assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001886675.1_ASM188667v1	NZ_CP018102	Enterococcus faecalis strain L12, complete genome	1	420957-421135	1	PILER-CR	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Orphan	CCAAGTAAACCAACAGAACCTGAAAAACCAGTAACACCAACAGAACC	47	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA|32aa|up_9|NZ_CP018102.1_409602_409698_+,NA|129aa|up_2|NZ_CP018102.1_418968_419355_+,NA|87aa|up_1|NZ_CP018102.1_419500_419761_+,NA|206aa|down_1|NZ_CP018102.1_422829_423447_+,NA|105aa|down_3|NZ_CP018102.1_423846_424161_+,NA|92aa|down_5|NZ_CP018102.1_425177_425453_+,NA|161aa|down_7|NZ_CP018102.1_425873_426356_+	NA|32aa|up_9|NZ_CP018102.1_409602_409698_+	NA	NA|390aa|up_8|NZ_CP018102.1_409687_410857_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|77aa|up_7|NZ_CP018102.1_410900_411131_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|82aa|up_6|NZ_CP018102.1_411986_412232_-	pfam12645, HTH_16, Helix-turn-helix domain	NA|134aa|up_5|NZ_CP018102.1_412225_412627_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|1306aa|up_4|NZ_CP018102.1_414611_418529_+	pfam08363, GbpC, Glucan-binding protein C	NA|119aa|up_3|NZ_CP018102.1_418590_418947_+	pfam09627, PrgU, PrgU-like protein	NA|129aa|up_2|NZ_CP018102.1_418968_419355_+	NA	NA|87aa|up_1|NZ_CP018102.1_419500_419761_+	NA	NA|293aa|up_0|NZ_CP018102.1_419771_420650_+	cd16427, TraM-like, C-terminal domain of transfer protein TraM	NA|424aa|down_0|NZ_CP018102.1_421555_422827_+	PRK08581, PRK08581, amidase domain-containing protein	NA|206aa|down_1|NZ_CP018102.1_422829_423447_+	NA	NA|123aa|down_2|NZ_CP018102.1_423478_423847_+	cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus	NA|105aa|down_3|NZ_CP018102.1_423846_424161_+	NA	NA|345aa|down_4|NZ_CP018102.1_424153_425188_+	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|92aa|down_5|NZ_CP018102.1_425177_425453_+	NA	NA|131aa|down_6|NZ_CP018102.1_425449_425842_+	pfam12648, TcpE, TcpE family	NA|161aa|down_7|NZ_CP018102.1_425873_426356_+	NA	NA|153aa|down_8|NZ_CP018102.1_426450_426909_+	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|831aa|down_9|NZ_CP018102.1_427013_429506_+	pfam12846, AAA_10, AAA-like domain
GCF_001886675.1_ASM188667v1	NZ_CP018102	Enterococcus faecalis strain L12, complete genome	2	489163-489794	2,1,1,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Type II-A,Type II-B,Type II-C	GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC,GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	36,36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	7,9,9,7	9	TypeII-A,TypeII-B,TypeII-C	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA|78aa|up_4|NZ_CP018102.1_482496_482730_+,NA	NA|191aa|up_9|NZ_CP018102.1_475942_476515_+	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|509aa|up_8|NZ_CP018102.1_476581_478108_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|550aa|up_7|NZ_CP018102.1_478311_479961_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|258aa|up_6|NZ_CP018102.1_480030_480804_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|472aa|up_5|NZ_CP018102.1_480937_482353_+	TIGR01886, Beta-Ala-Xaa_dipeptidase, dipeptidase PepV	NA|78aa|up_4|NZ_CP018102.1_482496_482730_+	NA	cas9|1338aa|up_3|NZ_CP018102.1_483202_487216_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|NZ_CP018102.1_487216_488083_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_1|NZ_CP018102.1_488079_488409_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|220aa|up_0|NZ_CP018102.1_488409_489069_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|338aa|down_0|NZ_CP018102.1_490574_491588_-	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|318aa|down_1|NZ_CP018102.1_491823_492777_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|506aa|down_2|NZ_CP018102.1_492777_494295_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|152aa|down_3|NZ_CP018102.1_494436_494892_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|507aa|down_4|NZ_CP018102.1_494925_496446_+	PLN02371, PLN02371, phosphoglucosamine mutase family protein	NA|185aa|down_5|NZ_CP018102.1_496456_497011_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|284aa|down_6|NZ_CP018102.1_497134_497986_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|729aa|down_7|NZ_CP018102.1_498339_500526_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|114aa|down_8|NZ_CP018102.1_500588_500930_+	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|412aa|down_9|NZ_CP018102.1_501085_502321_+	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain
GCF_001886675.1_ASM188667v1	NZ_CP018102	Enterococcus faecalis strain L12, complete genome	3	1923119-1923232	2	CRISPRCasFinder	no	csa3	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Type I-A	ACAACGTTCCCTTTGGTCACCTTGTACTGTTC	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA,NA|28aa|down_0|NZ_CP018102.1_1923318_1923402_-	NA|241aa|up_9|NZ_CP018102.1_1913989_1914712_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|294aa|up_8|NZ_CP018102.1_1914972_1915854_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|262aa|up_7|NZ_CP018102.1_1915959_1916745_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|146aa|up_6|NZ_CP018102.1_1916928_1917366_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|259aa|up_5|NZ_CP018102.1_1917385_1918162_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|92aa|up_4|NZ_CP018102.1_1918268_1918544_+	COG1254, AcyP, Acylphosphatases [Energy production and conversion]	NA|311aa|up_3|NZ_CP018102.1_1918710_1919643_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|64aa|up_2|NZ_CP018102.1_1919676_1919868_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|695aa|up_1|NZ_CP018102.1_1919907_1921992_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|303aa|up_0|NZ_CP018102.1_1921993_1922902_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|28aa|down_0|NZ_CP018102.1_1923318_1923402_-	NA	NA|265aa|down_1|NZ_CP018102.1_1923670_1924465_-	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|301aa|down_2|NZ_CP018102.1_1924547_1925450_-	PRK00089, era, GTPase Era; Reviewed	NA|136aa|down_3|NZ_CP018102.1_1925463_1925871_-	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes	NA|160aa|down_4|NZ_CP018102.1_1925848_1926328_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|733aa|down_5|NZ_CP018102.1_1926327_1928526_-	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]	NA|325aa|down_6|NZ_CP018102.1_1928554_1929529_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|150aa|down_7|NZ_CP018102.1_1929711_1930161_-	pfam09424, YqeY, Yqey-like protein	NA|59aa|down_8|NZ_CP018102.1_1930186_1930363_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|145aa|down_9|NZ_CP018102.1_1930528_1930963_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators
GCF_001886675.1_ASM188667v1	NZ_CP018102	Enterococcus faecalis strain L12, complete genome	4	2538690-2538763	3	CRISPRCasFinder	no		WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	Orphan	ATAGTTGGCGAGCAACAGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,cas9,cas1,cas2,csn2,cas14j,DinG,DEDDh	NA|71aa|up_9|NZ_CP018102.1_2527469_2527682_-,NA	NA|71aa|up_9|NZ_CP018102.1_2527469_2527682_-	NA	NA|289aa|up_8|NZ_CP018102.1_2527806_2528673_-	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|435aa|up_7|NZ_CP018102.1_2528840_2530145_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|423aa|up_6|NZ_CP018102.1_2530137_2531406_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|150aa|up_5|NZ_CP018102.1_2531614_2532064_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|236aa|up_4|NZ_CP018102.1_2532104_2532812_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|227aa|up_3|NZ_CP018102.1_2532907_2533588_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|238aa|up_2|NZ_CP018102.1_2533983_2534697_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|915aa|up_1|NZ_CP018102.1_2534957_2537702_+	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|217aa|up_0|NZ_CP018102.1_2537716_2538367_+	TIGR01990, bPGM, beta-phosphoglucomutase	NA|324aa|down_0|NZ_CP018102.1_2540168_2541140_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|146aa|down_1|NZ_CP018102.1_2541314_2541752_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|185aa|down_2|NZ_CP018102.1_2541884_2542439_-	cd00555, Maf, Nucleotide binding protein Maf	NA|711aa|down_3|NZ_CP018102.1_2542463_2544596_-	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	NA|859aa|down_4|NZ_CP018102.1_2544627_2547204_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|124aa|down_5|NZ_CP018102.1_2547204_2547576_-	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|266aa|down_6|NZ_CP018102.1_2547663_2548461_-	pfam13277, YmdB, YmdB-like protein	NA|519aa|down_7|NZ_CP018102.1_2548620_2550177_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|349aa|down_8|NZ_CP018102.1_2550573_2551620_-	PRK09354, recA, recombinase A; Provisional	NA|415aa|down_9|NZ_CP018102.1_2551733_2552978_-	PRK00549, PRK00549, competence damage-inducible protein A; Provisional
