ_CP016014	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003887 chromosome, complete genome	4746969	2963813	2971126	4746969	protease	Ralstonia_phage(16.67%)	7	NA	NA
WP_001531374.1|2963813_2964191_+	hypothetical protein	NA	A0A077KET4	Ralstonia_phage	40.2	1.7e-19
WP_001117984.1|2964352_2964550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000934064.1|2964762_2967039_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000520787.1|2967069_2967390_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	3.5e-13
WP_000447499.1|2967713_2967935_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125873.1|2968064_2970011_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
WP_001201751.1|2970007_2971126_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
>prophage 5
NZ_CP016014	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003887 chromosome, complete genome	4746969	4330916	4375695	4746969	tRNA,plate,tail	Burkholderia_phage(36.36%)	47	NA	NA
WP_001182228.1|4330916_4331915_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_001039337.1|4332002_4333313_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_052934724.1|4333559_4334075_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001030592.1|4334174_4334384_-	CsbD family protein	NA	NA	NA	NA	NA
WP_001575282.1|4334405_4334519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001128116.1|4334515_4335841_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_000646079.1|4336019_4336628_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_000002902.1|4336736_4337105_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000017360.1|4337275_4339696_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000455249.1|4339794_4340667_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000019230.1|4340680_4341178_-	chorismate lyase	NA	NA	NA	NA	NA
WP_000782497.1|4341358_4342276_-	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000973678.1|4342439_4343798_-	maltoporin	NA	NA	NA	NA	NA
WP_000179176.1|4343886_4344996_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000695415.1|4345357_4346548_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_024797333.1|4346679_4348224_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_001252081.1|4348238_4349129_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000982749.1|4349294_4349705_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_052934928.1|4349847_4351944_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_023236910.1|4351943_4352681_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_168168566.1|4352677_4353346_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_001541297.1|4353379_4353622_-	outer membrane protein	NA	NA	NA	NA	NA
WP_000790025.1|4354065_4355715_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000136394.1|4356059_4357409_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000615248.1|4357539_4357887_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_001226439.1|4358463_4358751_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_052934926.1|4358753_4359359_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	2.1e-59
WP_000777266.1|4359371_4359686_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_000449435.1|4359845_4360301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000875314.1|4360297_4360495_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000729853.1|4360484_4361912_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.4e-194
WP_000907495.1|4361911_4362436_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_001003638.1|4362487_4362805_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001185655.1|4362764_4362893_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_052934925.1|4362989_4365344_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	31.0	1.6e-67
WP_020437572.1|4365343_4366297_+	hypothetical protein	NA	A4JWL1	Burkholderia_virus	51.5	1.0e-36
WP_001269716.1|4366296_4366506_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_017465889.1|4366493_4367537_+	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.9	6.5e-77
WP_017465888.1|4367546_4368269_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_000593184.1|4368596_4368959_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_020437570.1|4368955_4369885_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	3.9e-150
WP_000632048.1|4369884_4371432_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_001093501.1|4371595_4371955_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_052934924.1|4371945_4373061_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.0	2.4e-101
WP_052934923.1|4373053_4373686_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.5e-23
WP_052934922.1|4373688_4375170_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	52.2	7.9e-52
WP_001177097.1|4375179_4375695_+|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	41.2	3.4e-34
