assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001870165.1_ASM187016v1	NZ_CP017934	Klebsiella pneumoniae strain CAV1016 chromosome, complete genome	1	110861-110966	1	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|38aa|up_6|NZ_CP017934.1_102423_102537_+,NA|44aa|down_6|NZ_CP017934.1_117394_117526_-,NA|72aa|down_9|NZ_CP017934.1_121051_121267_+	NA|217aa|up_9|NZ_CP017934.1_98158_98809_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|593aa|up_8|NZ_CP017934.1_98819_100598_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|463aa|up_7|NZ_CP017934.1_100909_102298_+	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|38aa|up_6|NZ_CP017934.1_102423_102537_+	NA	NA|1248aa|up_5|NZ_CP017934.1_102703_106447_+	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|512aa|up_4|NZ_CP017934.1_106443_107979_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_3|NZ_CP017934.1_107975_108686_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_2|NZ_CP017934.1_108685_109363_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|299aa|up_1|NZ_CP017934.1_109359_110256_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|148aa|up_0|NZ_CP017934.1_110363_110807_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|281aa|down_0|NZ_CP017934.1_111881_112724_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|157aa|down_1|NZ_CP017934.1_112766_113237_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|301aa|down_2|NZ_CP017934.1_113337_114240_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|NZ_CP017934.1_114329_115343_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|301aa|down_4|NZ_CP017934.1_115540_116443_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|136aa|down_5|NZ_CP017934.1_116564_116972_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|44aa|down_6|NZ_CP017934.1_117394_117526_-	NA	NA|206aa|down_7|NZ_CP017934.1_117533_118151_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|892aa|down_8|NZ_CP017934.1_118298_120974_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|72aa|down_9|NZ_CP017934.1_121051_121267_+	NA
GCF_001870165.1_ASM187016v1	NZ_CP017934	Klebsiella pneumoniae strain CAV1016 chromosome, complete genome	2	1880706-1880829	2	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	AGGCCCGGTAAGCGCAGCGCCACCGGGCGATGCTATCA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|46aa|down_3|NZ_CP017934.1_1884836_1884974_-,NA|42aa|down_4|NZ_CP017934.1_1884936_1885062_+,NA|130aa|down_6|NZ_CP017934.1_1885750_1886140_-	NA|181aa|up_9|NZ_CP017934.1_1871113_1871656_+	pfam11354, DUF3156, Protein of unknown function (DUF3156)	NA|121aa|up_8|NZ_CP017934.1_1871673_1872036_-	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|101aa|up_7|NZ_CP017934.1_1872036_1872339_-	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	NA|372aa|up_6|NZ_CP017934.1_1872422_1873538_-	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII	NA|391aa|up_5|NZ_CP017934.1_1873554_1874727_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|228aa|up_4|NZ_CP017934.1_1874844_1875528_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|396aa|up_3|NZ_CP017934.1_1875953_1877141_+	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|578aa|up_2|NZ_CP017934.1_1877185_1878919_+	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|259aa|up_1|NZ_CP017934.1_1879006_1879783_+	cd05233, SDR_c, classical (c) SDRs	NA|264aa|up_0|NZ_CP017934.1_1879808_1880600_+	pfam17409, MoaF_C, MoaF C-terminal domain	NA|318aa|down_0|NZ_CP017934.1_1881564_1882518_-	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)	NA|259aa|down_1|NZ_CP017934.1_1882646_1883423_-	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|393aa|down_2|NZ_CP017934.1_1883442_1884621_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|46aa|down_3|NZ_CP017934.1_1884836_1884974_-	NA	NA|42aa|down_4|NZ_CP017934.1_1884936_1885062_+	NA	NA|152aa|down_5|NZ_CP017934.1_1885126_1885582_-	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|130aa|down_6|NZ_CP017934.1_1885750_1886140_-	NA	NA|373aa|down_7|NZ_CP017934.1_1886411_1887530_+	cd01139, TroA_f, Periplasmic binding protein TroA_f	NA|343aa|down_8|NZ_CP017934.1_1887591_1888620_+	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|266aa|down_9|NZ_CP017934.1_1888616_1889414_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
GCF_001870165.1_ASM187016v1	NZ_CP017934	Klebsiella pneumoniae strain CAV1016 chromosome, complete genome	3	2425072-2425166	3	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ACTATGGTTTTTATGGTTTTTATT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|256aa|up_9|NZ_CP017934.1_2410391_2411159_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|282aa|up_8|NZ_CP017934.1_2411287_2412133_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|570aa|up_7|NZ_CP017934.1_2412470_2414180_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_6|NZ_CP017934.1_2414190_2415693_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|up_5|NZ_CP017934.1_2415830_2416526_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|786aa|up_4|NZ_CP017934.1_2416701_2419059_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|up_3|NZ_CP017934.1_2419246_2422153_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_2|NZ_CP017934.1_2422165_2422825_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|180aa|up_1|NZ_CP017934.1_2422899_2423439_-	TIGR03124, citrate_citX, holo-ACP synthase CitX	NA|455aa|up_0|NZ_CP017934.1_2423618_2424983_-	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|542aa|down_0|NZ_CP017934.1_2425307_2426933_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|233aa|down_1|NZ_CP017934.1_2426922_2427621_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|276aa|down_2|NZ_CP017934.1_2427653_2428481_-	PRK09430, djlA, co-chaperone DjlA	NA|783aa|down_3|NZ_CP017934.1_2428724_2431073_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_4|NZ_CP017934.1_2431127_2432414_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_5|NZ_CP017934.1_2432419_2433409_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_6|NZ_CP017934.1_2433405_2434227_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_7|NZ_CP017934.1_2434229_2434607_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|283aa|down_8|NZ_CP017934.1_2434611_2435460_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|down_9|NZ_CP017934.1_2435886_2436366_-	PRK10769, folA, type 3 dihydrofolate reductase
GCF_001870165.1_ASM187016v1	NZ_CP017934	Klebsiella pneumoniae strain CAV1016 chromosome, complete genome	4	4389498-4393425	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,cas3,RT,csa3,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	4	4	4390196-4390227|4391843-4391874|4392697-4392728|4393307-4393338	NZ_CP017935.1_48056-48025|NZ_CP017935.1_36841-36810|NZ_CP017934.1_4904941-4904972|NZ_CP017935.1_37917-37886	I-E:I-E:I-E	63,64,64	64	TypeI-E	DEDDh,cas3,RT,csa3,DinG,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|571aa|up_9|NZ_CP017934.1_4378207_4379920_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP017934.1_4380018_4380753_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|888aa|up_7|NZ_CP017934.1_4380959_4383623_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP017934.1_4383634_4385191_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|181aa|up_5|NZ_CP017934.1_4385187_4385730_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP017934.1_4385748_4386804_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP017934.1_4386814_4387561_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP017934.1_4387542_4388193_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP017934.1_4388189_4389110_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP017934.1_4389109_4389403_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|674aa|down_0|NZ_CP017934.1_4393505_4395527_-	cd18422, BTB_POZ_KCNG3, BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily G member 3 (KCNG3)	NA|396aa|down_1|NZ_CP017934.1_4395513_4396701_-	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|352aa|down_2|NZ_CP017934.1_4396736_4397792_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|469aa|down_3|NZ_CP017934.1_4398038_4399445_+	PRK10637, cysG, siroheme synthase CysG	NA|303aa|down_4|NZ_CP017934.1_4399454_4400363_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_5|NZ_CP017934.1_4400372_4401800_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_6|NZ_CP017934.1_4401799_4402405_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|109aa|down_7|NZ_CP017934.1_4402455_4402782_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|106aa|down_8|NZ_CP017934.1_4402922_4403240_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_9|NZ_CP017934.1_4403259_4403970_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase
