assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001854325.1_ASM185432v1	NZ_CP017755	Cupriavidus malaysiensis strain USMAA1020 isolate pure chromosome 2, complete sequence	1	1107498-1107594	1	CRISPRCasFinder	no		cas4,DEDDh,csa3	Orphan	GCCGCAGTGCAGGGCGCCGCGCGCG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,RT,DinG,DEDDh,cas4	NA|57aa|up_5|NZ_CP017755.1_1101915_1102086_+,NA|198aa|up_0|NZ_CP017755.1_1106460_1107054_-,NA|48aa|down_0|NZ_CP017755.1_1108311_1108455_-,NA|68aa|down_5|NZ_CP017755.1_1113719_1113923_-	NA|323aa|up_9|NZ_CP017755.1_1096629_1097598_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|506aa|up_8|NZ_CP017755.1_1097705_1099223_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|194aa|up_7|NZ_CP017755.1_1099350_1099932_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|461aa|up_6|NZ_CP017755.1_1100100_1101483_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|57aa|up_5|NZ_CP017755.1_1101915_1102086_+	NA	NA|288aa|up_4|NZ_CP017755.1_1102177_1103041_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|453aa|up_3|NZ_CP017755.1_1103334_1104693_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|295aa|up_2|NZ_CP017755.1_1104727_1105612_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|170aa|up_1|NZ_CP017755.1_1105814_1106324_+	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|198aa|up_0|NZ_CP017755.1_1106460_1107054_-	NA	NA|48aa|down_0|NZ_CP017755.1_1108311_1108455_-	NA	NA|388aa|down_1|NZ_CP017755.1_1108821_1109985_+	pfam15902, Sortilin-Vps10, Sortilin, neurotensin receptor 3,	NA|87aa|down_2|NZ_CP017755.1_1110026_1110287_+	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins	NA|323aa|down_3|NZ_CP017755.1_1110476_1111445_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|550aa|down_4|NZ_CP017755.1_1112015_1113665_+	PRK11660, PRK11660, putative transporter; Provisional	NA|68aa|down_5|NZ_CP017755.1_1113719_1113923_-	NA	NA|369aa|down_6|NZ_CP017755.1_1114794_1115901_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|326aa|down_7|NZ_CP017755.1_1115980_1116958_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|361aa|down_8|NZ_CP017755.1_1117067_1118150_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|128aa|down_9|NZ_CP017755.1_1118852_1119236_-	pfam05300, DUF737, Protein of unknown function (DUF737)
GCF_001854325.1_ASM185432v1	NZ_CP017755	Cupriavidus malaysiensis strain USMAA1020 isolate pure chromosome 2, complete sequence	2	1671495-1671602	2	CRISPRCasFinder	no		cas4,DEDDh,csa3	Orphan	GCGCTTTGCTCCTGGCCTCGCACGTC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,RT,DinG,DEDDh,cas4	NA|77aa|up_3|NZ_CP017755.1_1667853_1668084_+,NA|223aa|down_8|NZ_CP017755.1_1681921_1682590_+	NA|321aa|up_9|NZ_CP017755.1_1658454_1659417_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|537aa|up_8|NZ_CP017755.1_1659444_1661055_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|407aa|up_7|NZ_CP017755.1_1661072_1662293_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1076aa|up_6|NZ_CP017755.1_1662289_1665517_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|225aa|up_5|NZ_CP017755.1_1665761_1666436_+	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator	NA|475aa|up_4|NZ_CP017755.1_1666432_1667857_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|77aa|up_3|NZ_CP017755.1_1667853_1668084_+	NA	NA|315aa|up_2|NZ_CP017755.1_1668114_1669059_-	PRK12921, PRK12921, oxidoreductase	NA|453aa|up_1|NZ_CP017755.1_1669096_1670455_-	cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|165aa|up_0|NZ_CP017755.1_1670819_1671314_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|262aa|down_0|NZ_CP017755.1_1671637_1672423_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|397aa|down_1|NZ_CP017755.1_1672419_1673610_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|285aa|down_2|NZ_CP017755.1_1673581_1674436_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|358aa|down_3|NZ_CP017755.1_1674432_1675506_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|187aa|down_4|NZ_CP017755.1_1675525_1676086_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|312aa|down_5|NZ_CP017755.1_1676178_1677114_-	pfam12852, Cupin_6, Cupin	NA|782aa|down_6|NZ_CP017755.1_1677809_1680155_+	pfam04185, Phosphoesterase, Phosphoesterase family	NA|479aa|down_7|NZ_CP017755.1_1680416_1681853_+	COG1858, MauG, Cytochrome c peroxidase [Inorganic ion transport and metabolism]	NA|223aa|down_8|NZ_CP017755.1_1681921_1682590_+	NA	NA|299aa|down_9|NZ_CP017755.1_1682677_1683574_-	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional
GCF_001854325.1_ASM185432v1	NZ_CP017755	Cupriavidus malaysiensis strain USMAA1020 isolate pure chromosome 2, complete sequence	3	1804949-1805051	3	CRISPRCasFinder	no		cas4,DEDDh,csa3	Orphan	AGTTCGACCCCTACAGCCAGGGTGC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,RT,DinG,DEDDh,cas4	NA,NA	NA|662aa|up_9|NZ_CP017755.1_1788759_1790745_-	pfam04632, FUSC, Fusaric acid resistance protein family	NA|159aa|up_8|NZ_CP017755.1_1790749_1791226_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|416aa|up_7|NZ_CP017755.1_1791451_1792699_-	COG3174, COG3174, Predicted membrane protein [Function unknown]	NA|518aa|up_6|NZ_CP017755.1_1792885_1794439_+	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown]	NA|327aa|up_5|NZ_CP017755.1_1794679_1795660_+	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional	NA|929aa|up_4|NZ_CP017755.1_1795663_1798450_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|376aa|up_3|NZ_CP017755.1_1798452_1799580_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|458aa|up_2|NZ_CP017755.1_1799744_1801118_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|690aa|up_1|NZ_CP017755.1_1801296_1803366_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|308aa|up_0|NZ_CP017755.1_1803718_1804642_+	cd13688, PBP2_GltI_DEBP, Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold	NA|569aa|down_0|NZ_CP017755.1_1805259_1806966_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|190aa|down_1|NZ_CP017755.1_1808283_1808853_+	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|582aa|down_2|NZ_CP017755.1_1809163_1810909_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|124aa|down_3|NZ_CP017755.1_1810916_1811288_+	PRK02971, PRK02971, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional	NA|395aa|down_4|NZ_CP017755.1_1811300_1812485_+	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|334aa|down_5|NZ_CP017755.1_1812463_1813465_+	PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional	NA|315aa|down_6|NZ_CP017755.1_1813452_1814397_+	PRK06988, PRK06988, formyltransferase	NA|351aa|down_7|NZ_CP017755.1_1814393_1815446_+	PRK11908, PRK11908, bifunctional UDP-4-keto-pentose/UDP-xylose synthase	NA|297aa|down_8|NZ_CP017755.1_1815457_1816348_+	cd10939, CE4_ArnD, Catalytic domain of Escherichia coli 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD and other bacterial homologs	NA|151aa|down_9|NZ_CP017755.1_1816411_1816864_+	pfam16986, CzcE, Heavy-metal resistance protein CzcE
