assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001890365.1_ASM189036v1	NZ_CP018206	Escherichia coli strain MRSN346647 chromosome, complete genome	1	598698-598829	1	PILER-CR	no		DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTTCAATATTGGTGAT	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|274aa|up_9|NZ_CP018206.1_584860_585682_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|383aa|up_8|NZ_CP018206.1_586137_587286_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1073aa|up_7|NZ_CP018206.1_587303_590522_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|132aa|up_6|NZ_CP018206.1_590782_591178_+	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|197aa|up_5|NZ_CP018206.1_591296_591887_-	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|262aa|up_4|NZ_CP018206.1_591892_592678_-	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|518aa|up_3|NZ_CP018206.1_592786_594340_-	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|406aa|up_2|NZ_CP018206.1_594413_595631_-	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|381aa|up_1|NZ_CP018206.1_595759_596902_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|505aa|up_0|NZ_CP018206.1_596932_598447_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|down_0|NZ_CP018206.1_598919_599690_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|down_1|NZ_CP018206.1_599704_600646_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|down_2|NZ_CP018206.1_600696_601983_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|down_3|NZ_CP018206.1_601979_602267_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|444aa|down_4|NZ_CP018206.1_602325_603657_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|177aa|down_5|NZ_CP018206.1_603764_604295_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|down_6|NZ_CP018206.1_604287_606150_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_7|NZ_CP018206.1_606341_606821_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|78aa|down_8|NZ_CP018206.1_606906_607140_+	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|283aa|down_9|NZ_CP018206.1_607440_608289_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
GCF_001890365.1_ASM189036v1	NZ_CP018206	Escherichia coli strain MRSN346647 chromosome, complete genome	2	1385282-1385423	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|36aa|up_4|NZ_CP018206.1_1381504_1381612_-,NA	NA|354aa|up_9|NZ_CP018206.1_1374745_1375807_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|NZ_CP018206.1_1375803_1376535_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|up_7|NZ_CP018206.1_1376549_1379009_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|NZ_CP018206.1_1379059_1379626_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|NZ_CP018206.1_1380015_1381299_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP018206.1_1381504_1381612_-	NA	NA|135aa|up_3|NZ_CP018206.1_1381992_1382397_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP018206.1_1382390_1382738_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP018206.1_1382737_1384504_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP018206.1_1384519_1385236_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP018206.1_1385585_1388387_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP018206.1_1388401_1389619_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP018206.1_1389712_1390879_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP018206.1_1390878_1391748_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|302aa|down_4|NZ_CP018206.1_1392413_1393319_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|201aa|down_5|NZ_CP018206.1_1393352_1393955_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|551aa|down_6|NZ_CP018206.1_1393964_1395617_-	PRK15392, PRK15392, class I fumarate hydratase	NA|427aa|down_7|NZ_CP018206.1_1395724_1397005_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|106aa|down_8|NZ_CP018206.1_1397165_1397483_-	pfam14330, DUF4387, Domain of unknown function (DUF4387)	NA|457aa|down_9|NZ_CP018206.1_1397479_1398850_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA
GCF_001890365.1_ASM189036v1	NZ_CP018206	Escherichia coli strain MRSN346647 chromosome, complete genome	3	3679855-3680615	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGNCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	TypeI-E	DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP018206.1_3671667_3672429_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP018206.1_3672409_3673459_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP018206.1_3673455_3673935_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP018206.1_3673934_3674645_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP018206.1_3674663_3674975_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP018206.1_3675168_3675492_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP018206.1_3675541_3676147_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP018206.1_3676146_3677574_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP018206.1_3677575_3678484_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP018206.1_3678735_3679773_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP018206.1_3680711_3681005_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP018206.1_3681001_3681925_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP018206.1_3681921_3682572_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP018206.1_3682553_3683300_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP018206.1_3683310_3684366_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP018206.1_3684380_3684917_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP018206.1_3684913_3686476_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP018206.1_3686573_3689273_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP018206.1_3689467_3689620_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP018206.1_3689884_3690619_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001890365.1_ASM189036v1	NZ_CP018206	Escherichia coli strain MRSN346647 chromosome, complete genome	4	3707753-3708818	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACT	29,29,28	0	0	NA	NA	I-E:I-E:I-E	17,17,16	17	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|87aa|up_9|NZ_CP018206.1_3696224_3696485_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP018206.1_3696501_3697077_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|NZ_CP018206.1_3697211_3698560_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|287aa|up_6|NZ_CP018206.1_3698659_3699520_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP018206.1_3699516_3700296_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP018206.1_3700273_3701683_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP018206.1_3701704_3703159_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP018206.1_3703228_3704014_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP018206.1_3704332_3705610_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP018206.1_3705636_3707115_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP018206.1_3709156_3709828_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP018206.1_3710121_3710994_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|449aa|down_2|NZ_CP018206.1_3711039_3712386_-	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|433aa|down_3|NZ_CP018206.1_3712493_3713792_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP018206.1_3713879_3715517_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP018206.1_3715744_3716536_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP018206.1_3716607_3716943_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP018206.1_3716942_3717191_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP018206.1_3717268_3719503_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP018206.1_3719550_3720852_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
