assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001870085.1_ASM187008v1	NZ_CP017859	Campylobacter jejuni strain YQ2210 chromosome, complete genome	1	103961-104068	1	CRISPRCasFinder	no		DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	Orphan	AATCATTAAAATGCTAAAACAAAGT	25	1	1	103986-104043	NZ_CP017859.1_191078-191021	NA	1	1	Orphan	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	NA,NA|269aa|down_6|NZ_CP017859.1_110980_111787_-	NA|293aa|up_9|NZ_CP017859.1_92255_93134_+	PRK01212, PRK01212, homoserine kinase; Provisional	NA|86aa|up_8|NZ_CP017859.1_93158_93416_+	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|872aa|up_7|NZ_CP017859.1_93402_96018_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|121aa|up_6|NZ_CP017859.1_96014_96377_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|141aa|up_5|NZ_CP017859.1_96366_96789_+	PRK14639, PRK14639, ribosome maturation factor RimP	NA|590aa|up_4|NZ_CP017859.1_96845_98615_+	PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional	NA|446aa|up_3|NZ_CP017859.1_98601_99939_+	COG4268, McrC, McrBC 5-methylcytosine restriction system component [Defense mechanisms]	NA|268aa|up_2|NZ_CP017859.1_99927_100731_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|285aa|up_1|NZ_CP017859.1_100723_101578_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|297aa|up_0|NZ_CP017859.1_101590_102481_-	cd01018, ZntC, Metal binding protein ZntC	NA|594aa|down_0|NZ_CP017859.1_104915_106697_+	COG3211, PhoX, Predicted phosphatase [General function prediction only]	NA|313aa|down_1|NZ_CP017859.1_106734_107673_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|105aa|down_2|NZ_CP017859.1_107806_108121_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|113aa|down_3|NZ_CP017859.1_108177_108516_-	COG0792, COG0792, Predicted endonuclease distantly related to archaeal Holliday junction resolvase [DNA replication, recombination, and repair]	NA|416aa|down_4|NZ_CP017859.1_108515_109763_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|401aa|down_5|NZ_CP017859.1_109766_110969_-	PRK08636, PRK08636, LL-diaminopimelate aminotransferase	NA|269aa|down_6|NZ_CP017859.1_110980_111787_-	NA	NA|313aa|down_7|NZ_CP017859.1_111780_112719_-	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|228aa|down_8|NZ_CP017859.1_112711_113395_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|279aa|down_9|NZ_CP017859.1_113396_114233_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]
GCF_001870085.1_ASM187008v1	NZ_CP017859	Campylobacter jejuni strain YQ2210 chromosome, complete genome	2	1003164-1003250	2	CRISPRCasFinder	no		DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	Orphan	TTCAAACCCATCATATTGCCATAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	NA|155aa|up_1|NZ_CP017859.1_1000975_1001440_+,NA|417aa|up_0|NZ_CP017859.1_1001436_1002687_+,NA|189aa|down_0|NZ_CP017859.1_1003518_1004085_+,NA|211aa|down_2|NZ_CP017859.1_1004519_1005152_+,NA|137aa|down_3|NZ_CP017859.1_1005295_1005706_+,NA|664aa|down_4|NZ_CP017859.1_1005705_1007697_+,NA|204aa|down_5|NZ_CP017859.1_1007698_1008310_+,NA|148aa|down_6|NZ_CP017859.1_1008491_1008935_+,NA|847aa|down_8|NZ_CP017859.1_1009824_1012365_+	NA|162aa|up_9|NZ_CP017859.1_989623_990109_+	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2	NA|131aa|up_8|NZ_CP017859.1_991566_991959_+	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein	NA|574aa|up_7|NZ_CP017859.1_991955_993677_+	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family	NA|303aa|up_6|NZ_CP017859.1_993673_994582_+	pfam06996, T6SS_TssG, Type VI secretion, TssG	NA|883aa|up_5|NZ_CP017859.1_994732_997381_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|315aa|up_4|NZ_CP017859.1_997446_998391_+	sd00045, ANK, ankyrin repeats	NA|569aa|up_3|NZ_CP017859.1_998383_1000090_+	pfam15649, Tox-REase-7, Restriction endonuclease fold toxin 7	NA|251aa|up_2|NZ_CP017859.1_1000177_1000930_+	sd00045, ANK, ankyrin repeats	NA|155aa|up_1|NZ_CP017859.1_1000975_1001440_+	NA	NA|417aa|up_0|NZ_CP017859.1_1001436_1002687_+	NA	NA|189aa|down_0|NZ_CP017859.1_1003518_1004085_+	NA	NA|117aa|down_1|NZ_CP017859.1_1004169_1004520_+	pfam14132, DUF4299, Domain of unknown function (DUF4299)	NA|211aa|down_2|NZ_CP017859.1_1004519_1005152_+	NA	NA|137aa|down_3|NZ_CP017859.1_1005295_1005706_+	NA	NA|664aa|down_4|NZ_CP017859.1_1005705_1007697_+	NA	NA|204aa|down_5|NZ_CP017859.1_1007698_1008310_+	NA	NA|148aa|down_6|NZ_CP017859.1_1008491_1008935_+	NA	NA|272aa|down_7|NZ_CP017859.1_1009019_1009835_+	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]	NA|847aa|down_8|NZ_CP017859.1_1009824_1012365_+	NA	NA|268aa|down_9|NZ_CP017859.1_1012380_1013184_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein
GCF_001870085.1_ASM187008v1	NZ_CP017859	Campylobacter jejuni strain YQ2210 chromosome, complete genome	3	1553130-1553242	3	CRISPRCasFinder	no	csa3	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	Type I-A	TAGTTTTCTTAACTTTGGTAGTATAAAACAAGAAAA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	NA|184aa|up_2|NZ_CP017859.1_1548922_1549474_+,NA|626aa|down_0|NZ_CP017859.1_1554208_1556086_+	NA|270aa|up_9|NZ_CP017859.1_1543562_1544372_+	COG2998, TupA, tungsten ABC transporter substrate-binding protein [Coenzyme metabolism]	NA|256aa|up_8|NZ_CP017859.1_1544513_1545281_+	COG1540, COG1540, Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]	NA|247aa|up_7|NZ_CP017859.1_1545290_1546031_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|322aa|up_6|NZ_CP017859.1_1546011_1546977_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|299aa|up_5|NZ_CP017859.1_1546973_1547870_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|193aa|up_4|NZ_CP017859.1_1547902_1548481_-	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|114aa|up_3|NZ_CP017859.1_1548580_1548922_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|184aa|up_2|NZ_CP017859.1_1548922_1549474_+	NA	NA|359aa|up_1|NZ_CP017859.1_1549476_1550553_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|770aa|up_0|NZ_CP017859.1_1550684_1552994_+	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|626aa|down_0|NZ_CP017859.1_1554208_1556086_+	NA	NA|412aa|down_1|NZ_CP017859.1_1556087_1557323_+	cd17526, RMtype1_S_Cje2232P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Campylobacter jejuni RM 2232 S subunit (S	NA|357aa|down_2|NZ_CP017859.1_1557383_1558454_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|134aa|down_3|NZ_CP017859.1_1559750_1560152_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|112aa|down_4|NZ_CP017859.1_1560321_1560657_-	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain	NA|318aa|down_5|NZ_CP017859.1_1562016_1562970_+	COG0701, COG0701, Predicted permeases [General function prediction only]	csa3|106aa|down_6|NZ_CP017859.1_1562979_1563297_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|141aa|down_7|NZ_CP017859.1_1563293_1563716_+	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|232aa|down_8|NZ_CP017859.1_1565151_1565847_+	cd12913, PDC1_MCP_like, first PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains	NA|789aa|down_9|NZ_CP017859.1_1569267_1571634_-	PRK15490, PRK15490, Vi polysaccharide biosynthesis glycosyltransferase TviE
GCF_001870085.1_ASM187008v1	NZ_CP017859	Campylobacter jejuni strain YQ2210 chromosome, complete genome	4	1568370-1568486	4	CRISPRCasFinder	no	csa3	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	Type I-A	TGTAGAATTAACTACTAATGCTTTAGGTGATGAAATAGTTAA	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	NA|257aa|up_9|NZ_CP017859.1_1553186_1553957_+,NA|626aa|up_8|NZ_CP017859.1_1554208_1556086_+,NA|231aa|down_9|NZ_CP017859.1_1581223_1581916_-	NA|257aa|up_9|NZ_CP017859.1_1553186_1553957_+	NA	NA|626aa|up_8|NZ_CP017859.1_1554208_1556086_+	NA	NA|412aa|up_7|NZ_CP017859.1_1556087_1557323_+	cd17526, RMtype1_S_Cje2232P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Campylobacter jejuni RM 2232 S subunit (S	NA|357aa|up_6|NZ_CP017859.1_1557383_1558454_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|134aa|up_5|NZ_CP017859.1_1559750_1560152_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|112aa|up_4|NZ_CP017859.1_1560321_1560657_-	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain	NA|318aa|up_3|NZ_CP017859.1_1562016_1562970_+	COG0701, COG0701, Predicted permeases [General function prediction only]	csa3|106aa|up_2|NZ_CP017859.1_1562979_1563297_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|141aa|up_1|NZ_CP017859.1_1563293_1563716_+	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|232aa|up_0|NZ_CP017859.1_1565151_1565847_+	cd12913, PDC1_MCP_like, first PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains	NA|789aa|down_0|NZ_CP017859.1_1569267_1571634_-	PRK15490, PRK15490, Vi polysaccharide biosynthesis glycosyltransferase TviE	NA|463aa|down_1|NZ_CP017859.1_1571655_1573044_-	COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]	NA|496aa|down_2|NZ_CP017859.1_1573033_1574521_-	TIGR01972, NADH-quinone_oxidoreductase_subunit_M, proton-translocating NADH-quinone oxidoreductase, chain M	NA|597aa|down_3|NZ_CP017859.1_1574522_1576313_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|99aa|down_4|NZ_CP017859.1_1576314_1576611_-	COG0713, NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]	NA|173aa|down_5|NZ_CP017859.1_1576607_1577126_-	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|214aa|down_6|NZ_CP017859.1_1577122_1577764_-	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|333aa|down_7|NZ_CP017859.1_1577773_1578772_-	PRK06076, PRK06076, NADH-quinone oxidoreductase subunit NuoH	NA|821aa|down_8|NZ_CP017859.1_1578764_1581227_-	PRK08493, PRK08493, NADH-quinone oxidoreductase subunit G	NA|231aa|down_9|NZ_CP017859.1_1581223_1581916_-	NA
GCF_001870085.1_ASM187008v1	NZ_CP017857	Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence	1	20842-20940	1	CRISPRCasFinder	no			Orphan	AAACTATTCTATTTATGTCAATTTT	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	NA|264aa|up_8|NZ_CP017857.1_12401_13193_+,NA|184aa|up_6|NZ_CP017857.1_14785_15337_-,NA|94aa|up_5|NZ_CP017857.1_15530_15812_+,NA|204aa|up_4|NZ_CP017857.1_15840_16452_+,NA|220aa|up_3|NZ_CP017857.1_16455_17115_+,NA|93aa|up_1|NZ_CP017857.1_18534_18813_+,NA|70aa|up_0|NZ_CP017857.1_18973_19183_-,NA|151aa|down_2|NZ_CP017857.1_23337_23790_-,NA|66aa|down_3|NZ_CP017857.1_23786_23984_-,NA|108aa|down_6|NZ_CP017857.1_25064_25388_-	NA|1938aa|up_9|NZ_CP017857.1_6561_12375_+	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair]	NA|264aa|up_8|NZ_CP017857.1_12401_13193_+	NA	NA|463aa|up_7|NZ_CP017857.1_13397_14786_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|184aa|up_6|NZ_CP017857.1_14785_15337_-	NA	NA|94aa|up_5|NZ_CP017857.1_15530_15812_+	NA	NA|204aa|up_4|NZ_CP017857.1_15840_16452_+	NA	NA|220aa|up_3|NZ_CP017857.1_16455_17115_+	NA	NA|410aa|up_2|NZ_CP017857.1_17197_18427_+	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown]	NA|93aa|up_1|NZ_CP017857.1_18534_18813_+	NA	NA|70aa|up_0|NZ_CP017857.1_18973_19183_-	NA	NA|73aa|down_0|NZ_CP017857.1_21231_21450_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|598aa|down_1|NZ_CP017857.1_21540_23334_+	pfam13481, AAA_25, AAA domain	NA|151aa|down_2|NZ_CP017857.1_23337_23790_-	NA	NA|66aa|down_3|NZ_CP017857.1_23786_23984_-	NA	NA|205aa|down_4|NZ_CP017857.1_24085_24700_-	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase	NA|126aa|down_5|NZ_CP017857.1_24696_25074_-	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown]	NA|108aa|down_6|NZ_CP017857.1_25064_25388_-	NA	NA|88aa|down_7|NZ_CP017857.1_25558_25822_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|923aa|down_8|NZ_CP017857.1_25840_28609_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|186aa|down_9|NZ_CP017857.1_28619_29177_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)
GCF_001870085.1_ASM187008v1	NZ_CP017857	Campylobacter jejuni strain YQ2210 plasmid pCJDM210L, complete sequence	2	21156-21221	2	CRISPRCasFinder	no			Orphan	AAACTATTCTATTTATGTCAATTTT	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas14j,cas2,cas1,cas9,csa3	NA|264aa|up_8|NZ_CP017857.1_12401_13193_+,NA|184aa|up_6|NZ_CP017857.1_14785_15337_-,NA|94aa|up_5|NZ_CP017857.1_15530_15812_+,NA|204aa|up_4|NZ_CP017857.1_15840_16452_+,NA|220aa|up_3|NZ_CP017857.1_16455_17115_+,NA|93aa|up_1|NZ_CP017857.1_18534_18813_+,NA|70aa|up_0|NZ_CP017857.1_18973_19183_-,NA|151aa|down_2|NZ_CP017857.1_23337_23790_-,NA|66aa|down_3|NZ_CP017857.1_23786_23984_-,NA|108aa|down_6|NZ_CP017857.1_25064_25388_-	NA|1938aa|up_9|NZ_CP017857.1_6561_12375_+	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair]	NA|264aa|up_8|NZ_CP017857.1_12401_13193_+	NA	NA|463aa|up_7|NZ_CP017857.1_13397_14786_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|184aa|up_6|NZ_CP017857.1_14785_15337_-	NA	NA|94aa|up_5|NZ_CP017857.1_15530_15812_+	NA	NA|204aa|up_4|NZ_CP017857.1_15840_16452_+	NA	NA|220aa|up_3|NZ_CP017857.1_16455_17115_+	NA	NA|410aa|up_2|NZ_CP017857.1_17197_18427_+	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown]	NA|93aa|up_1|NZ_CP017857.1_18534_18813_+	NA	NA|70aa|up_0|NZ_CP017857.1_18973_19183_-	NA	NA|73aa|down_0|NZ_CP017857.1_21231_21450_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|598aa|down_1|NZ_CP017857.1_21540_23334_+	pfam13481, AAA_25, AAA domain	NA|151aa|down_2|NZ_CP017857.1_23337_23790_-	NA	NA|66aa|down_3|NZ_CP017857.1_23786_23984_-	NA	NA|205aa|down_4|NZ_CP017857.1_24085_24700_-	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase	NA|126aa|down_5|NZ_CP017857.1_24696_25074_-	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown]	NA|108aa|down_6|NZ_CP017857.1_25064_25388_-	NA	NA|88aa|down_7|NZ_CP017857.1_25558_25822_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|923aa|down_8|NZ_CP017857.1_25840_28609_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|186aa|down_9|NZ_CP017857.1_28619_29177_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)
