assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001886555.1_ASM188655v1	NZ_CP018115	Escherichia coli strain MRSN346638 chromosome, complete genome	1	468474-468618	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA|28aa|up_2|NZ_CP018115.1_466344_466428_+,NA	NA|372aa|up_9|NZ_CP018115.1_461100_462216_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP018115.1_462232_463042_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP018115.1_463161_463620_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP018115.1_463802_464327_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP018115.1_464376_464568_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP018115.1_464825_465503_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP018115.1_465574_465859_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP018115.1_466344_466428_+	NA	NA|304aa|up_1|NZ_CP018115.1_466505_467417_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP018115.1_467541_468450_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP018115.1_468694_469879_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP018115.1_470004_473151_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP018115.1_473147_474350_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP018115.1_474539_475229_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP018115.1_475286_476582_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP018115.1_476988_478308_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP018115.1_478383_479757_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP018115.1_479912_481730_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP018115.1_481734_482316_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP018115.1_482408_483479_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_001886555.1_ASM188655v1	NZ_CP018115	Escherichia coli strain MRSN346638 chromosome, complete genome	2	608663-608759	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA,NA	NA|454aa|up_9|NZ_CP018115.1_596443_597805_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP018115.1_597861_599163_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP018115.1_599184_600330_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP018115.1_600557_601343_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP018115.1_601353_602589_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP018115.1_602610_603660_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP018115.1_603976_605644_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP018115.1_605653_606913_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP018115.1_606923_607739_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP018115.1_607735_608629_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP018115.1_608823_609891_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP018115.1_609887_610397_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP018115.1_610514_611237_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP018115.1_611239_611734_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP018115.1_611907_613293_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP018115.1_613328_613850_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP018115.1_613957_614170_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP018115.1_614171_615038_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP018115.1_615508_616051_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP018115.1_616270_616963_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_001886555.1_ASM188655v1	NZ_CP018115	Escherichia coli strain MRSN346638 chromosome, complete genome	3	3034721-3034933	1,1,3	PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CTGCGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,TTTATCCCCGCTGGCGCGGGGAACAC	32,29,26	0	0	NA	NA	I-E:I-E:I-E	3,3,3	3	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA,NA	NA|254aa|up_9|NZ_CP018115.1_3026534_3027296_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP018115.1_3027276_3028326_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP018115.1_3028322_3028802_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP018115.1_3028801_3029512_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP018115.1_3029530_3029842_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP018115.1_3030035_3030359_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP018115.1_3030408_3031014_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP018115.1_3031013_3032441_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP018115.1_3032442_3033351_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP018115.1_3033602_3034640_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP018115.1_3035029_3035323_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP018115.1_3035319_3036243_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP018115.1_3036239_3036890_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP018115.1_3036871_3037618_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP018115.1_3037628_3038684_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP018115.1_3038698_3039235_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP018115.1_3039231_3040794_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP018115.1_3040891_3043591_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|371aa|down_8|NZ_CP018115.1_3043945_3045058_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|51aa|down_9|NZ_CP018115.1_3045134_3045287_-	pfam01848, HOK_GEF, Hok/gef family
GCF_001886555.1_ASM188655v1	NZ_CP018115	Escherichia coli strain MRSN346638 chromosome, complete genome	4	3063420-3064058	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,9	10	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA,NA	NA|87aa|up_9|NZ_CP018115.1_3051891_3052152_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP018115.1_3052168_3052744_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|NZ_CP018115.1_3052878_3054227_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|287aa|up_6|NZ_CP018115.1_3054326_3055187_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP018115.1_3055183_3055963_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP018115.1_3055940_3057350_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP018115.1_3057371_3058826_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP018115.1_3058895_3059681_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP018115.1_3059999_3061277_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP018115.1_3061303_3062782_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP018115.1_3064396_3065068_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP018115.1_3065361_3066234_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP018115.1_3066293_3067592_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP018115.1_3067678_3069316_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP018115.1_3069543_3070335_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP018115.1_3070406_3070742_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP018115.1_3070741_3070990_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP018115.1_3071067_3073302_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP018115.1_3073349_3074651_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP018115.1_3074707_3077464_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_001886555.1_ASM188655v1	NZ_CP018115	Escherichia coli strain MRSN346638 chromosome, complete genome	5	4670851-4671000	5	CRISPRCasFinder	no	RT	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Unclear	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT,cas14j	NA,NA|213aa|down_6|NZ_CP018115.1_4679543_4680182_+,NA|62aa|down_8|NZ_CP018115.1_4680886_4681072_-,NA|59aa|down_9|NZ_CP018115.1_4681259_4681436_+	NA|132aa|up_9|NZ_CP018115.1_4659380_4659776_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NZ_CP018115.1_4659906_4660620_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NZ_CP018115.1_4660690_4661284_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|NZ_CP018115.1_4661428_4661881_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NZ_CP018115.1_4663821_4664826_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP018115.1_4664987_4665404_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP018115.1_4665449_4665953_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP018115.1_4666145_4667333_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP018115.1_4667384_4670240_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP018115.1_4670239_4670683_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP018115.1_4671036_4672548_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP018115.1_4672814_4673915_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP018115.1_4673914_4674997_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP018115.1_4675157_4676660_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP018115.1_4676787_4677807_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|421aa|down_5|NZ_CP018115.1_4678251_4679514_+	PRK09692, PRK09692, integrase; Provisional	NA|213aa|down_6|NZ_CP018115.1_4679543_4680182_+	NA	NA|77aa|down_7|NZ_CP018115.1_4680559_4680790_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|62aa|down_8|NZ_CP018115.1_4680886_4681072_-	NA	NA|59aa|down_9|NZ_CP018115.1_4681259_4681436_+	NA
