assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001890305.1_ASM189030v1	NZ_CP018247	Escherichia coli strain 7784 chromosome, complete genome	1	71491-71625	1	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|251aa|up_4|NZ_CP018247.1_63444_64197_+,NA|190aa|down_7|NZ_CP018247.1_80666_81236_+	NA|274aa|up_9|NZ_CP018247.1_56579_57401_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NZ_CP018247.1_57397_58387_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NZ_CP018247.1_58386_59673_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|NZ_CP018247.1_59725_62080_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NZ_CP018247.1_62334_63150_+	PRK09430, djlA, co-chaperone DjlA	NA|251aa|up_4|NZ_CP018247.1_63444_64197_+	NA	NA|220aa|up_3|NZ_CP018247.1_64614_65274_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP018247.1_65285_68192_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP018247.1_68355_70707_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP018247.1_70781_71477_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP018247.1_71676_73179_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP018247.1_73189_74890_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP018247.1_75228_76107_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP018247.1_76192_76957_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP018247.1_77043_77742_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP018247.1_77725_79336_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP018247.1_79311_80295_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NZ_CP018247.1_80666_81236_+	NA	NA|553aa|down_8|NZ_CP018247.1_81464_83123_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NZ_CP018247.1_83211_83343_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
GCF_001890305.1_ASM189030v1	NZ_CP018247	Escherichia coli strain 7784 chromosome, complete genome	2	3498674-3498886	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP018247.1_3490486_3491248_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP018247.1_3491228_3492278_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP018247.1_3492274_3492754_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP018247.1_3492753_3493464_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP018247.1_3493482_3493794_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP018247.1_3493987_3494311_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP018247.1_3494360_3494966_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP018247.1_3494965_3496393_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP018247.1_3496394_3497303_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP018247.1_3497554_3498592_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP018247.1_3498981_3499275_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP018247.1_3499271_3500195_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP018247.1_3500191_3500842_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP018247.1_3500823_3501570_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP018247.1_3501580_3502636_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP018247.1_3502647_3503184_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP018247.1_3503180_3504743_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP018247.1_3504840_3507540_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP018247.1_3507731_3507884_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP018247.1_3508147_3508882_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001890305.1_ASM189030v1	NZ_CP018247	Escherichia coli strain 7784 chromosome, complete genome	3	3524577-3524665	3	CRISPRCasFinder	no	cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCACTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|600aa|up_9|NZ_CP018247.1_3510667_3512467_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_8|NZ_CP018247.1_3512785_3513148_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|NZ_CP018247.1_3513225_3514497_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|NZ_CP018247.1_3514487_3514748_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|NZ_CP018247.1_3514764_3515340_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|NZ_CP018247.1_3516344_3517124_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP018247.1_3518531_3519986_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP018247.1_3520055_3520841_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP018247.1_3521159_3522437_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP018247.1_3522463_3523942_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP018247.1_3525004_3525676_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NZ_CP018247.1_3525830_3526451_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|NZ_CP018247.1_3526464_3527139_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP018247.1_3527372_3528521_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NZ_CP018247.1_3528517_3529432_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP018247.1_3529491_3530790_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP018247.1_3530877_3532515_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP018247.1_3532742_3533534_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NZ_CP018247.1_3533604_3533940_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NZ_CP018247.1_3533939_3534188_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCF_001890305.1_ASM189030v1	NZ_CP018247	Escherichia coli strain 7784 chromosome, complete genome	4	5210643-5210792	4	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|579aa|up_6|NZ_CP018247.1_5201808_5203545_+,NA|245aa|down_7|NZ_CP018247.1_5219869_5220604_+	NA|238aa|up_9|NZ_CP018247.1_5199711_5200425_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP018247.1_5200495_5201089_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|NZ_CP018247.1_5201233_5201686_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|579aa|up_6|NZ_CP018247.1_5201808_5203545_+	NA	NA|335aa|up_5|NZ_CP018247.1_5203601_5204606_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP018247.1_5204767_5205184_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP018247.1_5205229_5205733_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP018247.1_5205925_5207122_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP018247.1_5207176_5210032_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP018247.1_5210031_5210475_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP018247.1_5210828_5212340_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP018247.1_5212606_5213707_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP018247.1_5213706_5214789_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP018247.1_5214949_5216452_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP018247.1_5216581_5217601_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|425aa|down_5|NZ_CP018247.1_5218045_5219320_+	PRK09692, PRK09692, integrase; Provisional	NA|102aa|down_6|NZ_CP018247.1_5219487_5219793_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|245aa|down_7|NZ_CP018247.1_5219869_5220604_+	NA	NA|415aa|down_8|NZ_CP018247.1_5220641_5221886_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|191aa|down_9|NZ_CP018247.1_5222211_5222784_-	pfam07455, Psu, Phage polarity suppression protein (Psu)
