The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013313	Vibrio cholerae strain E9120 chromosome 1, complete sequence	2961701	558772	631485	2961701	plate,tail,transposase,head,tRNA,integrase	Vibrio_phage(73.77%)	89	557355:557368	577850:577863
557355:557368	attL	TTTCCTGAAGATTT	NA	NA	NA	NA
WP_001129562.1|558772_560014_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	47.3	1.4e-105
WP_000372618.1|560399_562277_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.9	1.5e-34
WP_000907210.1|562375_564139_-	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	30.7	1.1e-44
WP_001173892.1|564228_564672_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	49.3	3.7e-29
WP_001145625.1|564701_564917_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001220122.1|565157_566177_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.4	2.6e-107
WP_001087495.1|566330_567143_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_000188027.1|567191_567818_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_000361954.1|568006_568360_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
WP_000627006.1|568356_568863_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_000119813.1|568859_569663_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_001263189.1|569777_570062_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_001061951.1|570058_570757_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000619209.1|570753_571230_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_000129752.1|571259_572345_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_000698379.1|572346_573099_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
WP_000002982.1|573091_573718_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000177568.1|573717_574653_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000116737.1|574726_575734_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001894770.1|575826_578415_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
577850:577863	attR	AAATCTTCAGGAAA	NA	NA	NA	NA
WP_001279365.1|578682_579570_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_001079835.1|579953_580955_+	thiosulfate ABC transporter substrate-binding protein CysP	NA	NA	NA	NA	NA
WP_000531810.1|581031_581883_+	sulfate/thiosulfate ABC transporter permease CysT	NA	NA	NA	NA	NA
WP_000951362.1|581893_582757_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
WP_000027776.1|582753_583884_+	sulfate/molybdate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.3e-34
WP_000853811.1|584050_584557_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	42.0	4.0e-24
WP_000344154.1|584690_585755_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	60.4	1.9e-111
WP_000006855.1|585887_586346_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000481017.1|586518_589101_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	37.0	1.6e-76
WP_001883372.1|589304_590492_+	aspartate kinase	NA	NA	NA	NA	NA
WP_000906485.1|590583_590781_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.0e-12
WP_000148780.1|592351_592612_+	oxaloacetate decarboxylase subunit gamma	NA	NA	NA	NA	NA
WP_000042727.1|592646_594434_+	sodium-extruding oxaloacetate decarboxylase subunit alpha	NA	NA	NA	NA	NA
WP_000348847.1|594443_595574_+	sodium ion-translocating decarboxylase subunit beta	NA	NA	NA	NA	NA
WP_071917789.1|596609_597149_-	hypothetical protein	NA	H9C146	Vibrio_phage	58.5	1.2e-29
WP_071917790.1|597148_598393_-	hypothetical protein	NA	H9C145	Vibrio_phage	66.4	2.6e-141
WP_000510163.1|598392_598980_-	DUF2313 domain-containing protein	NA	A0A2I7S9L6	Vibrio_phage	79.5	2.1e-93
WP_071917791.1|598964_600032_-|plate	baseplate J/gp47 family protein	plate	A0A2I7S9E5	Vibrio_phage	71.8	8.0e-147
WP_000095018.1|600021_600471_-	phage GP46 family protein	NA	M4MB61	Vibrio_phage	73.6	1.1e-54
WP_050401618.1|600473_601055_-|plate	phage baseplate assembly protein V	plate	M4MCP6	Vibrio_phage	72.6	2.1e-72
WP_071917792.1|601084_602161_-|tail	phage tail protein	tail	M4M9L5	Vibrio_phage	75.6	4.1e-159
WP_071917793.1|602153_603473_-	DNA circularization N-terminal domain-containing protein	NA	A0A2I7S9E8	Vibrio_phage	68.0	5.0e-167
WP_071917794.1|603484_605242_-|tail	phage tail tape measure protein	tail	M4MHE6	Vibrio_phage	67.3	6.0e-208
WP_071917795.1|605367_605712_-|tail	phage tail assembly protein	tail	M4MB64	Vibrio_phage	80.5	1.4e-44
WP_000024434.1|605711_606065_-|tail	phage tail tube protein	tail	A0A2I7S9D5	Vibrio_phage	68.4	8.7e-42
WP_071917796.1|606079_607564_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	M1Q565	Vibrio_phage	72.9	7.8e-209
WP_071917797.1|607566_607758_-	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
WP_000431250.1|607765_607993_-	hypothetical protein	NA	A0A076G7K2	Pseudoalteromonas_phage	73.3	1.5e-23
WP_032474387.1|608007_608607_-	hypothetical protein	NA	M4MHF0	Vibrio_phage	61.2	2.4e-68
WP_071917798.1|608603_609146_-	phage virion morphogenesis protein	NA	A0A2I7S9D7	Vibrio_phage	71.5	1.2e-69
WP_071917799.1|609145_609580_-	DUF1320 domain-containing protein	NA	A0A2I7S9E9	Vibrio_phage	81.2	5.5e-62
WP_071917800.1|609585_610161_-	hypothetical protein	NA	M4M9M3	Vibrio_phage	45.7	1.5e-19
WP_071917801.1|610227_611127_-|head	Mu-like prophage major head subunit gpT family protein	head	M4MB71	Vibrio_phage	82.1	3.0e-147
WP_071917802.1|611129_612086_-	peptidase	NA	M1Q578	Vibrio_phage	59.5	2.1e-98
WP_071917803.1|612418_612703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071917804.1|612702_613338_-	hypothetical protein	NA	A0A1V0E8A2	Vibrio_phage	47.3	3.0e-40
WP_071917805.1|613334_613847_-	hypothetical protein	NA	A0A0F6N5P8	Escherichia_phage	47.5	1.4e-32
WP_000246042.1|613843_614092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001125594.1|614103_614877_-	hypothetical protein	NA	M1PVV7	Vibrio_phage	76.3	1.8e-116
WP_071917806.1|614869_616429_-	DUF935 domain-containing protein	NA	M4M9P3	Vibrio_phage	75.9	6.0e-228
WP_071917807.1|616425_617991_-	hypothetical protein	NA	M4MHG0	Vibrio_phage	78.2	4.5e-231
WP_000492645.1|617994_618189_-	hypothetical protein	NA	M4MB75	Vibrio_phage	68.4	1.9e-14
WP_071917808.1|618189_618771_-	DUF3486 family protein	NA	M4MCR3	Vibrio_phage	70.5	2.7e-64
WP_000008606.1|618782_619073_-	hypothetical protein	NA	A0A2I7S9D8	Vibrio_phage	82.3	3.9e-40
WP_000230647.1|619081_619384_-	DUF2730 family protein	NA	M4M9P7	Vibrio_phage	51.5	3.6e-20
WP_001281318.1|619383_619614_-	TraR/DksA C4-type zinc finger protein	NA	M4MHG5	Vibrio_phage	63.2	1.1e-18
WP_001120999.1|619610_620210_-	hypothetical protein	NA	M1NVP4	Vibrio_phage	57.3	4.5e-46
WP_071917809.1|620472_621039_-	N-acetylmuramidase	NA	A0A2I7S9B9	Vibrio_phage	68.3	8.2e-66
WP_001029055.1|621123_621540_-	hypothetical protein	NA	M4MHG9	Vibrio_phage	50.0	6.3e-31
WP_000837431.1|621618_622065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000040559.1|622054_622600_-	regulatory protein GemA	NA	A0A2I7S9B8	Vibrio_phage	58.8	1.8e-54
WP_071917822.1|622612_622891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000466683.1|623094_623328_-	hypothetical protein	NA	M4M9N5	Vibrio_phage	67.5	8.3e-25
WP_071917810.1|623408_623618_-	SEC-C domain-containing protein	NA	A0A2I7S9A6	Vibrio_phage	56.2	1.6e-14
WP_071917811.1|623621_624158_-	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	42.9	2.2e-28
WP_071917812.1|624154_624625_-	hypothetical protein	NA	M4MHH2	Vibrio_phage	61.5	8.6e-45
WP_000414665.1|624621_624819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000551393.1|624802_625045_-	hypothetical protein	NA	M4MCS5	Vibrio_phage	62.0	4.2e-19
WP_000512064.1|625037_625310_-	hypothetical protein	NA	A0A2I7S9G2	Vibrio_phage	61.2	2.9e-21
WP_071917813.1|625319_625928_-	DUF3164 family protein	NA	M4MHH7	Vibrio_phage	79.6	1.5e-86
WP_071917814.1|625920_626193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046126512.1|626179_626377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071917815.1|626342_626717_-	hypothetical protein	NA	M4MB90	Vibrio_phage	59.6	2.7e-25
WP_071917816.1|626726_627143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070381230.1|627152_627377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000800334.1|627384_628329_-	AAA family ATPase	NA	M4M9P4	Vibrio_phage	73.7	1.1e-126
WP_071917817.1|628355_630359_-|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A2I7S9A8	Vibrio_phage	69.6	8.5e-275
WP_000373567.1|630370_630595_-	helix-turn-helix domain-containing protein	NA	M1PVU4	Vibrio_phage	61.9	2.3e-16
WP_071917818.1|630747_631485_+	transcriptional regulator	NA	A0A2I7S9A5	Vibrio_phage	59.9	4.0e-81
>prophage 2
NZ_CP013313	Vibrio cholerae strain E9120 chromosome 1, complete sequence	2961701	846432	853625	2961701		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|846432_847647_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|847683_848067_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|848127_848451_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|848499_849015_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196560.1|849038_850889_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001124187.1|850902_851241_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|851289_851484_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|851703_852993_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|853196_853625_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 3
NZ_CP013313	Vibrio cholerae strain E9120 chromosome 1, complete sequence	2961701	1550703	1578495	2961701	coat	Vibrio_phage(61.54%)	17	NA	NA
WP_149591715.1|1550703_1552809_-	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
WP_001906284.1|1553235_1553583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001881196.1|1553608_1554070_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_000517826.1|1554093_1567731_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_000593522.1|1568188_1568563_-	cholera enterotoxin binding subunit CtxB	NA	Q77DH7	Vibrio_virus	100.0	7.8e-65
WP_001881225.1|1568559_1569336_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000021616.1|1569434_1570634_-	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_000979342.1|1570630_1570924_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_001268534.1|1570920_1572108_-|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000493022.1|1572214_1572463_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001911548.1|1572598_1572958_-	hypothetical protein	NA	A0A0N9HE73	Vibrio_phage	100.0	4.4e-65
WP_000693566.1|1574165_1574504_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000170634.1|1574993_1575578_-	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_001161489.1|1575570_1575738_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1575815_1576508_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000512956.1|1576637_1576907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1576926_1578495_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
>prophage 4
NZ_CP013313	Vibrio cholerae strain E9120 chromosome 1, complete sequence	2961701	2423327	2429944	2961701		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2423327_2423798_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|2424062_2425172_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|2425212_2425866_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2425870_2426974_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2426999_2427449_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_000366574.1|2427548_2428799_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2428810_2429944_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
