assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001886635.1_ASM188663v1	NZ_CP018065	Enterococcus faecium strain E1 chromosome, complete genome	1	404741-404850	1	CRISPRCasFinder	no		RT,cas3,csa3,cas14j,DinG,DEDDh,cas2	Orphan	TGATGAACAATACTGGTTGAGCAAAG	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,cas14j,DinG,DEDDh,cas2,WYL	NA,NA	NA|215aa|up_9|NZ_CP018065.1_397356_398001_-	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily	NA|51aa|up_8|NZ_CP018065.1_398162_398315_+	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|57aa|up_7|NZ_CP018065.1_398338_398509_+	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|182aa|up_6|NZ_CP018065.1_398609_399155_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|296aa|up_5|NZ_CP018065.1_399231_400119_+	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|340aa|up_4|NZ_CP018065.1_400291_401311_+	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|291aa|up_3|NZ_CP018065.1_401401_402274_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|223aa|up_2|NZ_CP018065.1_402286_402955_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|141aa|up_1|NZ_CP018065.1_403297_403720_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|230aa|up_0|NZ_CP018065.1_403823_404513_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|168aa|down_0|NZ_CP018065.1_404922_405426_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|123aa|down_1|NZ_CP018065.1_405478_405847_+	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|230aa|down_2|NZ_CP018065.1_405952_406642_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP018065.1_407866_408775_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|511aa|down_4|NZ_CP018065.1_409164_410697_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|234aa|down_5|NZ_CP018065.1_410930_411632_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|238aa|down_6|NZ_CP018065.1_411885_412599_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|380aa|down_7|NZ_CP018065.1_412907_414047_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|322aa|down_8|NZ_CP018065.1_414135_415101_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|720aa|down_9|NZ_CP018065.1_415150_417310_-	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated
GCF_001886635.1_ASM188663v1	NZ_CP018065	Enterococcus faecium strain E1 chromosome, complete genome	2	1012776-1012892	2	CRISPRCasFinder	no		RT,cas3,csa3,cas14j,DinG,DEDDh,cas2	Orphan	CAAAAAATCTGAGCCAGAATGTGGTTCATTCTGAC	35	1	15	1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857|1012811-1012857	NZ_CP018065.1_325680-325634|NZ_CP018065.1_729663-729709|NZ_CP018065.1_1179187-1179141|NZ_CP018065.1_1191063-1191017|NZ_CP018065.1_1194076-1194030|NZ_CP018065.1_1480999-1481045|NZ_CP018065.1_1543153-1543199|NZ_CP018065.1_1668822-1668868|NZ_CP018065.1_1825888-1825934|NZ_CP018065.1_1942616-1942570|NZ_CP018065.1_2080199-2080245|NZ_CP018065.1_2599151-2599105|NZ_CP018065.1_2647763-2647717|NZ_CP018065.1_2717187-2717141|NZ_CP018065.1_2723278-2723232	NA	1	1	Orphan	RT,cas3,csa3,cas14j,DinG,DEDDh,cas2,WYL	NA|101aa|up_8|NZ_CP018065.1_1003940_1004243_-,NA|242aa|up_2|NZ_CP018065.1_1008981_1009707_-,NA	NA|432aa|up_9|NZ_CP018065.1_1002454_1003750_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|101aa|up_8|NZ_CP018065.1_1003940_1004243_-	NA	NA|258aa|up_7|NZ_CP018065.1_1004999_1005773_-	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|117aa|up_6|NZ_CP018065.1_1005916_1006267_+	pfam13630, SdpI, SdpI/YfhL protein family	NA|239aa|up_5|NZ_CP018065.1_1006247_1006964_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|483aa|up_4|NZ_CP018065.1_1006963_1008412_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|170aa|up_3|NZ_CP018065.1_1008482_1008992_-	cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter	NA|242aa|up_2|NZ_CP018065.1_1008981_1009707_-	NA	NA|432aa|up_1|NZ_CP018065.1_1010039_1011335_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|432aa|up_0|NZ_CP018065.1_1011479_1012775_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|707aa|down_0|NZ_CP018065.1_1012973_1015094_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|393aa|down_1|NZ_CP018065.1_1015323_1016502_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|253aa|down_2|NZ_CP018065.1_1016517_1017276_+	PRK02412, aroD, type I 3-dehydroquinate dehydratase	NA|162aa|down_3|NZ_CP018065.1_1017298_1017784_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|418aa|down_4|NZ_CP018065.1_1017854_1019108_-	pfam03486, HI0933_like, HI0933-like protein	NA|450aa|down_5|NZ_CP018065.1_1019224_1020574_+	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase	NA|449aa|down_6|NZ_CP018065.1_1020685_1022032_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|129aa|down_7|NZ_CP018065.1_1022339_1022726_-	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|488aa|down_8|NZ_CP018065.1_1022949_1024413_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|320aa|down_9|NZ_CP018065.1_1025449_1026409_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_001886635.1_ASM188663v1	NZ_CP018066	Enterococcus faecium strain E1 plasmid pE1_230, complete sequence	1	225589-225716	1	CRISPRCasFinder	no	cas14j	cas14j,csa3,WYL	Unclear	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	TypeV	RT,cas3,csa3,cas14j,DinG,DEDDh,cas2,WYL	NA,NA|111aa|down_0|NZ_CP018066.1_227046_227379_+	NA|211aa|up_9|NZ_CP018066.1_212522_213155_-	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|908aa|up_8|NZ_CP018066.1_213167_215891_-	COG3933, COG3933, Transcriptional antiterminator [Transcription]	NA|322aa|up_7|NZ_CP018066.1_216006_216972_-	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|271aa|up_6|NZ_CP018066.1_217025_217838_-	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|258aa|up_5|NZ_CP018066.1_217851_218625_-	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|157aa|up_4|NZ_CP018066.1_218638_219109_-	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|139aa|up_3|NZ_CP018066.1_219105_219522_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|227aa|up_2|NZ_CP018066.1_220570_221251_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|106aa|up_1|NZ_CP018066.1_222297_222615_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|85aa|up_0|NZ_CP018066.1_222615_222870_-	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|111aa|down_0|NZ_CP018066.1_227046_227379_+	NA	NA|100aa|down_1|NZ_CP018066.1_227997_228297_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|135aa|down_2|NZ_CP018066.1_228382_228787_+	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|383aa|down_3|NZ_CP018066.1_228803_229952_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
