assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001886615.1_ASM188661v1	NZ_CP018139	Halomonas aestuarii strain Hb3 chromosome, complete genome	1	455406-455501	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,WYL	Orphan	CAGGCCGCCGCCGATGGCACCGGC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,WYL	NA,NA	NA|485aa|up_9|NZ_CP018139.1_443544_444999_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|485aa|up_8|NZ_CP018139.1_444998_446453_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|184aa|up_7|NZ_CP018139.1_446483_447035_+	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR	NA|57aa|up_6|NZ_CP018139.1_447041_447212_-	pfam12997, DUF3881, Domain of unknown function, E	NA|148aa|up_5|NZ_CP018139.1_447478_447922_+	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|480aa|up_4|NZ_CP018139.1_448221_449661_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|501aa|up_3|NZ_CP018139.1_449738_451241_-	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like	NA|463aa|up_2|NZ_CP018139.1_451237_452626_-	PRK07480, PRK07480, putative aminotransferase; Validated	NA|255aa|up_1|NZ_CP018139.1_452653_453418_-	pfam07722, Peptidase_C26, Peptidase C26	NA|459aa|up_0|NZ_CP018139.1_453679_455056_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|313aa|down_0|NZ_CP018139.1_455895_456834_-	cd00537, MTHFR, Methylenetetrahydrofolate reductase (MTHFR)	NA|399aa|down_1|NZ_CP018139.1_456837_458034_-	PRK12486, dmdA, dimethylsulfoniopropionate demethylase	NA|856aa|down_2|NZ_CP018139.1_458327_460895_+	COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]	NA|355aa|down_3|NZ_CP018139.1_460907_461972_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|564aa|down_4|NZ_CP018139.1_462333_464025_+	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|382aa|down_5|NZ_CP018139.1_464070_465216_-	cd14861, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|461aa|down_6|NZ_CP018139.1_465212_466595_-	cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of Synechococcus sp	NA|451aa|down_7|NZ_CP018139.1_466712_468065_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|351aa|down_8|NZ_CP018139.1_468185_469238_-	cd13683, PBP2_TRAP_DctP6_7, Substrate-binding domain of Tripartite ATP-independent Periplasmic transporter DctP6 and DctP7; type 2 periplasmic-binding protein fold	NA|441aa|down_9|NZ_CP018139.1_469320_470643_-	COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001886615.1_ASM188661v1	NZ_CP018139	Halomonas aestuarii strain Hb3 chromosome, complete genome	2	1050394-1050612	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,WYL	Orphan	TGGACGCCGCCGCCGAGGAGGCCG	24	0	0	NA	NA	NA	3	3	Orphan	DEDDh,DinG,cas3,csa3,WYL	NA|184aa|up_2|NZ_CP018139.1_1047772_1048324_+,NA	NA|257aa|up_9|NZ_CP018139.1_1041123_1041894_+	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]	NA|235aa|up_8|NZ_CP018139.1_1041922_1042627_+	COG4215, ArtQ, ABC-type arginine transport system, permease component [Amino acid transport and metabolism]	NA|244aa|up_7|NZ_CP018139.1_1042626_1043358_+	COG4160, ArtM, ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]	NA|255aa|up_6|NZ_CP018139.1_1043511_1044276_+	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|240aa|up_5|NZ_CP018139.1_1044375_1045095_-	PRK05665, PRK05665, amidotransferase; Provisional	NA|271aa|up_4|NZ_CP018139.1_1045239_1046052_+	pfam05857, TraX, TraX protein	NA|480aa|up_3|NZ_CP018139.1_1046336_1047776_+	cd09625, DOMON_like_cytochrome, DOMON-like domain of an uncharacterized protein family	NA|184aa|up_2|NZ_CP018139.1_1047772_1048324_+	NA	NA|371aa|up_1|NZ_CP018139.1_1048389_1049502_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|171aa|up_0|NZ_CP018139.1_1049515_1050028_-	pfam00731, AIRC, AIR carboxylase	NA|664aa|down_0|NZ_CP018139.1_1050778_1052770_-	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein	NA|174aa|down_1|NZ_CP018139.1_1052807_1053329_-	pfam08905, DUF1850, Domain of unknown function (DUF1850)	NA|320aa|down_2|NZ_CP018139.1_1053335_1054295_-	cd13567, PBP2_TtGluBP, Substrate binding domain of Thermus thermophilus GluBP (TtGluBP) of TAXI family of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|399aa|down_3|NZ_CP018139.1_1054458_1055655_-	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase	NA|324aa|down_4|NZ_CP018139.1_1055752_1056724_-	PRK02963, PRK02963, carbon starvation induced protein CsiD	NA|476aa|down_5|NZ_CP018139.1_1056886_1058314_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|95aa|down_6|NZ_CP018139.1_1058703_1058988_+	pfam13744, HTH_37, Helix-turn-helix domain	NA|321aa|down_7|NZ_CP018139.1_1059089_1060052_-	TIGR03438, conserved_hypothetical_protein, dimethylhistidine N-methyltransferase	NA|773aa|down_8|NZ_CP018139.1_1060209_1062528_+	TIGR03169, selenide_water_dikinase_putative, pyridine nucleotide-disulfide oxidoreductase family protein	NA|330aa|down_9|NZ_CP018139.1_1062576_1063566_-	TIGR04348, glycosyl_transferase_group_1, putative glycosyltransferase, TIGR04348 family
GCF_001886615.1_ASM188661v1	NZ_CP018139	Halomonas aestuarii strain Hb3 chromosome, complete genome	3	1641454-1641573	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,WYL	Orphan	GCCCGTGCCCGCCATGGCGCCGTGGTCCATCCCCGCCAT	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,WYL	NA,NA|101aa|down_4|NZ_CP018139.1_1646324_1646627_+,NA|51aa|down_5|NZ_CP018139.1_1646704_1646857_+	NA|529aa|up_9|NZ_CP018139.1_1628438_1630025_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|327aa|up_8|NZ_CP018139.1_1630077_1631058_-	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|481aa|up_7|NZ_CP018139.1_1631092_1632535_-	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like	NA|296aa|up_6|NZ_CP018139.1_1632629_1633517_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|178aa|up_5|NZ_CP018139.1_1633708_1634242_+	pfam06776, IalB, Invasion associated locus B (IalB) protein	NA|192aa|up_4|NZ_CP018139.1_1634356_1634932_-	PRK11469, PRK11469, manganese efflux pump MntP	NA|775aa|up_3|NZ_CP018139.1_1635226_1637551_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|455aa|up_2|NZ_CP018139.1_1637547_1638912_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|258aa|up_1|NZ_CP018139.1_1639045_1639819_-	COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]	NA|257aa|up_0|NZ_CP018139.1_1639979_1640750_-	pfam05275, CopB, Copper resistance protein B precursor (CopB)	NA|445aa|down_0|NZ_CP018139.1_1642783_1644118_-	cd16954, HATPase_PhoQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli PhoQ and Providencia stuartii AarG	NA|222aa|down_1|NZ_CP018139.1_1644098_1644764_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|163aa|down_2|NZ_CP018139.1_1644774_1645263_-	cd04211, Cupredoxin_like_2, Uncharacterized Cupredoxin-like subfamily	NA|190aa|down_3|NZ_CP018139.1_1645651_1646221_+	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins	NA|101aa|down_4|NZ_CP018139.1_1646324_1646627_+	NA	NA|51aa|down_5|NZ_CP018139.1_1646704_1646857_+	NA	NA|147aa|down_6|NZ_CP018139.1_1646853_1647294_+	COG3019, COG3019, Predicted metal-binding protein [General function prediction only]	NA|407aa|down_7|NZ_CP018139.1_1647371_1648592_-	TIGR02409, Probable_gamma-butyrobetaine_dioxygenase, gamma-butyrobetaine hydroxylase	NA|155aa|down_8|NZ_CP018139.1_1648689_1649154_-	PRK07531, PRK07531, carnitine 3-dehydrogenase	NA|319aa|down_9|NZ_CP018139.1_1649153_1650110_-	PRK07066, PRK07066, L-carnitine dehydrogenase
GCF_001886615.1_ASM188661v1	NZ_CP018139	Halomonas aestuarii strain Hb3 chromosome, complete genome	4	2362693-2362787	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,WYL	Orphan	GAAGGCGGCGAGCAGGGCCATCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,WYL	NA,NA|181aa|down_0|NZ_CP018139.1_2363662_2364205_-	NA|232aa|up_9|NZ_CP018139.1_2351915_2352611_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|404aa|up_8|NZ_CP018139.1_2352612_2353824_-	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_7|NZ_CP018139.1_2353820_2354762_-	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|648aa|up_6|NZ_CP018139.1_2354758_2356702_-	PRK07229, PRK07229, aconitate hydratase; Validated	NA|175aa|up_5|NZ_CP018139.1_2356694_2357219_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|349aa|up_4|NZ_CP018139.1_2357229_2358276_-	cd13683, PBP2_TRAP_DctP6_7, Substrate-binding domain of Tripartite ATP-independent Periplasmic transporter DctP6 and DctP7; type 2 periplasmic-binding protein fold	NA|430aa|up_3|NZ_CP018139.1_2358337_2359627_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|406aa|up_2|NZ_CP018139.1_2359640_2360858_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|246aa|up_1|NZ_CP018139.1_2360895_2361633_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|225aa|up_0|NZ_CP018139.1_2361716_2362391_-	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional	NA|181aa|down_0|NZ_CP018139.1_2363662_2364205_-	NA	NA|272aa|down_1|NZ_CP018139.1_2365137_2365953_-	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]	NA|159aa|down_2|NZ_CP018139.1_2366041_2366518_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|488aa|down_3|NZ_CP018139.1_2366514_2367978_-	PRK10859, PRK10859, membrane-bound lytic murein transglycosylase MltF	NA|1317aa|down_4|NZ_CP018139.1_2368134_2372085_+	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional	NA|71aa|down_5|NZ_CP018139.1_2372189_2372402_-	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|644aa|down_6|NZ_CP018139.1_2372499_2374431_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|322aa|down_7|NZ_CP018139.1_2374516_2375482_+	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|295aa|down_8|NZ_CP018139.1_2375478_2376363_+	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB	NA|287aa|down_9|NZ_CP018139.1_2376359_2377220_+	PRK10700, PRK10700, 23S rRNA pseudouridine(2605) synthase RluB
GCF_001886615.1_ASM188661v1	NZ_CP018139	Halomonas aestuarii strain Hb3 chromosome, complete genome	5	3485490-3485817	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,cas3,csa3,WYL	Orphan	CGGTTCATCCCCGCTCCCGCGGGGAACACT,CGGTTCATCCCCGCTCGCGCGGG,CGGTTCATCCCCGCTCNCGCGGG	30,23,23	0	0	NA	NA	I-E:I-E:NA	4,5,5	5	Orphan	DEDDh,DinG,cas3,csa3,WYL	NA|119aa|up_8|NZ_CP018139.1_3477648_3478005_+,NA|286aa|up_4|NZ_CP018139.1_3481175_3482033_+,NA|97aa|up_2|NZ_CP018139.1_3482619_3482910_-,NA|117aa|down_1|NZ_CP018139.1_3489160_3489511_+	NA|58aa|up_9|NZ_CP018139.1_3477270_3477444_-	pfam11174, DUF2970, Protein of unknown function (DUF2970)	NA|119aa|up_8|NZ_CP018139.1_3477648_3478005_+	NA	NA|244aa|up_7|NZ_CP018139.1_3478161_3478893_-	pfam04172, LrgB, LrgB-like family	NA|126aa|up_6|NZ_CP018139.1_3478889_3479267_-	pfam03788, LrgA, LrgA family	NA|261aa|up_5|NZ_CP018139.1_3480400_3481183_+	pfam00226, DnaJ, DnaJ domain	NA|286aa|up_4|NZ_CP018139.1_3481175_3482033_+	NA	NA|103aa|up_3|NZ_CP018139.1_3482307_3482616_-	TIGR03013, EpsB_2, sugar transferase, PEP-CTERM system associated	NA|97aa|up_2|NZ_CP018139.1_3482619_3482910_-	NA	NA|329aa|up_1|NZ_CP018139.1_3483128_3484115_-	pfam09935, DUF2167, Protein of unknown function (DUF2167)	NA|218aa|up_0|NZ_CP018139.1_3484725_3485379_+	cd17748, BRCT_DNA_ligase_like, BRCT domain of bacterial NAD-dependent DNA ligase (LigA) and similar proteins	NA|230aa|down_0|NZ_CP018139.1_3486050_3486740_-	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|117aa|down_1|NZ_CP018139.1_3489160_3489511_+	NA	NA|294aa|down_2|NZ_CP018139.1_3490012_3490894_+	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional	NA|262aa|down_3|NZ_CP018139.1_3490961_3491747_-	cd05233, SDR_c, classical (c) SDRs	NA|316aa|down_4|NZ_CP018139.1_3491727_3492675_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|327aa|down_5|NZ_CP018139.1_3492671_3493652_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|278aa|down_6|NZ_CP018139.1_3493654_3494488_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|319aa|down_7|NZ_CP018139.1_3494489_3495446_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|531aa|down_8|NZ_CP018139.1_3495518_3497111_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|505aa|down_9|NZ_CP018139.1_3497151_3498666_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
