assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	1	810796-810876	1	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	12	810822-810850|810822-810850|810822-810850|810822-810850|810822-810850|810822-810850|810822-810850|810822-810850|810822-810850|810822-810850|810822-810850|810822-810850	NZ_CP013132.1_2675268-2675296|NZ_CP013132.1_365498-365470|NZ_CP013132.1_1467929-1467901|NZ_CP013132.1_1785313-1785285|NZ_CP013132.1_164514-164486|NZ_CP013132.1_164572-164544|NZ_CP013132.1_816256-816284|NZ_CP013132.1_858232-858260|NZ_CP013132.1_858289-858317|NZ_CP013132.1_907060-907032|NZ_CP013132.1_1125162-1125134|NZ_CP013132.1_1602555-1602583	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA|35aa|up_7|NZ_CP013132.1_801709_801814_+,NA|36aa|up_5|NZ_CP013132.1_803246_803354_+,NA	NA|191aa|up_9|NZ_CP013132.1_798150_798723_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP013132.1_799136_801668_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP013132.1_801709_801814_+	NA	NA|370aa|up_6|NZ_CP013132.1_801982_803093_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP013132.1_803246_803354_+	NA	NA|280aa|up_4|NZ_CP013132.1_803501_804341_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP013132.1_804514_805165_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP013132.1_805161_805398_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP013132.1_805666_807652_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP013132.1_807659_810506_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP013132.1_811112_812045_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP013132.1_812050_812890_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP013132.1_812897_813383_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP013132.1_813390_814830_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP013132.1_814896_815832_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP013132.1_816596_817508_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP013132.1_817504_818500_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP013132.1_818610_819555_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP013132.1_820127_820715_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP013132.1_820957_821860_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	2	1040632-1040724	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	AAAAGCCCCTAACAACTAAAAGTTGTAAGG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|45aa|down_0|NZ_CP013132.1_1040733_1040868_-,NA|432aa|down_1|NZ_CP013132.1_1041019_1042315_+	NA|224aa|up_9|NZ_CP013132.1_1028427_1029099_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP013132.1_1029091_1031281_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP013132.1_1031259_1032744_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP013132.1_1032736_1033765_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP013132.1_1033767_1034334_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP013132.1_1034348_1035827_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP013132.1_1035848_1037096_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP013132.1_1037360_1038167_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP013132.1_1038159_1039560_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP013132.1_1039574_1040150_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP013132.1_1040733_1040868_-	NA	NA|432aa|down_1|NZ_CP013132.1_1041019_1042315_+	NA	NA|391aa|down_2|NZ_CP013132.1_1042739_1043912_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP013132.1_1043965_1044508_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP013132.1_1044661_1044928_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP013132.1_1044930_1046649_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP013132.1_1046885_1047119_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP013132.1_1047316_1048678_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP013132.1_1048674_1049694_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP013132.1_1049826_1050489_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	3	1198033-1198125	3	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TAAGAAACACTAATCAATAAATTGATAAG	29	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|215aa|up_9|NZ_CP013132.1_1187844_1188489_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP013132.1_1188495_1189137_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP013132.1_1189517_1189706_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP013132.1_1190148_1190523_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP013132.1_1190537_1192184_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP013132.1_1192373_1194434_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP013132.1_1194636_1195209_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP013132.1_1195213_1196200_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP013132.1_1196192_1197119_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP013132.1_1197111_1197846_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP013132.1_1198215_1198449_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP013132.1_1198564_1199296_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP013132.1_1199442_1203009_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP013132.1_1203008_1204259_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP013132.1_1204245_1204578_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP013132.1_1204603_1205971_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP013132.1_1206405_1206681_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP013132.1_1206868_1207372_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP013132.1_1207371_1208109_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP013132.1_1208211_1208562_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	4	1208872-1208957	4	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	8	1208902-1208927|1208902-1208927|1208902-1208927|1208902-1208927|1208902-1208927|1208902-1208927|1208902-1208927|1208902-1208927	NZ_CP013132.1_2675205-2675180|NZ_CP013132.1_287853-287878|NZ_CP013132.1_858605-858580|NZ_CP013132.1_2675261-2675236|NZ_CP013132.1_779221-779246|NZ_CP013132.1_779277-779302|NZ_CP013132.1_779333-779358|NZ_CP013132.1_823454-823429	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|78aa|up_9|NZ_CP013132.1_1198215_1198449_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|up_8|NZ_CP013132.1_1198564_1199296_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|up_7|NZ_CP013132.1_1199442_1203009_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|up_6|NZ_CP013132.1_1203008_1204259_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|up_5|NZ_CP013132.1_1204245_1204578_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|up_4|NZ_CP013132.1_1204603_1205971_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|up_3|NZ_CP013132.1_1206405_1206681_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|up_2|NZ_CP013132.1_1206868_1207372_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|up_1|NZ_CP013132.1_1207371_1208109_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|up_0|NZ_CP013132.1_1208211_1208562_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|869aa|down_0|NZ_CP013132.1_1209030_1211637_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|295aa|down_1|NZ_CP013132.1_1212037_1212922_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|256aa|down_2|NZ_CP013132.1_1212905_1213673_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|389aa|down_3|NZ_CP013132.1_1213781_1214948_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|303aa|down_4|NZ_CP013132.1_1214969_1215878_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|373aa|down_5|NZ_CP013132.1_1216104_1217223_+	pfam01476, LysM, LysM domain	NA|415aa|down_6|NZ_CP013132.1_1217250_1218495_+	pfam02388, FemAB, FemAB family	NA|291aa|down_7|NZ_CP013132.1_1218667_1219540_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|692aa|down_8|NZ_CP013132.1_1219713_1221789_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|436aa|down_9|NZ_CP013132.1_1221944_1223252_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	5	1635370-1635455	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TCTGTGTTGGGGCCCCATCCCCAACTT	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|49aa|down_2|NZ_CP013132.1_1639460_1639607_-,NA|43aa|down_7|NZ_CP013132.1_1642643_1642772_-	NA|208aa|up_9|NZ_CP013132.1_1624106_1624730_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP013132.1_1624729_1625998_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP013132.1_1626009_1626933_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP013132.1_1626935_1627574_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP013132.1_1627858_1628167_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP013132.1_1628181_1628610_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP013132.1_1628613_1628874_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP013132.1_1628936_1631567_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP013132.1_1631909_1634387_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP013132.1_1634388_1635057_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP013132.1_1635637_1636756_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP013132.1_1636756_1637899_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|49aa|down_2|NZ_CP013132.1_1639460_1639607_-	NA	NA|61aa|down_3|NZ_CP013132.1_1639646_1639829_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_4|NZ_CP013132.1_1639928_1640351_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_5|NZ_CP013132.1_1640435_1641710_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_6|NZ_CP013132.1_1641870_1642644_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_7|NZ_CP013132.1_1642643_1642772_-	NA	NA|589aa|down_8|NZ_CP013132.1_1643104_1644871_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|421aa|down_9|NZ_CP013132.1_1644886_1646149_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	6	1727925-1728011	6	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACATAGA	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|33aa|down_4|NZ_CP013132.1_1732335_1732434_-	NA|423aa|up_9|NZ_CP013132.1_1712302_1713571_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP013132.1_1713619_1714741_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP013132.1_1715088_1716450_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP013132.1_1716797_1718555_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP013132.1_1718576_1719545_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP013132.1_1719813_1720758_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP013132.1_1720757_1721615_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP013132.1_1721809_1723039_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP013132.1_1723488_1726686_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP013132.1_1726706_1727648_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP013132.1_1728101_1729400_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP013132.1_1729604_1730018_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP013132.1_1730322_1731012_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP013132.1_1731186_1732242_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|33aa|down_4|NZ_CP013132.1_1732335_1732434_-	NA	NA|373aa|down_5|NZ_CP013132.1_1732557_1733676_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_CP013132.1_1733816_1734317_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_CP013132.1_1734562_1735765_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_CP013132.1_1735852_1736800_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_CP013132.1_1736922_1737417_-	PRK00522, tpx, thiol peroxidase
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	7	1900450-1900577	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|132aa|up_7|NZ_CP013132.1_1892603_1892999_-,NA|51aa|up_6|NZ_CP013132.1_1893604_1893757_-,NA	NA|274aa|up_9|NZ_CP013132.1_1889740_1890562_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP013132.1_1891022_1892408_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP013132.1_1892603_1892999_-	NA	NA|51aa|up_6|NZ_CP013132.1_1893604_1893757_-	NA	NA|200aa|up_5|NZ_CP013132.1_1893781_1894381_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP013132.1_1894539_1895010_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_3|NZ_CP013132.1_1895014_1896142_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|241aa|up_2|NZ_CP013132.1_1896293_1897016_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP013132.1_1897008_1898466_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP013132.1_1898723_1899785_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP013132.1_1908645_1909092_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP013132.1_1909188_1910139_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP013132.1_1910144_1910600_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP013132.1_1910680_1911970_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP013132.1_1912262_1913357_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP013132.1_1913548_1915285_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP013132.1_1915575_1916118_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP013132.1_1916419_1917457_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP013132.1_1917608_1918586_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP013132.1_1918846_1919683_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	8	2126731-2126811	8	CRISPRCasFinder	no	csa3	WYL,cas3,DEDDh,DinG,csa3	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|77aa|up_5|NZ_CP013132.1_2121602_2121833_-,NA|364aa|up_0|NZ_CP013132.1_2125622_2126714_+,NA|35aa|down_0|NZ_CP013132.1_2127146_2127251_-,NA|53aa|down_1|NZ_CP013132.1_2127930_2128089_+	NA|237aa|up_9|NZ_CP013132.1_2117212_2117923_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP013132.1_2118043_2118487_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP013132.1_2118686_2119100_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP013132.1_2119557_2120931_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP013132.1_2121602_2121833_-	NA	NA|313aa|up_4|NZ_CP013132.1_2121863_2122802_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP013132.1_2123237_2123903_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP013132.1_2124054_2124375_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP013132.1_2124376_2125357_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP013132.1_2125622_2126714_+	NA	NA|35aa|down_0|NZ_CP013132.1_2127146_2127251_-	NA	NA|53aa|down_1|NZ_CP013132.1_2127930_2128089_+	NA	NA|286aa|down_2|NZ_CP013132.1_2128747_2129605_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP013132.1_2129672_2130455_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP013132.1_2130686_2132492_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP013132.1_2133172_2134711_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP013132.1_2134745_2136878_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP013132.1_2136889_2137324_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP013132.1_2137323_2138430_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_9|NZ_CP013132.1_2146540_2147896_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	9	2139053-2139139	9	CRISPRCasFinder	no	csa3	WYL,cas3,DEDDh,DinG,csa3	Type I-A	GCCAACTGATGTTTGCGTATCATTAGT	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|364aa|up_9|NZ_CP013132.1_2125622_2126714_+,NA|35aa|up_8|NZ_CP013132.1_2127146_2127251_-,NA|53aa|up_7|NZ_CP013132.1_2127930_2128089_+,NA	NA|364aa|up_9|NZ_CP013132.1_2125622_2126714_+	NA	NA|35aa|up_8|NZ_CP013132.1_2127146_2127251_-	NA	NA|53aa|up_7|NZ_CP013132.1_2127930_2128089_+	NA	NA|286aa|up_6|NZ_CP013132.1_2128747_2129605_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP013132.1_2129672_2130455_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP013132.1_2130686_2132492_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP013132.1_2133172_2134711_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP013132.1_2134745_2136878_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP013132.1_2136889_2137324_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP013132.1_2137323_2138430_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP013132.1_2146540_2147896_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP013132.1_2147922_2148855_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP013132.1_2148856_2149666_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP013132.1_2149854_2150763_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP013132.1_2156956_2158021_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP013132.1_2158168_2159611_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP013132.1_2159933_2160407_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP013132.1_2160505_2161849_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP013132.1_2162025_2162709_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP013132.1_2162727_2163915_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	10	2238237-2238322	10	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	1	2238267-2238292	NZ_CP013132.1_1125083-1125058	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_9|NZ_CP013132.1_2228808_2228973_+,NA|106aa|up_8|NZ_CP013132.1_2229217_2229535_+,NA|84aa|up_5|NZ_CP013132.1_2234656_2234908_+,NA|57aa|up_0|NZ_CP013132.1_2238047_2238218_+,NA	NA|55aa|up_9|NZ_CP013132.1_2228808_2228973_+	NA	NA|106aa|up_8|NZ_CP013132.1_2229217_2229535_+	NA	NA|1056aa|up_7|NZ_CP013132.1_2229718_2232886_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP013132.1_2233002_2234268_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP013132.1_2234656_2234908_+	NA	NA|255aa|up_4|NZ_CP013132.1_2234899_2235664_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP013132.1_2235825_2236266_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP013132.1_2236258_2237470_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP013132.1_2237571_2237922_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP013132.1_2238047_2238218_+	NA	NA|341aa|down_0|NZ_CP013132.1_2238499_2239522_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP013132.1_2239541_2240141_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP013132.1_2240147_2240381_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP013132.1_2240386_2240833_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP013132.1_2240846_2241332_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP013132.1_2241328_2242588_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP013132.1_2242650_2243145_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP013132.1_2243146_2243653_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP013132.1_2243683_2244688_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP013132.1_2244857_2245463_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	11	2405187-2405265	11	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCATTGTCTCTAGAAA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|56aa|up_2|NZ_CP013132.1_2400968_2401136_-,NA|36aa|down_0|NZ_CP013132.1_2405571_2405679_-	NA|326aa|up_9|NZ_CP013132.1_2394579_2395557_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|up_8|NZ_CP013132.1_2395608_2396076_-	pfam06177, QueT, QueT transporter	NA|231aa|up_7|NZ_CP013132.1_2396086_2396779_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|up_6|NZ_CP013132.1_2396789_2397905_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|up_5|NZ_CP013132.1_2397882_2398890_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|up_4|NZ_CP013132.1_2398891_2400250_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|229aa|up_3|NZ_CP013132.1_2400227_2400914_-	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|56aa|up_2|NZ_CP013132.1_2400968_2401136_-	NA	NA|578aa|up_1|NZ_CP013132.1_2401366_2403100_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|588aa|up_0|NZ_CP013132.1_2403124_2404888_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|36aa|down_0|NZ_CP013132.1_2405571_2405679_-	NA	NA|129aa|down_1|NZ_CP013132.1_2405812_2406199_-	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|381aa|down_2|NZ_CP013132.1_2406456_2407599_+	TIGR00045, Glycerate_kinase, glycerate kinase	NA|220aa|down_3|NZ_CP013132.1_2407658_2408318_+	PHA02562, 46, endonuclease subunit; Provisional	NA|404aa|down_4|NZ_CP013132.1_2408499_2409711_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|158aa|down_5|NZ_CP013132.1_2409833_2410307_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|219aa|down_6|NZ_CP013132.1_2410419_2411076_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|269aa|down_7|NZ_CP013132.1_2411138_2411945_-	TIGR03729, acc_ester, putative phosphoesterase	NA|470aa|down_8|NZ_CP013132.1_2412230_2413640_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|693aa|down_9|NZ_CP013132.1_2413777_2415856_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
GCF_001879545.1_ASM187954v1	NZ_CP013132	Staphylococcus aureus strain FORC_026 chromosome, complete genome	12	2543069-2543176	12	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	ATTATTATAAATAATAAGTACACTACGGTTTACAGTTGG	39	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|56aa|up_4|NZ_CP013132.1_2537209_2537377_-,NA|64aa|up_1|NZ_CP013132.1_2540060_2540252_+,NA|163aa|down_7|NZ_CP013132.1_2551185_2551674_-	NA|57aa|up_9|NZ_CP013132.1_2531319_2531490_-	pfam12669, P12, Virus attachment protein p12 family	NA|665aa|up_8|NZ_CP013132.1_2531502_2533497_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|up_7|NZ_CP013132.1_2533508_2533736_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|830aa|up_6|NZ_CP013132.1_2533951_2536441_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|183aa|up_5|NZ_CP013132.1_2536585_2537134_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|56aa|up_4|NZ_CP013132.1_2537209_2537377_-	NA	NA|515aa|up_3|NZ_CP013132.1_2537488_2539033_-	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional	NA|200aa|up_2|NZ_CP013132.1_2539222_2539822_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|64aa|up_1|NZ_CP013132.1_2540060_2540252_+	NA	NA|803aa|up_0|NZ_CP013132.1_2540491_2542900_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|69aa|down_0|NZ_CP013132.1_2543248_2543455_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|333aa|down_1|NZ_CP013132.1_2543544_2544543_-	PRK08605, PRK08605, D-lactate dehydrogenase; Validated	NA|385aa|down_2|NZ_CP013132.1_2544565_2545720_-	PRK08068, PRK08068, transaminase; Reviewed	NA|503aa|down_3|NZ_CP013132.1_2546146_2547655_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|288aa|down_4|NZ_CP013132.1_2547666_2548530_-	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|376aa|down_5|NZ_CP013132.1_2548566_2549694_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|498aa|down_6|NZ_CP013132.1_2549699_2551193_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|163aa|down_7|NZ_CP013132.1_2551185_2551674_-	NA	NA|256aa|down_8|NZ_CP013132.1_2551848_2552616_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|down_9|NZ_CP013132.1_2552976_2554788_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]
