assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001886815.1_ASM188681v1	NZ_CP018099	Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome	1	830993-831093	1	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	Orphan	GCCCGTAGGACGGGCTCGTCGAAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	NA|221aa|up_8|NZ_CP018099.1_820265_820928_-,NA|86aa|down_0|NZ_CP018099.1_831353_831611_-,NA|189aa|down_8|NZ_CP018099.1_840137_840704_+	NA|218aa|up_9|NZ_CP018099.1_819615_820269_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|221aa|up_8|NZ_CP018099.1_820265_820928_-	NA	NA|250aa|up_7|NZ_CP018099.1_820959_821709_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|683aa|up_6|NZ_CP018099.1_821810_823859_+	TIGR02226, hypothetical_protein-transmembrane_prediction, N-terminal double-transmembrane domain	NA|584aa|up_5|NZ_CP018099.1_823905_825657_+	pfam09818, ABC_ATPase, Predicted ATPase of the ABC class	NA|267aa|up_4|NZ_CP018099.1_825764_826565_+	cd07534, HAD_CAP, molecular class C acid phosphatases, similar to Haemophilus influenzae e (P4) acid phosphatase; belongs to the haloacid dehalogenase-like hydrolase superfamily	NA|256aa|up_3|NZ_CP018099.1_826706_827474_-	cd09085, Mth212-like_AP-endo, Methanothermobacter thermautotrophicus Mth212-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|367aa|up_2|NZ_CP018099.1_827640_828741_+	pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit	NA|279aa|up_1|NZ_CP018099.1_828742_829579_+	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|405aa|up_0|NZ_CP018099.1_829559_830774_+	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase	NA|86aa|down_0|NZ_CP018099.1_831353_831611_-	NA	NA|428aa|down_1|NZ_CP018099.1_831847_833131_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|238aa|down_2|NZ_CP018099.1_833146_833860_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|545aa|down_3|NZ_CP018099.1_833881_835516_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|637aa|down_4|NZ_CP018099.1_835525_837436_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|245aa|down_5|NZ_CP018099.1_837635_838370_-	PRK09135, PRK09135, pteridine reductase; Provisional	NA|209aa|down_6|NZ_CP018099.1_838373_839000_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|324aa|down_7|NZ_CP018099.1_839022_839994_-	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|189aa|down_8|NZ_CP018099.1_840137_840704_+	NA	NA|178aa|down_9|NZ_CP018099.1_840715_841249_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins
GCF_001886815.1_ASM188681v1	NZ_CP018099	Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome	2	2441255-2442231	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas10,csm3gr7,csx10gr5,csx19,csx1	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	Type III-C,Type III-B,Type III-D,Type III-A	GTCGGAAAGTACCCCGTTATTCAGAGGGGATTAAGAC,GTCGGAAAGTACCCCGTTATTCAGAGGGGATTAAGAC,GTCGGAAAGTACCCCGTTATTCAGAGGGGATTAAGAC	37,37,37	0	0	NA	NA	NA:NA:NA	11,12,12	12	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	NA,NA|1252aa|down_3|NZ_CP018099.1_2449207_2452963_+,NA|215aa|down_8|NZ_CP018099.1_2465550_2466195_-	NA|616aa|up_9|NZ_CP018099.1_2426297_2428145_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	cas6|240aa|up_8|NZ_CP018099.1_2429016_2429736_+	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	cas10|498aa|up_7|NZ_CP018099.1_2430048_2431542_+	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	csm3gr7|185aa|up_6|NZ_CP018099.1_2431542_2432097_+	pfam03787, RAMPs, RAMP superfamily	csx10gr5|509aa|up_5|NZ_CP018099.1_2432117_2433644_+	cd09700, Csx10, CRISPR/Cas system-associated RAMP superfamily protein Csx10	csm3gr7|447aa|up_4|NZ_CP018099.1_2433643_2434984_+	pfam03787, RAMPs, RAMP superfamily	csx19|139aa|up_3|NZ_CP018099.1_2434984_2435401_+	TIGR04423, predicted_protein, CRISPR type III-associated protein, TIGR04423 family	csm3gr7|714aa|up_2|NZ_CP018099.1_2435416_2437558_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	csx1|549aa|up_1|NZ_CP018099.1_2437633_2439280_+	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	NA|501aa|up_0|NZ_CP018099.1_2439543_2441046_+	TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal	NA|411aa|down_0|NZ_CP018099.1_2442603_2443836_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|1139aa|down_1|NZ_CP018099.1_2444093_2447510_+	pfam13809, Tubulin_2, Tubulin like	NA|564aa|down_2|NZ_CP018099.1_2447519_2449211_+	pfam03938, OmpH, Outer membrane protein (OmpH-like)	NA|1252aa|down_3|NZ_CP018099.1_2449207_2452963_+	NA	NA|690aa|down_4|NZ_CP018099.1_2452964_2455034_+	pfam13519, VWA_2, von Willebrand factor type A domain	NA|959aa|down_5|NZ_CP018099.1_2455192_2458069_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|991aa|down_6|NZ_CP018099.1_2459888_2462861_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|514aa|down_7|NZ_CP018099.1_2463770_2465312_+	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B	NA|215aa|down_8|NZ_CP018099.1_2465550_2466195_-	NA	NA|729aa|down_9|NZ_CP018099.1_2467134_2469321_-	COG3968, COG3968, Uncharacterized protein related to glutamine synthetase [General function prediction only]
GCF_001886815.1_ASM188681v1	NZ_CP018099	Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome	3	2540277-2540549	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	Orphan	TTGTCGGAAAGTACCCCGTTATTCAGAGGGGATTGAGACT,GTCTCAATCCCCTCTGAATAACGGGGTACTTTCCGAC,GTCTCAATCCCCTCTGAATAACGGGGTACTTTCCGAC	40,37,37	0	0	NA	NA	NA:NA:NA	2,3,3	3	Orphan	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	NA|357aa|up_4|NZ_CP018099.1_2534013_2535084_-,NA|95aa|up_2|NZ_CP018099.1_2536090_2536375_-,NA|174aa|up_0|NZ_CP018099.1_2537743_2538265_-,NA|134aa|down_5|NZ_CP018099.1_2550415_2550817_+	NA|411aa|up_9|NZ_CP018099.1_2525356_2526589_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|780aa|up_8|NZ_CP018099.1_2526633_2528973_+	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed	NA|329aa|up_7|NZ_CP018099.1_2529203_2530190_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|837aa|up_6|NZ_CP018099.1_2531018_2533529_+	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|155aa|up_5|NZ_CP018099.1_2533552_2534017_-	pfam03266, NTPase_1, NTPase	NA|357aa|up_4|NZ_CP018099.1_2534013_2535084_-	NA	NA|240aa|up_3|NZ_CP018099.1_2535279_2535999_-	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|95aa|up_2|NZ_CP018099.1_2536090_2536375_-	NA	NA|411aa|up_1|NZ_CP018099.1_2536481_2537714_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|174aa|up_0|NZ_CP018099.1_2537743_2538265_-	NA	NA|118aa|down_0|NZ_CP018099.1_2540573_2540927_-	TIGR02436, S23_ribosomal_protein, four helix bundle protein	NA|498aa|down_1|NZ_CP018099.1_2542314_2543808_-	pfam01940, DUF92, Integral membrane protein DUF92	NA|878aa|down_2|NZ_CP018099.1_2543825_2546459_-	PLN02563, PLN02563, aminoacyl-tRNA ligase	NA|534aa|down_3|NZ_CP018099.1_2546619_2548221_-	cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and related proteins; solute binding domain	NA|598aa|down_4|NZ_CP018099.1_2548243_2550037_-	cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16	NA|134aa|down_5|NZ_CP018099.1_2550415_2550817_+	NA	NA|404aa|down_6|NZ_CP018099.1_2551283_2552495_+	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase	NA|326aa|down_7|NZ_CP018099.1_2552507_2553485_+	COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport and metabolism]	NA|367aa|down_8|NZ_CP018099.1_2553671_2554772_+	cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of  threonine from aspartate	NA|491aa|down_9|NZ_CP018099.1_2554832_2556305_+	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]
GCF_001886815.1_ASM188681v1	NZ_CP018099	Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome	4	2541318-2541985	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	Orphan	GTCGGAAAGTACCCCGTTATTCAGAGGGGATTGAGAC,GTCTCAATCCCCTCTGAATAACGGGGTACTTTCCGAC,GTCTCAATCCCCTCTGAATAACGGGGTACTTTCCGAC	37,37,37	0	0	NA	NA	NA:NA:NA	8,8,8	8	Orphan	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	NA|357aa|up_5|NZ_CP018099.1_2534013_2535084_-,NA|95aa|up_3|NZ_CP018099.1_2536090_2536375_-,NA|174aa|up_1|NZ_CP018099.1_2537743_2538265_-,NA|134aa|down_4|NZ_CP018099.1_2550415_2550817_+	NA|780aa|up_9|NZ_CP018099.1_2526633_2528973_+	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed	NA|329aa|up_8|NZ_CP018099.1_2529203_2530190_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|837aa|up_7|NZ_CP018099.1_2531018_2533529_+	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|155aa|up_6|NZ_CP018099.1_2533552_2534017_-	pfam03266, NTPase_1, NTPase	NA|357aa|up_5|NZ_CP018099.1_2534013_2535084_-	NA	NA|240aa|up_4|NZ_CP018099.1_2535279_2535999_-	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|95aa|up_3|NZ_CP018099.1_2536090_2536375_-	NA	NA|411aa|up_2|NZ_CP018099.1_2536481_2537714_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|174aa|up_1|NZ_CP018099.1_2537743_2538265_-	NA	NA|118aa|up_0|NZ_CP018099.1_2540573_2540927_-	TIGR02436, S23_ribosomal_protein, four helix bundle protein	NA|498aa|down_0|NZ_CP018099.1_2542314_2543808_-	pfam01940, DUF92, Integral membrane protein DUF92	NA|878aa|down_1|NZ_CP018099.1_2543825_2546459_-	PLN02563, PLN02563, aminoacyl-tRNA ligase	NA|534aa|down_2|NZ_CP018099.1_2546619_2548221_-	cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and related proteins; solute binding domain	NA|598aa|down_3|NZ_CP018099.1_2548243_2550037_-	cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16	NA|134aa|down_4|NZ_CP018099.1_2550415_2550817_+	NA	NA|404aa|down_5|NZ_CP018099.1_2551283_2552495_+	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase	NA|326aa|down_6|NZ_CP018099.1_2552507_2553485_+	COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport and metabolism]	NA|367aa|down_7|NZ_CP018099.1_2553671_2554772_+	cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of  threonine from aspartate	NA|491aa|down_8|NZ_CP018099.1_2554832_2556305_+	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]	NA|486aa|down_9|NZ_CP018099.1_2557646_2559104_+	cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology)
GCF_001886815.1_ASM188681v1	NZ_CP018099	Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome	5	2756469-2756564	5	CRISPRCasFinder	no		DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	Orphan	GACTTTTGGGACAGCCCCGGGGAA	24	1	7	2756493-2756540|2756493-2756540|2756493-2756540|2756493-2756540|2756493-2756540|2756493-2756540|2756493-2756540	NZ_CP018099.1_2414835-2414788|NZ_CP018099.1_1712051-1712098|NZ_CP018099.1_2889323-2889370|NZ_CP018099.1_3446437-3446484|NZ_CP018099.1_182826-182779|NZ_CP018099.1_433116-433069|NZ_CP018099.1_3132285-3132238	NA	1	1	Orphan	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	NA|106aa|up_6|NZ_CP018099.1_2749337_2749655_-,NA|52aa|up_2|NZ_CP018099.1_2752393_2752549_-,NA	NA|228aa|up_9|NZ_CP018099.1_2745356_2746040_-	TIGR02125, CytB-hydogenase, Ni/Fe-hydrogenase, b-type cytochrome subunit	NA|573aa|up_8|NZ_CP018099.1_2746052_2747771_-	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase	NA|371aa|up_7|NZ_CP018099.1_2747770_2748883_-	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion]	NA|106aa|up_6|NZ_CP018099.1_2749337_2749655_-	NA	NA|461aa|up_5|NZ_CP018099.1_2749670_2751053_-	TIGR04315, cytochrome_c_family_protein, octaheme c-type cytochrome, tetrathionate reductase family	NA|110aa|up_4|NZ_CP018099.1_2751481_2751811_-	smart00073, HPT, Histidine Phosphotransfer domain	NA|143aa|up_3|NZ_CP018099.1_2751944_2752373_-	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|52aa|up_2|NZ_CP018099.1_2752393_2752549_-	NA	NA|529aa|up_1|NZ_CP018099.1_2752806_2754393_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|587aa|up_0|NZ_CP018099.1_2754692_2756453_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|529aa|down_0|NZ_CP018099.1_2756761_2758348_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|360aa|down_1|NZ_CP018099.1_2758638_2759718_-	PRK03011, PRK03011, butyrate kinase; Provisional	NA|301aa|down_2|NZ_CP018099.1_2759732_2760635_-	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|336aa|down_3|NZ_CP018099.1_2760650_2761658_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|749aa|down_4|NZ_CP018099.1_2761743_2763990_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|452aa|down_5|NZ_CP018099.1_2764010_2765366_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|574aa|down_6|NZ_CP018099.1_2765355_2767077_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|418aa|down_7|NZ_CP018099.1_2768560_2769814_+	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters	NA|679aa|down_8|NZ_CP018099.1_2769867_2771904_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|182aa|down_9|NZ_CP018099.1_2771975_2772521_-	pfam13435, Cytochrome_C554, Cytochrome c554 and c-prime
GCF_001886815.1_ASM188681v1	NZ_CP018099	Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome	6	3373049-3375860	4,6,4,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	Type III-C,Type III-B,Type III-D,Type III-A	GTCTTAATCCCTTCAAGCAGGTCATTCCTTTTCTAC,GTCTTAATCCCTTCAAGCAGGTCATTCCTTTTCTAC,GTCTTAATCCCTTCAAGCAGGTCATTCCTTTTCTAC,GTCTTAATCCCTTCAAGCAGGTCATTCCTTTTCTAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	34,36,36,34	36	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	NA|591aa|up_9|NZ_CP018099.1_3356295_3358068_-,NA|484aa|up_7|NZ_CP018099.1_3360885_3362337_-,NA|146aa|up_3|NZ_CP018099.1_3367895_3368333_+,NA|185aa|up_1|NZ_CP018099.1_3370207_3370762_-,NA	NA|591aa|up_9|NZ_CP018099.1_3356295_3358068_-	NA	NA|927aa|up_8|NZ_CP018099.1_3358083_3360864_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|484aa|up_7|NZ_CP018099.1_3360885_3362337_-	NA	NA|198aa|up_6|NZ_CP018099.1_3362351_3362945_-	pfam14321, DUF4382, Domain of unknown function (DUF4382)	NA|908aa|up_5|NZ_CP018099.1_3363171_3365895_-	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily	NA|337aa|up_4|NZ_CP018099.1_3366035_3367046_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|146aa|up_3|NZ_CP018099.1_3367895_3368333_+	NA	NA|584aa|up_2|NZ_CP018099.1_3368349_3370101_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|185aa|up_1|NZ_CP018099.1_3370207_3370762_-	NA	NA|529aa|up_0|NZ_CP018099.1_3371129_3372716_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	cas2|94aa|down_0|NZ_CP018099.1_3376125_3376407_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas2|92aa|down_1|NZ_CP018099.1_3376403_3376679_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|361aa|down_2|NZ_CP018099.1_3376675_3377758_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csm5gr7|385aa|down_3|NZ_CP018099.1_3377789_3378944_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|340aa|down_4|NZ_CP018099.1_3378940_3379960_-	TIGR01903, Hypothetical_protein	csm3gr7|242aa|down_5|NZ_CP018099.1_3379963_3380689_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|129aa|down_6|NZ_CP018099.1_3380732_3381119_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|838aa|down_7|NZ_CP018099.1_3381135_3383649_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|309aa|down_8|NZ_CP018099.1_3383641_3384568_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|215aa|down_9|NZ_CP018099.1_3385124_3385769_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase
GCF_001886815.1_ASM188681v1	NZ_CP018099	Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome	7	3698793-3699075	6	PILER-CR	no		DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	Orphan	ACAATACTTTTTTATTTTCGAGACCGACCCGTTTCCGCAGGATCCCTACGGGACAACC	58	1	1	3698851-3698904	NZ_CP018099.1_3699532-3699585	NA	2	2	Orphan	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	NA,NA	NA|339aa|up_9|NZ_CP018099.1_3686623_3687640_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|577aa|up_8|NZ_CP018099.1_3687742_3689473_+	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|581aa|up_7|NZ_CP018099.1_3689472_3691215_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|511aa|up_6|NZ_CP018099.1_3691180_3692713_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|239aa|up_5|NZ_CP018099.1_3692709_3693426_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|166aa|up_4|NZ_CP018099.1_3693554_3694052_-	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|789aa|up_3|NZ_CP018099.1_3694072_3696439_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|375aa|up_2|NZ_CP018099.1_3696603_3697728_-	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|118aa|up_1|NZ_CP018099.1_3697876_3698230_+	cd02222, cupin_TM1459-like, Thermotoga maritima TM1459 and related proteins, cupin domain	NA|81aa|up_0|NZ_CP018099.1_3698419_3698662_-	cd10449, GIY-YIG_SLX1_like, Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its homologs	NA|280aa|down_0|NZ_CP018099.1_3699979_3700819_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|463aa|down_1|NZ_CP018099.1_3700842_3702231_+	cd01087, Prolidase, Prolidase	NA|138aa|down_2|NZ_CP018099.1_3702633_3703047_-	pfam04238, DUF420, Protein of unknown function (DUF420)	NA|197aa|down_3|NZ_CP018099.1_3703043_3703634_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|309aa|down_4|NZ_CP018099.1_3703630_3704557_-	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein	NA|134aa|down_5|NZ_CP018099.1_3704842_3705244_-	TIGR02229, hypothetical_protein, caa(3)-type oxidase, subunit IV	NA|217aa|down_6|NZ_CP018099.1_3705250_3705901_-	cd02862, NorE_like, NorE_like subfamily of heme-copper oxidase subunit III	NA|549aa|down_7|NZ_CP018099.1_3705932_3707579_-	TIGR02891, Probable_cytochrome_c_oxidase_subunit_1-beta, cytochrome c oxidase, subunit I	NA|317aa|down_8|NZ_CP018099.1_3707585_3708536_-	TIGR02866, Heme-copper_oxidase_subunit_2, cytochrome c oxidase, subunit II	NA|274aa|down_9|NZ_CP018099.1_3708532_3709354_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold
GCF_001886815.1_ASM188681v1	NZ_CP018099	Caldithrix abyssi DSM 13497 strain LF13 chromosome, complete genome	8	4498966-4500979	7,5,7	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	Type I-B	GTTTCAATCCCACTCTGATTCGATTAAAAC,GTTTCAATCCCACTCTGATTCGATTAAAAC,GTTTCAATCCCACTCTGATTCGATTAAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	30,30,29	30	TypeI-B	DEDDh,DinG,csa3,cas4,PD-DExK,cas6,cas10,csm3gr7,csx10gr5,csx19,csx1,cas3,Cas9_archaeal,cas2,cas1,csm5gr7,csm4gr5,csm2gr11,cas5,cas7b,cas8b1	NA,cas8b1|608aa|down_6|NZ_CP018099.1_4507432_4509256_-	NA|146aa|up_9|NZ_CP018099.1_4483843_4484281_+	pfam01641, SelR, SelR domain	NA|632aa|up_8|NZ_CP018099.1_4484594_4486490_+	cd09604, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain	NA|173aa|up_7|NZ_CP018099.1_4486645_4487164_+	cd01055, Nonheme_Ferritin, nonheme-containing ferritins	NA|317aa|up_6|NZ_CP018099.1_4487284_4488235_-	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|331aa|up_5|NZ_CP018099.1_4488227_4489220_-	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|221aa|up_4|NZ_CP018099.1_4489355_4490018_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|739aa|up_3|NZ_CP018099.1_4490020_4492237_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|476aa|up_2|NZ_CP018099.1_4493059_4494487_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|443aa|up_1|NZ_CP018099.1_4494509_4495838_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|891aa|up_0|NZ_CP018099.1_4495875_4498548_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	cas2|88aa|down_0|NZ_CP018099.1_4501102_4501366_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|335aa|down_1|NZ_CP018099.1_4501386_4502391_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|170aa|down_2|NZ_CP018099.1_4502433_4502943_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|906aa|down_3|NZ_CP018099.1_4502958_4505676_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|264aa|down_4|NZ_CP018099.1_4505656_4506448_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7b|316aa|down_5|NZ_CP018099.1_4506450_4507398_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|608aa|down_6|NZ_CP018099.1_4507432_4509256_-	NA	cas6|266aa|down_7|NZ_CP018099.1_4509279_4510077_-	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|213aa|down_8|NZ_CP018099.1_4510351_4510990_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|437aa|down_9|NZ_CP018099.1_4510986_4512297_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
