The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013475	Mycobacterium tuberculosis strain 1458, complete genome	4402033	2924255	2962528	4402033	head,terminase,integrase,protease,tRNA,capsid	Mycobacterium_phage(30.0%)	48	2953057:2953084	2962681:2962708
WP_003413486.1|2924255_2926334_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2926442_2926670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009940032.1|2926666_2928052_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2928396_2928897_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2928913_2929354_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2929500_2930178_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2930162_2930516_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2930528_2930954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2930950_2931625_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2931702_2932524_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2932659_2933553_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2933555_2934374_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2934388_2935570_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2935628_2936060_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2936573_2937815_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2938124_2938487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2938833_2939958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003913785.1|2940107_2940500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2940639_2941938_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2941976_2942258_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2942402_2942888_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2942914_2943172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2943172_2945509_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2945537_2945780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2945780_2946458_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2946653_2947310_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2947472_2947919_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2948093_2948426_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2948545_2948905_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2949006_2949465_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2949600_2949981_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2949977_2951474_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2951663_2951900_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2951972_2952146_+	hypothetical protein	NA	NA	NA	NA	NA
2953057:2953084	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2953190_2953622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2953618_2954617_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2954630_2955095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003908028.1|2955082_2955334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003901443.1|2955504_2956944_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2956951_2957485_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2957637_2958264_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2958295_2958619_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2958698_2958944_-	antitoxin	NA	NA	NA	NA	NA
WP_003899416.1|2958940_2960368_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2960369_2960762_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2960758_2961019_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2961035_2961398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2961400_2962528_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2962681:2962708	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP013475	Mycobacterium tuberculosis strain 1458, complete genome	4402033	3695246	3783041	4402033	tRNA,transposase	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3695246_3696508_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3696801_3696963_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3696984_3698514_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3698446_3699385_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3699393_3700761_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3700829_3702047_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3702142_3703651_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3703647_3704799_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3704989_3705835_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3706309_3706750_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3706783_3707653_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3707673_3708684_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3708968_3709601_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3709667_3710897_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3711179_3712529_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3712540_3713680_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3713676_3714408_+	methyltransferase	NA	NA	NA	NA	NA
WP_079157050.1|3714416_3722030_-	PPE family protein	NA	NA	NA	NA	NA
WP_153302081.1|3722078_3728018_-	PE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3728447_3728705_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003901612.1|3728960_3738434_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3739059_3739506_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_016810328.1|3739542_3740361_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3740577_3740865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417738.1|3752594_3753389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3753470_3753842_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_071854233.1|3753739_3754150_-	FAD-binding protein	NA	NA	NA	NA	NA
WP_003417741.1|3753984_3754245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3754359_3754749_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3754762_3755056_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3755052_3755898_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3756021_3756297_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3756293_3756551_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3756592_3757783_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3757899_3758268_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3758264_3758816_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3758822_3759404_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3759384_3759753_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3759730_3760123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901616.1|3760119_3762750_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003901617.1|3762985_3763450_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3763816_3765592_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3765592_3766237_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3766235_3766670_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3766758_3769998_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3770189_3771530_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3771571_3772747_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3772800_3772905_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3772983_3773625_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3773625_3773874_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3773878_3775306_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3775413_3776067_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3776105_3777611_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3777615_3778506_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003918607.1|3778514_3780353_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003417912.1|3780349_3781339_-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_087902221.1|3781780_3783041_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
