The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013311	Vibrio cholerae strain E1320 chromosome, complete genome	2951445	575274	582498	2951445		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_000698379.1|575274_576027_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
WP_000002982.1|576019_576646_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000177568.1|576645_577581_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000116737.1|577654_578662_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001894770.1|578754_581343_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_001279365.1|581610_582498_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 2
NZ_CP013311	Vibrio cholerae strain E1320 chromosome, complete genome	2951445	814127	821320	2951445		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|814127_815342_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|815378_815762_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|815822_816146_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|816194_816710_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196560.1|816733_818584_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001124187.1|818597_818936_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|818984_819179_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|819398_820688_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|820891_821320_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 3
NZ_CP013311	Vibrio cholerae strain E1320 chromosome, complete genome	2951445	2430515	2437132	2951445		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2430515_2430986_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|2431250_2432360_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|2432400_2433054_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2433058_2434162_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2434187_2434637_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_000366574.1|2434736_2435987_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2435998_2437132_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
>prophage 1
NZ_CP013312	Vibrio cholerae strain E1320 chromosome 2	1158995	560173	630706	1158995	integrase,capsid,head,tail,portal,transposase,terminase,plate,protease	Vibrio_phage(81.48%)	72	554249:554264	567867:567882
554249:554264	attL	TCACTTTGTTCATCTC	NA	NA	NA	NA
WP_000779169.1|560173_561016_-	potassium channel family protein	NA	A0A1B0Y2S3	Lactobacillus_phage	44.0	7.5e-07
WP_000251270.1|561081_561630_-	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_001217709.1|562287_563331_+	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	53.6	1.8e-98
WP_000116330.1|563463_564495_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S6L016	Salmonella_phage	52.9	1.1e-97
WP_000985033.1|564494_564908_-	hypothetical protein	NA	U3PDE6	Vibrio_phage	100.0	8.9e-70
WP_000132153.1|564907_565813_-	NAD-dependent DNA ligase	NA	U3PB51	Vibrio_phage	100.0	1.3e-161
WP_011929346.1|565838_566486_-	phage repressor protein CI	NA	A0A166YHA0	Vibrio_phage	77.0	8.7e-88
WP_000959026.1|566634_566847_+	hypothetical protein	NA	U3PFJ1	Vibrio_phage	100.0	6.4e-32
WP_000253094.1|566957_567497_+	phage regulatory CII family protein	NA	U3PIJ8	Vibrio_phage	98.9	1.0e-94
WP_001272765.1|567509_567944_+	hypothetical protein	NA	U3PDF0	Vibrio_phage	100.0	2.8e-74
567867:567882	attR	GAGATGAACAAAGTGA	NA	NA	NA	NA
WP_001031153.1|568025_568559_+	hypothetical protein	NA	U3PB56	Vibrio_phage	98.3	1.6e-84
WP_000997543.1|568555_568966_+	hypothetical protein	NA	U3PCE8	Vibrio_phage	93.4	1.0e-70
WP_001198814.1|569215_569443_+	hypothetical protein	NA	U3PIK2	Vibrio_phage	100.0	3.2e-37
WP_000099608.1|569439_570057_+	DNA methyltransferase	NA	U3PDF3	Vibrio_phage	100.0	1.2e-118
WP_000629095.1|570053_570164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000613059.1|570160_570745_+	hypothetical protein	NA	U3PB60	Vibrio_phage	97.4	1.1e-102
WP_001094898.1|570741_573303_+	replication endonuclease	NA	A0A166YHE2	Vibrio_phage	95.5	0.0e+00
WP_000756239.1|573312_573849_+	DUF262 domain-containing protein	NA	U3PFK3	Vibrio_phage	100.0	4.1e-99
WP_001140410.1|573922_574261_-	helix-turn-helix transcriptional regulator	NA	Q8HA49	Vibrio_phage	100.0	2.1e-53
WP_001292394.1|574498_574744_+	hypothetical protein	NA	U3PDF9	Vibrio_phage	98.8	4.5e-37
WP_001263191.1|574744_574996_-	ogr/Delta-like zinc finger family protein	NA	U3PB63	Vibrio_phage	100.0	1.9e-43
WP_071919583.1|575066_575552_-	type II toxin-antitoxin system YhaV family toxin	NA	Q8HA46	Vibrio_phage	98.8	2.0e-89
WP_000521064.1|575555_575750_-	hypothetical protein	NA	Q8HA45	Vibrio_phage	100.0	5.1e-28
WP_000204987.1|576205_576883_+	Bro-N domain-containing protein	NA	Q8HA44	Vibrio_phage	100.0	1.8e-128
WP_053032059.1|576879_577902_-|portal	phage portal protein	portal	U3PFK6	Vibrio_phage	92.0	4.9e-186
WP_000331804.1|577898_579716_-|terminase	terminase ATPase subunit family protein	terminase	U3PIL1	Vibrio_phage	99.2	0.0e+00
WP_001127096.1|579889_580789_+|capsid	GPO family capsid scaffolding protein	capsid	A0A160DHM4	Vibrio_phage	99.7	1.2e-122
WP_000078357.1|580825_581848_+|capsid	phage major capsid protein, P2 family	capsid	A0A160DHH1	Vibrio_phage	96.4	1.7e-186
WP_000059162.1|581851_582568_+|terminase	terminase endonuclease subunit	terminase	U3PCG2	Vibrio_phage	93.3	1.3e-124
WP_000494022.1|582674_583136_+|head	head completion/stabilization protein	head	U3PFL1	Vibrio_phage	99.3	5.8e-78
WP_000107425.1|583132_583615_+|tail	phage tail protein	tail	U3PIL4	Vibrio_phage	63.2	4.4e-52
WP_000628619.1|583611_584268_+	hypothetical protein	NA	R9TPZ7	Vibrio_phage	33.3	9.6e-18
WP_000312536.1|584269_585379_+	DUF2586 family protein	NA	U3PB71	Vibrio_phage	98.4	1.0e-205
WP_000063627.1|585378_585837_+	DUF2597 family protein	NA	U3PCG7	Vibrio_phage	100.0	1.3e-82
WP_000382491.1|585851_586061_+	TraR/DksA family transcriptional regulator	NA	U3PFL5	Vibrio_phage	100.0	2.0e-33
WP_001077689.1|586057_586285_+	hypothetical protein	NA	U3PIL8	Vibrio_phage	100.0	2.1e-36
WP_000705018.1|586271_586859_+	lysozyme	NA	U3PDH1	Vibrio_phage	67.7	8.2e-77
WP_001113534.1|586833_587175_+	hypothetical protein	NA	U3PB75	Vibrio_phage	95.6	3.2e-49
WP_002034229.1|587224_587386_+	hypothetical protein	NA	A0A166YHN7	Vibrio_phage	96.2	1.4e-23
WP_000165783.1|587382_587664_+	hypothetical protein	NA	A0A160DHS7	Vibrio_phage	76.3	5.3e-34
WP_000343646.1|587860_589678_+|tail	phage tail tape measure protein	tail	U3PFL8	Vibrio_phage	75.9	1.5e-249
WP_001113003.1|589667_590000_+	DUF2590 family protein	NA	U3PIM1	Vibrio_phage	100.0	1.7e-55
WP_000044511.1|589996_591196_+|plate	baseplate J/gp47 family protein	plate	U3PDH5	Vibrio_phage	99.2	1.9e-221
WP_000005872.1|591192_591852_+	hypothetical protein	NA	U3PB79	Vibrio_phage	99.5	3.1e-125
WP_000083762.1|591848_593687_+|tail	phage tail protein	tail	Q8HA52	Vibrio_phage	100.0	0.0e+00
WP_000369862.1|593686_594211_+	hypothetical protein	NA	Q8HA51	Vibrio_phage	100.0	9.1e-96
WP_000267790.1|594213_595107_+	hypothetical protein	NA	U3PIM3	Vibrio_phage	97.0	6.0e-156
WP_000457680.1|595094_595568_+	hypothetical protein	NA	U3PDI0	Vibrio_phage	99.4	1.1e-76
WP_000779004.1|595564_597196_+	hypothetical protein	NA	A0A160DHT6	Vibrio_phage	97.4	4.3e-309
WP_001883155.1|598537_599689_+	DNA cytosine methyltransferase	NA	A0A1P8CX13	Bacillus_phage	26.3	2.9e-25
WP_000762954.1|599812_601729_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_000606740.1|601721_602846_+	DUF3696 domain-containing protein	NA	NA	NA	NA	NA
WP_000849740.1|602842_603721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000503164.1|603788_604226_-|transposase	IS200/IS605-like element IS1004 family transposase	transposase	Q331U4	Clostridium_botulinum_C_phage	40.8	1.9e-22
WP_079993097.1|604357_604582_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_000507087.1|604730_606086_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.4	1.7e-48
WP_000967516.1|606275_607604_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_000400328.1|607854_608685_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	47.4	2.4e-58
WP_000717524.1|608787_609315_+	nicotinate-nicotinamide nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_000362857.1|609581_611123_+	DUF3369 domain-containing protein	NA	NA	NA	NA	NA
WP_000796029.1|611180_613127_-	hypothetical protein	NA	W8CYF6	Bacillus_phage	23.3	7.3e-05
WP_001267880.1|613376_614351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001046719.1|614428_616009_-	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_001276502.1|616412_617618_-	multidrug efflux MFS transporter EmrD	NA	NA	NA	NA	NA
WP_000949610.1|617870_618137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000178906.1|618127_619207_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	32.8	3.8e-19
WP_000746867.1|619327_620584_-	thermolabile hemolysin	NA	NA	NA	NA	NA
WP_001125273.1|621553_623779_+	cytolysin VCC	NA	NA	NA	NA	NA
WP_000586206.1|624077_625724_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.4	3.3e-22
WP_001033424.1|626071_627010_+	triacylglycerol lipase	NA	NA	NA	NA	NA
WP_000717572.1|627019_627874_+	lipase secretion chaperone	NA	NA	NA	NA	NA
WP_000848953.1|627949_630706_-|protease	M6 family metalloprotease PrtV	protease	NA	NA	NA	NA
>prophage 2
NZ_CP013312	Vibrio cholerae strain E1320 chromosome 2	1158995	916373	929735	1158995	coat	Vibrio_phage(55.56%)	18	NA	NA
WP_000492997.1|916373_916709_-	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_000743997.1|916840_917920_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000842207.1|917921_918278_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	9.7e-65
WP_000493022.1|918413_918662_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_071919593.1|918768_919956_+|coat	minor coat protein pIII	coat	Q8LTP3	Vibrio_virus	99.0	4.1e-192
WP_000979342.1|919952_920246_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_071919594.1|920242_921442_+	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	99.2	1.0e-238
WP_071919595.1|921541_922318_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	96.9	9.9e-147
WP_044128129.1|922314_922689_+	cholera enterotoxin binding subunit CtxB	NA	D1GID8	Vibrio_virus	97.6	4.3e-63
WP_000492997.1|923419_923755_-	helix-turn-helix transcriptional regulator	NA	A0A0N9HJE7	Vibrio_phage	100.0	4.7e-53
WP_000743997.1|923886_924966_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000842207.1|924967_925324_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	9.7e-65
WP_000493022.1|925459_925708_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_071919593.1|925814_927002_+|coat	minor coat protein pIII	coat	Q8LTP3	Vibrio_virus	99.0	4.1e-192
WP_000979342.1|926998_927292_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_071919594.1|927288_928488_+	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	99.2	1.0e-238
WP_071919595.1|928587_929364_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A023W6A1	Vibrio_virus	96.9	9.9e-147
WP_044128129.1|929360_929735_+	cholera enterotoxin binding subunit CtxB	NA	D1GID8	Vibrio_virus	97.6	4.3e-63
