The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013315	Vibrio cholerae strain M2140 chromosome 1, complete sequence	2939488	680694	687311	2939488		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|680694_681828_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_000366574.1|681839_683090_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|683189_683639_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001131994.1|683664_684768_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000493874.1|684772_685426_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|685466_686576_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|686840_687311_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_CP013315	Vibrio cholerae strain M2140 chromosome 1, complete sequence	2939488	1538507	1546517	2939488	coat	Vibrio_phage(77.78%)	11	NA	NA
WP_071919860.1|1538507_1540076_+	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	3.5e-58
WP_000512956.1|1540095_1540365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001052672.1|1540494_1541187_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1541264_1541432_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000170634.1|1541424_1542009_+	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_000492997.1|1542641_1542977_-	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_000743997.1|1543108_1544188_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_001911548.1|1544189_1544549_+	hypothetical protein	NA	A0A0N9HE73	Vibrio_phage	100.0	4.4e-65
WP_000493022.1|1544684_1544933_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001268535.1|1545039_1546227_+|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	99.7	4.1e-200
WP_000979342.1|1546223_1546517_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
>prophage 3
NZ_CP013315	Vibrio cholerae strain M2140 chromosome 1, complete sequence	2939488	1550177	1573514	2939488	coat	Vibrio_phage(50.0%)	12	NA	NA
WP_000743997.1|1550177_1551257_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_001911548.1|1551258_1551618_+	hypothetical protein	NA	A0A0N9HE73	Vibrio_phage	100.0	4.4e-65
WP_000493022.1|1551753_1552002_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001268535.1|1552108_1553296_+|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	99.7	4.1e-200
WP_000979342.1|1553292_1553586_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_000021612.1|1553582_1554782_+	zonula occludens toxin ZOT	NA	C9EH18	Vibrio_virus	99.5	1.0e-238
WP_001911232.1|1554881_1555658_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	98.8	1.9e-150
WP_000593520.1|1555654_1556029_+	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	99.2	3.0e-64
WP_000517824.1|1556486_1570124_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_001881196.1|1570147_1570609_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_001906284.1|1570634_1570982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149591715.1|1571408_1573514_+	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
>prophage 4
NZ_CP013315	Vibrio cholerae strain M2140 chromosome 1, complete sequence	2939488	2311907	2319100	2939488		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2311907_2312336_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107237.1|2312539_2313829_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_000872176.1|2314048_2314243_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2314291_2314630_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196560.1|2314643_2316494_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001105747.1|2316517_2317033_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2317081_2317405_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2317465_2317849_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775253.1|2317885_2319100_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 5
NZ_CP013315	Vibrio cholerae strain M2140 chromosome 1, complete sequence	2939488	2550729	2557935	2939488		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279365.1|2550729_2551617_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_001894770.1|2551884_2554473_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_071919864.1|2554565_2555555_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.1	1.0e-34
WP_000177568.1|2555628_2556564_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2556563_2557190_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000698379.1|2557182_2557935_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
