The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018004	Enterococcus faecalis strain L9 chromosome, complete genome	2693039	551464	559410	2693039	tRNA,transposase	Staphylococcus_phage(66.67%)	8	NA	NA
WP_002364766.1|551464_553879_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
WP_010828580.1|554091_555672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002376017.1|555637_556576_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	41.6	1.8e-54
WP_071646588.1|556577_556877_-	hypothetical protein	NA	A0A0N7GFG6	Staphylococcus_phage	54.4	2.5e-13
WP_071646855.1|556794_557082_+|transposase	transposase	transposase	A0A0N7GFG6	Staphylococcus_phage	57.3	7.6e-20
WP_080487736.1|557096_557858_+	hypothetical protein	NA	A0A0N9SIX5	Staphylococcus_phage	56.5	1.9e-33
WP_010707805.1|557930_558761_-	amino acid ABC transporter amino acid-binding protein	NA	NA	NA	NA	NA
WP_002355681.1|558774_559410_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.1	2.1e-30
>prophage 2
NZ_CP018004	Enterococcus faecalis strain L9 chromosome, complete genome	2693039	1044041	1061810	2693039	tail,holin	Enterococcus_phage(42.86%)	21	NA	NA
WP_002366550.1|1044041_1046435_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.1	1.7e-19
WP_002360497.1|1046459_1046810_+	ribosome-binding factor A	NA	NA	NA	NA	NA
WP_010715121.1|1046892_1047123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002357857.1|1047182_1047656_-	toxin	NA	A0A097BY56	Enterococcus_phage	71.2	1.1e-60
WP_002357856.1|1047702_1048185_-	XRE family transcriptional regulator	NA	R9QTP6	Staphylococcus_phage	48.6	1.2e-20
WP_002379367.1|1048353_1048536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080280083.1|1048566_1049337_+	DnaD domain protein	NA	A0A0K0MX39	Streptococcus_phage	57.0	2.5e-33
WP_002384644.1|1049355_1050198_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	31.0	5.7e-31
WP_010706586.1|1050200_1050293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080280084.1|1050285_1050657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002360491.1|1050676_1051084_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002381949.1|1051329_1051722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002365550.1|1051734_1052247_+|tail	phage major tail protein, TP901-1 family	tail	W6LP72	Streptococcus_phage	49.4	8.8e-35
WP_002357848.1|1052279_1052639_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	32.2	7.6e-09
WP_002361692.1|1052656_1053025_+	hypothetical protein	NA	A0A1P8BLR3	Lactococcus_phage	33.3	1.3e-08
WP_071646670.1|1053014_1055948_+	hypothetical protein	NA	W8EBC4	Geobacillus_phage	41.2	6.9e-15
WP_071646671.1|1055949_1056876_+|tail	phage tail family protein	tail	C9E2K5	Enterococcus_phage	78.6	4.1e-147
WP_033786110.1|1056888_1058346_+	phage minor structural protein	NA	C9E2K6	Enterococcus_phage	47.7	1.9e-175
WP_071646672.1|1058378_1060148_+	hypothetical protein	NA	A0A097BYA8	Enterococcus_phage	71.8	1.7e-141
WP_002357842.1|1060171_1060567_+|holin	holin	holin	F0PIJ6	Enterococcus_phage	48.9	2.8e-33
WP_010713467.1|1060712_1061810_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	44.6	4.0e-77
>prophage 3
NZ_CP018004	Enterococcus faecalis strain L9 chromosome, complete genome	2693039	1483146	1491790	2693039		Synechococcus_phage(50.0%)	9	NA	NA
WP_002366811.1|1483146_1483719_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.1	4.1e-25
WP_049096018.1|1483715_1484747_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D8KMR0	Synechococcus_phage	45.6	1.5e-57
WP_010823741.1|1484748_1486188_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.2	2.1e-49
WP_049096016.1|1486163_1488383_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	1.7e-146
WP_002361952.1|1488379_1489054_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002357271.1|1489054_1489306_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002357270.1|1489319_1490033_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3ELR0	Synechococcus_phage	43.0	4.3e-48
WP_002371924.1|1490184_1491309_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_010707494.1|1491301_1491790_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	41.4	3.2e-18
>prophage 4
NZ_CP018004	Enterococcus faecalis strain L9 chromosome, complete genome	2693039	1631533	1669558	2693039	plate,tRNA,head,holin,portal,tail	Enterococcus_phage(26.67%)	46	NA	NA
WP_071646740.1|1631533_1633303_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L424	Tupanvirus	30.3	3.0e-13
WP_002362049.1|1633320_1634622_-|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	26.8	8.8e-23
WP_002362050.1|1634618_1634867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010712597.1|1634979_1635426_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_002357079.1|1635449_1637663_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	38.0	1.3e-10
WP_010712598.1|1637877_1638630_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_002357075.1|1638631_1639579_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_010712599.1|1639594_1640080_-	DUF3013 domain-containing protein	NA	NA	NA	NA	NA
WP_029656000.1|1640036_1640726_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
WP_002360030.1|1640842_1642120_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	49.9	1.8e-105
WP_002357068.1|1642393_1642726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002357065.1|1642903_1643377_+	universal stress protein	NA	NA	NA	NA	NA
WP_002357064.1|1643488_1644676_-	acetate kinase	NA	NA	NA	NA	NA
WP_002357063.1|1644700_1645708_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_016618446.1|1645836_1646190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010707381.1|1646189_1646624_-	prepilin-type cleavage/methylation protein	NA	NA	NA	NA	NA
WP_080120712.1|1646613_1647081_-	type II secretion system protein	NA	NA	NA	NA	NA
WP_002364184.1|1647317_1647443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002364185.1|1647739_1648681_-	ferrochelatase	NA	NA	NA	NA	NA
WP_010707379.1|1649417_1649642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002357053.1|1649739_1649940_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	80.3	1.6e-24
WP_002370962.1|1650776_1652018_-	1,4-beta-N-acetylmuramidase	NA	A0A0S2MYF3	Enterococcus_phage	71.7	6.6e-169
WP_002384371.1|1652018_1652252_-|holin	phage holin	holin	D2J020	Enterococcus_phage	87.8	1.9e-29
WP_002364191.1|1652244_1652466_-	hypothetical protein	NA	D2J019	Enterococcus_phage	93.2	2.5e-31
WP_002364192.1|1652500_1652656_-	XkdX family protein	NA	A0A1W6JQ64	Staphylococcus_phage	55.6	7.2e-09
WP_080487750.1|1652657_1652978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002364194.1|1652991_1653483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002357046.1|1653482_1653770_-	collagen-like protein	NA	NA	NA	NA	NA
WP_002357045.1|1653766_1654363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002387290.1|1654355_1655237_-|plate	phage baseplate upper protein	plate	Q9AYV5	Lactococcus_phage	28.6	8.6e-14
WP_080370108.1|1655255_1658048_-	CHAP domain-containing protein	NA	Q9AZX5	Lactococcus_phage	38.7	8.8e-145
WP_002397451.1|1658044_1658779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080487751.1|1658768_1661693_-|tail	tail tape measure protein	tail	D7RWD8	Brochothrix_phage	47.4	6.1e-80
WP_002357039.1|1661913_1662264_-	hypothetical protein	NA	A0A2H4JAA8	uncultured_Caudovirales_phage	33.3	2.9e-05
WP_071646742.1|1662316_1663165_-|tail	phage tail protein	tail	A0A288TYF3	Enterococcus_phage	43.7	1.4e-05
WP_070702966.1|1663165_1663540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002357036.1|1663542_1663941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080005139.1|1663933_1664245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002387282.1|1664298_1664643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002357032.1|1664656_1664839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002357030.1|1664867_1665755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070702964.1|1665768_1666392_-	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_070702963.1|1666543_1666723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071646743.1|1666729_1667050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070702961.1|1667052_1668096_-|head	phage head morphogenesis protein	head	NA	NA	NA	NA
WP_002397462.1|1668073_1669558_-|portal	phage portal protein	portal	A0A0A7AQF2	Bacillus_phage	25.5	2.5e-29
>prophage 5
NZ_CP018004	Enterococcus faecalis strain L9 chromosome, complete genome	2693039	1675429	1686353	2693039	integrase	Enterococcus_phage(30.0%)	19	1667524:1667537	1687136:1687149
1667524:1667537	attL	ATTGCCCCATAAAC	NA	NA	NA	NA
WP_002357018.1|1675429_1675846_-	autolysin	NA	D2IZ17	Enterococcus_phage	99.3	1.4e-67
WP_002389926.1|1676213_1676474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002364343.1|1677158_1678016_-	helix-turn-helix domain-containing protein	NA	A0A0P0ICZ8	Lactobacillus_phage	36.1	1.1e-24
WP_002357010.1|1678015_1678216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002364344.1|1678220_1678862_-	hypothetical protein	NA	U5U4M2	Lactobacillus_phage	36.0	4.8e-30
WP_002364345.1|1678866_1679601_-	single-stranded DNA-binding protein	NA	A0A1W6JNQ5	Staphylococcus_phage	29.9	2.3e-20
WP_002357007.1|1679593_1679911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002357006.1|1680130_1680685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002364346.1|1680665_1680872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070702955.1|1680969_1681308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002357002.1|1681344_1681554_-	hypothetical protein	NA	D2IZ57	Enterococcus_phage	72.6	8.8e-18
WP_002357001.1|1681608_1681797_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
WP_002387270.1|1681822_1682545_-	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	46.5	5.6e-43
WP_002403885.1|1682567_1682879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071646744.1|1682890_1683082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002387267.1|1683377_1683719_+	XRE family transcriptional regulator	NA	A0A1P8BMG3	Lactococcus_phage	46.8	3.2e-17
WP_002387266.1|1683723_1684374_+	ImmA/IrrE family metallo-endopeptidase	NA	S4U0J6	uncultured_phage	29.9	9.2e-13
WP_010706502.1|1684484_1685099_+	SHOCT domain-containing protein	NA	O48432	Lactobacillus_phage	33.6	2.6e-09
WP_002387264.1|1685204_1686353_+|integrase	site-specific integrase	integrase	A0A1C8E994	Bacillus_phage	29.9	1.1e-37
1687136:1687149	attR	ATTGCCCCATAAAC	NA	NA	NA	NA
>prophage 6
NZ_CP018004	Enterococcus faecalis strain L9 chromosome, complete genome	2693039	2214167	2223906	2693039		Streptococcus_phage(57.14%)	11	NA	NA
WP_002385686.1|2214167_2216351_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.8	3.1e-286
WP_002356379.1|2216383_2216980_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.4	6.0e-51
WP_016630017.1|2217024_2218143_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002356377.1|2218268_2219027_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_002356375.1|2219010_2219673_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.1	6.7e-19
WP_002356373.1|2219687_2220560_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	57.6	6.2e-81
WP_002356372.1|2220671_2221019_-	initiation-control protein YabA	NA	M1PFV3	Streptococcus_phage	36.7	8.1e-16
WP_002356371.1|2221011_2221851_-	signal peptidase II	NA	NA	NA	NA	NA
WP_002384059.1|2221966_2222917_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.0	6.2e-34
WP_002356367.1|2222918_2223248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002382493.1|2223267_2223906_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	53.8	2.8e-54
