The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017748	Cupriavidus sp. USMAA2-4 chromosome 1, complete sequence	4493942	168408	175451	4493942		Vibrio_phage(50.0%)	9	NA	NA
WP_071036850.1|168408_169038_+	DUF2829 domain-containing protein	NA	A0A2I7R7I1	Vibrio_phage	53.7	6.0e-17
WP_084084375.1|169041_169719_+	transglycosylase SLT domain-containing protein	NA	A0A0S4L2W4	Pseudomonas_phage	46.9	1.7e-38
WP_071036852.1|169712_170039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071036853.1|170234_170591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157128329.1|170622_171276_+	hypothetical protein	NA	A0A2K8HN72	Pseudomonas_phage	48.2	4.1e-29
WP_071036855.1|171235_172021_+	hypothetical protein	NA	F8TUP1	EBPR_podovirus	53.5	6.6e-66
WP_084084377.1|172024_172567_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_071036856.1|172587_173340_+	hypothetical protein	NA	A0A076G6J2	Vibrio_phage	51.3	1.3e-63
WP_071036857.1|173372_175451_+	hypothetical protein	NA	M4MB09	Vibrio_phage	39.4	3.7e-124
>prophage 2
NZ_CP017748	Cupriavidus sp. USMAA2-4 chromosome 1, complete sequence	4493942	444527	478656	4493942	transposase	Erwinia_phage(25.0%)	26	NA	NA
WP_071036964.1|444527_445904_+|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_071036965.1|447059_447593_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_071036966.1|447647_448475_-	TonB family protein	NA	NA	NA	NA	NA
WP_157128348.1|448844_449336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_084084414.1|449482_450073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157128350.1|450484_451006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084084416.1|451002_451656_-	DUF2778 domain-containing protein	NA	A0A1S6L3A5	Erwinia_phage	42.5	4.4e-15
WP_084084418.1|452208_457680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157128352.1|457679_460058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071036968.1|460699_461314_+	lytic transglycosylase domain-containing protein	NA	A0A1P8CWQ1	Bacillus_phage	46.7	3.2e-23
WP_071036969.1|461315_461795_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA	NA
WP_071036970.1|461813_463004_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_084084420.1|463000_463618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157128356.1|463606_464418_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_157128358.1|465542_466904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071036973.1|466900_467254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004633552.1|467306_467678_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_004633551.1|467719_468010_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_009238807.1|468072_469602_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	46.1	1.4e-115
WP_071036974.1|469623_469914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085960481.1|470499_471685_+|transposase	IS3-like element ISRme13 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.7	3.2e-56
WP_157128359.1|471831_474147_+	general secretion pathway protein GspD	NA	NA	NA	NA	NA
WP_071036976.1|474150_474651_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_071036977.1|474659_475061_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_084084428.1|475656_476793_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_011517431.1|477447_478656_+|transposase	IS4-like element ISBvi1 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017748	Cupriavidus sp. USMAA2-4 chromosome 1, complete sequence	4493942	1281551	1290500	4493942		Tupanvirus(16.67%)	8	NA	NA
WP_071011660.1|1281551_1282475_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	33.2	1.1e-38
WP_071011658.1|1282610_1283717_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_071011657.1|1283841_1284744_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	40.5	2.5e-53
WP_071011655.1|1284829_1286134_-	pyrimidine utilization transport protein G	NA	Q9KX94	Enterobacteria_phage	64.9	2.8e-146
WP_071011654.1|1286528_1286873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071011652.1|1287037_1288030_-	ADP-glyceromanno-heptose 6-epimerase	NA	R9S880	Prochlorococcus_phage	33.1	1.2e-27
WP_071011651.1|1288095_1289043_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	26.4	1.3e-12
WP_071011649.1|1289114_1290500_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	36.2	4.9e-72
>prophage 4
NZ_CP017748	Cupriavidus sp. USMAA2-4 chromosome 1, complete sequence	4493942	3499606	3560496	4493942	transposase,tRNA,integrase	Bacillus_phage(16.67%)	53	3492242:3492258	3565133:3565149
3492242:3492258	attL	CATCGTGCTGGCCCTGG	NA	NA	NA	NA
WP_071014835.1|3499606_3500383_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_071037997.1|3500694_3501336_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_071037998.1|3501457_3501763_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_071037999.1|3501800_3502691_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_071038000.1|3502969_3503884_+	WYL domain-containing transcriptional regulator	NA	NA	NA	NA	NA
WP_084084737.1|3503888_3504362_+	BREX-3 system P-loop-containing protein BrxF	NA	NA	NA	NA	NA
WP_071038552.1|3504409_3508138_+	ATPase	NA	NA	NA	NA	NA
WP_071038001.1|3508149_3509328_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_071038553.1|3509321_3509951_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_071038002.1|3510073_3511963_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_071038003.1|3511959_3513324_+	hypothetical protein	NA	Q858S9	Enterobacteria_phage	27.9	5.3e-18
WP_016495558.1|3513696_3515229_+|transposase	IS21-like element ISAav1 family transposase	transposase	NA	NA	NA	NA
WP_016495557.1|3515218_3516061_+	ATPase AAA	NA	A0A059NT77	Lactococcus_phage	34.7	2.0e-31
WP_003049965.1|3516796_3519712_+|transposase	Tn3-like element IS1071 family transposase	transposase	NA	NA	NA	NA
WP_077260283.1|3519876_3520095_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	70.1	8.9e-21
WP_071038006.1|3520443_3523098_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.2	5.6e-157
WP_071038007.1|3523142_3524456_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.2	3.0e-79
WP_084084741.1|3524587_3525361_-	zinc permease	NA	NA	NA	NA	NA
WP_084084743.1|3525574_3526894_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_071038009.1|3526912_3527743_-	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_071038010.1|3527798_3529130_-	DUF3422 domain-containing protein	NA	NA	NA	NA	NA
WP_046462314.1|3529302_3529701_-	VOC family protein	NA	NA	NA	NA	NA
WP_043387381.1|3529752_3530862_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	31.4	2.9e-35
WP_043387383.1|3531145_3532051_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_071038011.1|3532212_3534189_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_034390491.1|3534735_3535962_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	48.7	2.1e-50
WP_157128428.1|3535954_3536266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038012.1|3536516_3537161_-	resolvase	NA	NA	NA	NA	NA
WP_157128429.1|3537459_3537819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038013.1|3537802_3538108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005798840.1|3538309_3538744_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005798838.1|3538815_3539166_+	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_004178136.1|3539179_3539455_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_000522996.1|3539482_3539908_+	organomercurial transporter MerC	NA	NA	NA	NA	NA
WP_071038014.1|3539946_3541632_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.8	9.3e-41
WP_000995361.1|3541649_3542015_+	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_005413392.1|3542011_3542248_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_010981356.1|3542263_3542584_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_005797799.1|3543180_3544143_+	chromate resistance protein	NA	NA	NA	NA	NA
WP_071038016.1|3544199_3545396_+	chromate transporter	NA	NA	NA	NA	NA
WP_005797796.1|3545457_3546366_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	35.5	1.0e-09
WP_005797792.1|3546370_3546829_+	chromate resistance protein	NA	NA	NA	NA	NA
WP_005797790.1|3546844_3547234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005797786.1|3547306_3548209_+	DUF1259 domain-containing protein	NA	NA	NA	NA	NA
WP_013722012.1|3548268_3548628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038017.1|3548674_3550501_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	1.0e-24
WP_059441849.1|3550497_3552300_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.3	5.9e-33
WP_005797778.1|3552315_3553386_+	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA	NA
WP_005800234.1|3553905_3555429_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_005800232.1|3555418_3556228_+	ATPase AAA	NA	A0A2L1IVB6	Escherichia_phage	36.6	1.3e-29
WP_009288528.1|3556652_3557870_-	TniQ family protein	NA	NA	NA	NA	NA
WP_011494285.1|3557866_3558775_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_013741669.1|3558777_3560496_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
3565133:3565149	attR	CCAGGGCCAGCACGATG	NA	NA	NA	NA
>prophage 5
NZ_CP017748	Cupriavidus sp. USMAA2-4 chromosome 1, complete sequence	4493942	4429002	4478717	4493942	plate,coat,integrase,tail,terminase	Pseudomonas_phage(25.81%)	65	4426075:4426091	4437830:4437846
4426075:4426091	attL	CCAGTCGGCCGCCTTCA	NA	NA	NA	NA
WP_071038305.1|4429002_4430241_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	45.6	2.0e-85
WP_071038306.1|4430233_4430944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038307.1|4430996_4431569_-	DUF1643 domain-containing protein	NA	A0A142F2K6	Mycobacterium_phage	41.6	7.1e-25
WP_071038309.1|4431765_4432413_-	hypothetical protein	NA	A0A0U1SZL2	Pseudomonas_phage	45.4	1.5e-39
WP_071038310.1|4432417_4433638_-	phosphoadenosine phosphosulfate reductase family protein	NA	R9TRT5	Rhizobium_phage	70.8	2.3e-174
WP_071038311.1|4434613_4435456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038312.1|4435452_4435725_-	hypothetical protein	NA	B1GS76	Salmonella_phage	41.4	5.0e-05
WP_071038595.1|4435721_4435973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038314.1|4435975_4436290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038315.1|4436289_4436493_-	AlpA family transcriptional regulator	NA	B7SYF9	Stenotrophomonas_phage	51.8	5.6e-09
WP_071038316.1|4436489_4436672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038317.1|4436671_4438411_-	AAA family ATPase	NA	H2BD46	Pseudomonas_phage	38.3	5.4e-76
4437830:4437846	attR	CCAGTCGGCCGCCTTCA	NA	NA	NA	NA
WP_071038318.1|4438407_4439088_-	hypothetical protein	NA	J7I0T4	Pseudomonas_phage	40.2	1.3e-09
WP_071038319.1|4439099_4440179_-	hypothetical protein	NA	H2BD49	Pseudomonas_phage	55.7	5.2e-77
WP_157128446.1|4440175_4440667_-	hypothetical protein	NA	I2GUC6	Acinetobacter_phage	46.2	6.3e-30
WP_071038321.1|4440674_4441469_-	nuclease	NA	J7HXJ4	Pseudomonas_phage	47.6	9.7e-57
WP_071038322.1|4441744_4442038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038323.1|4442034_4442370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038324.1|4442373_4442685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038325.1|4442697_4443009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038326.1|4443257_4443758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084084816.1|4443802_4444687_-	hypothetical protein	NA	A0A0P0ZE37	Stx2-converting_phage	34.1	1.6e-31
WP_071038328.1|4444667_4444931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038329.1|4444930_4445167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038330.1|4445480_4445792_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_071038331.1|4445788_4446106_+	DUF4406 domain-containing protein	NA	L7TKQ2	Pseudomonas_virus	55.8	1.1e-24
WP_157128447.1|4446557_4447322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038333.1|4447359_4447806_+	hypothetical protein	NA	Q6JIG5	Burkholderia_virus	71.1	6.2e-53
WP_071038334.1|4447802_4448801_+	YdaU family protein	NA	A0A0P0I481	Acinetobacter_phage	44.4	6.3e-21
WP_157128448.1|4448797_4448998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038335.1|4448994_4449462_+	RusA family crossover junction endodeoxyribonuclease	NA	A9YWY9	Burkholderia_phage	60.1	1.1e-44
WP_157128449.1|4449498_4450194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157128450.1|4450302_4450851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038337.1|4451110_4452490_+	chromosome partitioning protein ParB	NA	A0A1P8VV91	Erythrobacter_phage	31.1	1.2e-81
WP_071038338.1|4452565_4452916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038339.1|4452908_4454192_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	66.9	5.2e-161
WP_071038340.1|4454206_4455610_+	DUF4055 domain-containing protein	NA	A0A0H5AWC7	Pseudomonas_phage	46.4	4.0e-98
WP_071038341.1|4455751_4456528_+	hypothetical protein	NA	A0A0S2SY92	Pseudomonas_phage	54.3	2.2e-53
WP_084084933.1|4456740_4457880_+|coat	P22 coat - protein 5 family protein	coat	W6EBZ8	Rhizobium_phage	52.7	2.5e-98
WP_071038343.1|4457932_4458154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038344.1|4458153_4458549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038345.1|4458552_4459203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038346.1|4459203_4460034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038347.1|4460247_4461771_+	hypothetical protein	NA	B3GAJ6	uncultured_virus	40.3	5.4e-80
WP_071038348.1|4461825_4462257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038349.1|4462259_4462625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038350.1|4462794_4463268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038351.1|4463516_4465454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038352.1|4465463_4466432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038353.1|4466439_4467561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_084084935.1|4467581_4468232_+|plate	phage baseplate assembly protein V	plate	B3GAJ7	uncultured_virus	34.2	3.0e-11
WP_084084820.1|4468228_4468609_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_071038355.1|4468610_4469750_+|plate	baseplate protein	plate	B3GAJ9	uncultured_virus	46.1	1.6e-60
WP_157128484.1|4470536_4470776_+	hypothetical protein	NA	I3UM19	Rhodobacter_phage	42.3	6.8e-06
WP_071038357.1|4470772_4470982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038358.1|4470985_4472146_+	hypothetical protein	NA	A0A0E3HGL3	Synechococcus_phage	28.8	1.5e-18
WP_071036648.1|4472142_4472475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157128451.1|4472523_4473363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157128309.1|4473492_4475229_+|tail	phage tail protein	tail	A9YX14	Burkholderia_phage	40.8	1.2e-56
WP_071036650.1|4475282_4475465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071036652.1|4475550_4475997_+	hypothetical protein	NA	A0A0U5LBV3	unidentified_phage	55.7	8.2e-29
WP_071036654.1|4475986_4476469_+	glycoside hydrolase family 104 protein	NA	Q6J1Q5	Burkholderia_virus	62.8	4.0e-45
WP_071036656.1|4476465_4476801_+	ammonia monooxygenase	NA	A0A291AUV3	Sinorhizobium_phage	49.6	5.2e-28
WP_071036661.1|4476872_4477259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071036662.1|4477274_4478717_+	hypothetical protein	NA	A0A0B4ZZU0	Achromobacter_phage	35.9	2.4e-61
>prophage 1
NZ_CP017749	Cupriavidus sp. USMAA2-4 chromosome 2, complete sequence	3659407	6006	18507	3659407	integrase	Pseudomonas_phage(36.36%)	17	5244:5259	22887:22902
5244:5259	attL	ATGGCCGCCGCGCCGG	NA	NA	NA	NA
WP_071038588.1|6006_6801_+	nuclease	NA	J7HXJ4	Pseudomonas_phage	46.8	9.1e-55
WP_071040255.1|6830_8021_+	hypothetical protein	NA	J7HXB6	Pseudomonas_phage	51.5	1.9e-64
WP_071038589.1|8135_9038_+	hypothetical protein	NA	I6XKU1	Burkholderia_virus	52.2	1.9e-93
WP_157128487.1|9110_10001_+	cell division protein FtsK	NA	A0A1Y0SUG1	Pseudomonas_phage	58.3	6.9e-11
WP_071038591.1|10008_11748_+	AAA family ATPase	NA	H2BD46	Pseudomonas_phage	36.6	5.4e-76
WP_071038592.1|11747_11930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038593.1|11926_12130_+	AlpA family phage regulatory protein	NA	B7SYF9	Stenotrophomonas_phage	53.6	4.3e-09
WP_071038594.1|12129_12444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038595.1|12446_12698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038596.1|12694_12967_+	hypothetical protein	NA	B1GS76	Salmonella_phage	38.6	6.6e-05
WP_071038597.1|12977_13352_-	TonB family protein	NA	NA	NA	NA	NA
WP_071038598.1|13415_15287_+	DNA cytosine methyltransferase	NA	Q9ZXI4	Pseudomonas_virus	62.0	6.7e-173
WP_071038599.1|15289_15814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038600.1|15812_16457_+	hypothetical protein	NA	H2BDG4	Pseudomonas_virus	44.4	3.8e-43
WP_071038601.1|16459_16732_-	DUF1488 family protein	NA	NA	NA	NA	NA
WP_071038602.1|16764_17289_+	DUF1643 domain-containing protein	NA	A0A142F2K6	Mycobacterium_phage	42.5	3.5e-23
WP_071038603.1|17514_18507_+|integrase	site-specific integrase	integrase	A0A088CD23	Shigella_phage	22.3	2.8e-05
22887:22902	attR	ATGGCCGCCGCGCCGG	NA	NA	NA	NA
>prophage 2
NZ_CP017749	Cupriavidus sp. USMAA2-4 chromosome 2, complete sequence	3659407	3579477	3618469	3659407	head,terminase,tail	Burkholderia_phage(50.0%)	52	NA	NA
WP_071040197.1|3579477_3581445_+	selenocysteine-specific translation elongation factor	NA	A0A2K9L516	Tupanvirus	27.7	1.0e-14
WP_071040198.1|3581730_3582102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040577.1|3582098_3582452_-	DUF1353 domain-containing protein	NA	A0A1L2CVI8	Pectobacterium_phage	47.8	5.3e-15
WP_071040199.1|3582475_3582940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040200.1|3582991_3583192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040201.1|3583188_3583539_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_071040202.1|3583600_3585043_-	hypothetical protein	NA	A0A0B4ZZU0	Achromobacter_phage	35.1	3.0e-56
WP_071040203.1|3585058_3585445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040204.1|3585504_3586002_-	lysozyme	NA	Q3HQU9	Burkholderia_phage	43.8	5.5e-26
WP_071040205.1|3585998_3586430_-	hypothetical protein	NA	A0A0U5LBV3	unidentified_phage	55.7	6.1e-29
WP_071040206.1|3586514_3586697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040578.1|3586706_3587414_-|tail	phage tail protein	tail	A9YX14	Burkholderia_phage	57.9	8.4e-60
WP_071040207.1|3588142_3588802_-	DUF2612 domain-containing protein	NA	A9YX13	Burkholderia_phage	58.2	4.0e-72
WP_071040208.1|3588803_3589985_-	hypothetical protein	NA	A9YX12	Burkholderia_phage	62.3	6.2e-124
WP_071040209.1|3589984_3590335_-	hypothetical protein	NA	A9YX11	Burkholderia_phage	71.8	5.2e-39
WP_071040210.1|3590343_3591069_-	hypothetical protein	NA	A9YX06	Burkholderia_phage	62.4	7.7e-77
WP_071040211.1|3591081_3591462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040212.1|3591458_3592439_-	hypothetical protein	NA	A9YX04	Burkholderia_phage	62.4	3.8e-95
WP_071040579.1|3592800_3593262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040213.1|3593270_3593840_-	hypothetical protein	NA	A0A2H4YEU5	Salmonella_virus	43.1	1.9e-38
WP_157128606.1|3594003_3594171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084085590.1|3594340_3594508_-	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_084085592.1|3594604_3594880_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_084085594.1|3594935_3595379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040215.1|3595375_3595687_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	42.2	1.2e-15
WP_071040216.1|3595683_3596268_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	36.8	4.8e-21
WP_071040217.1|3596264_3598019_-	hypothetical protein	NA	A0A0P0IE11	Acinetobacter_phage	36.8	9.4e-28
WP_071040218.1|3598121_3598640_-	hypothetical protein	NA	A0A2H4J2V6	uncultured_Caudovirales_phage	37.4	5.1e-14
WP_071040219.1|3598642_3599083_-	DUF3277 family protein	NA	A0A0M5M1K6	Salmonella_phage	54.8	1.3e-39
WP_071040220.1|3599091_3600909_-	DUF3383 domain-containing protein	NA	A0A0P0I492	Acinetobacter_phage	43.3	6.3e-59
WP_071040221.1|3600970_3601552_-	hypothetical protein	NA	A9YX29	Burkholderia_phage	62.5	2.7e-64
WP_071040222.1|3601555_3601927_-	hypothetical protein	NA	A9YX28	Burkholderia_phage	53.7	8.9e-29
WP_157128607.1|3601933_3602092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157128608.1|3602088_3602901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040224.1|3602897_3603257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040225.1|3603398_3603932_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	52.0	2.3e-38
WP_071040226.1|3603928_3604312_-	DUF4054 domain-containing protein	NA	A9YX25	Burkholderia_phage	67.5	1.9e-42
WP_071040227.1|3604351_3604813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040228.1|3604814_3605903_-	DUF2184 domain-containing protein	NA	A9YX23	Burkholderia_phage	83.4	5.3e-146
WP_071040229.1|3605971_3606478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084085598.1|3606487_3607927_-	DUF2213 domain-containing protein	NA	A9YX03	Burkholderia_phage	63.8	1.6e-129
WP_084085716.1|3608093_3608441_-	hypothetical protein	NA	A9YX01	Burkholderia_phage	56.5	6.2e-32
WP_071040232.1|3608619_3609357_-|head	phage head morphogenesis protein	head	A9YWZ8	Burkholderia_phage	56.6	7.9e-69
WP_071040233.1|3609353_3610799_-	DUF1073 domain-containing protein	NA	A9YWZ7	Burkholderia_phage	70.2	3.9e-197
WP_071040234.1|3610820_3612371_-|terminase	phage terminase large subunit	terminase	H9C0C7	Vibrio_phage	44.9	3.2e-112
WP_071040235.1|3612321_3612732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040236.1|3612945_3613308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040237.1|3613336_3614716_-	chromosome partitioning protein ParB	NA	A0A1P8VV91	Erythrobacter_phage	30.5	2.2e-80
WP_157128609.1|3614982_3615678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040239.1|3615714_3616185_-	RusA family crossover junction endodeoxyribonuclease	NA	A9YWY9	Burkholderia_phage	59.6	3.9e-45
WP_084085718.1|3616181_3617447_-	DUF1376 domain-containing protein	NA	H2BD69	Pseudomonas_phage	59.8	9.8e-35
WP_071040241.1|3617503_3618469_-	site-specific DNA-methyltransferase	NA	Q8W6P4	Burkholderia_virus	58.7	4.6e-117
>prophage 3
NZ_CP017749	Cupriavidus sp. USMAA2-4 chromosome 2, complete sequence	3659407	3626829	3651822	3659407	integrase,tail	Burkholderia_phage(31.82%)	36	3623291:3623304	3639728:3639741
3623291:3623304	attL	CGCCTCCCCCGCCA	NA	NA	NA	NA
WP_071038588.1|3626829_3627624_+	nuclease	NA	J7HXJ4	Pseudomonas_phage	46.8	9.1e-55
WP_071040255.1|3627653_3628844_+	hypothetical protein	NA	J7HXB6	Pseudomonas_phage	51.5	1.9e-64
WP_071038589.1|3628958_3629861_+	hypothetical protein	NA	I6XKU1	Burkholderia_virus	52.2	1.9e-93
WP_157128487.1|3629933_3630824_+	cell division protein FtsK	NA	A0A1Y0SUG1	Pseudomonas_phage	58.3	6.9e-11
WP_071038591.1|3630831_3632571_+	AAA family ATPase	NA	H2BD46	Pseudomonas_phage	36.6	5.4e-76
WP_071038592.1|3632570_3632753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038593.1|3632749_3632953_+	AlpA family phage regulatory protein	NA	B7SYF9	Stenotrophomonas_phage	53.6	4.3e-09
WP_071038594.1|3632952_3633267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038595.1|3633269_3633521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071038596.1|3633517_3633790_+	hypothetical protein	NA	B1GS76	Salmonella_phage	38.6	6.6e-05
WP_071038597.1|3633800_3634175_-	TonB family protein	NA	NA	NA	NA	NA
WP_071038598.1|3634238_3636110_+	DNA cytosine methyltransferase	NA	Q9ZXI4	Pseudomonas_virus	62.0	6.7e-173
WP_071038599.1|3636112_3636637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071038600.1|3636635_3637280_+	hypothetical protein	NA	H2BDG4	Pseudomonas_virus	44.4	3.8e-43
WP_071038601.1|3637282_3637555_-	DUF1488 family protein	NA	NA	NA	NA	NA
WP_071038602.1|3637587_3638112_+	DUF1643 domain-containing protein	NA	A0A142F2K6	Mycobacterium_phage	42.5	3.5e-23
WP_071038603.1|3638337_3639330_+|integrase	site-specific integrase	integrase	A0A088CD23	Shigella_phage	22.3	2.8e-05
WP_071040198.1|3639711_3640083_+	hypothetical protein	NA	NA	NA	NA	NA
3639728:3639741	attR	CGCCTCCCCCGCCA	NA	NA	NA	NA
WP_071040577.1|3640079_3640433_-	DUF1353 domain-containing protein	NA	A0A1L2CVI8	Pectobacterium_phage	47.8	5.3e-15
WP_071040199.1|3640456_3640921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040200.1|3640972_3641173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040201.1|3641169_3641520_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_071040202.1|3641581_3643024_-	hypothetical protein	NA	A0A0B4ZZU0	Achromobacter_phage	35.1	3.0e-56
WP_071040203.1|3643039_3643426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040204.1|3643485_3643983_-	lysozyme	NA	Q3HQU9	Burkholderia_phage	43.8	5.5e-26
WP_071040205.1|3643979_3644411_-	hypothetical protein	NA	A0A0U5LBV3	unidentified_phage	55.7	6.1e-29
WP_071040206.1|3644495_3644678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040578.1|3644687_3645395_-|tail	phage tail protein	tail	A9YX14	Burkholderia_phage	57.9	8.4e-60
WP_071040207.1|3646123_3646783_-	DUF2612 domain-containing protein	NA	A9YX13	Burkholderia_phage	58.2	4.0e-72
WP_071040208.1|3646784_3647966_-	hypothetical protein	NA	A9YX12	Burkholderia_phage	62.3	6.2e-124
WP_071040209.1|3647965_3648316_-	hypothetical protein	NA	A9YX11	Burkholderia_phage	71.8	5.2e-39
WP_071040210.1|3648324_3649050_-	hypothetical protein	NA	A9YX06	Burkholderia_phage	62.4	7.7e-77
WP_071040211.1|3649062_3649443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040212.1|3649439_3650420_-	hypothetical protein	NA	A9YX04	Burkholderia_phage	62.4	3.8e-95
WP_071040579.1|3650782_3651244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040213.1|3651252_3651822_-	hypothetical protein	NA	A0A2H4YEU5	Salmonella_virus	43.1	1.9e-38
>prophage 1
NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	544877	18864	84899	544877	integrase,transposase	Salmonella_phage(20.0%)	58	13562:13577	35033:35048
13562:13577	attL	GCGTCGGTTCTGCCGC	NA	NA	NA	NA
WP_029306638.1|18864_20538_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2K9VH72	Gordonia_phage	25.0	1.1e-06
WP_071040582.1|20665_20893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004635320.1|20889_21828_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_004635327.1|22690_23098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004635330.1|23205_23664_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	36.2	3.2e-12
WP_020206397.1|23913_24564_+	heavy metal efflux RND transporter CzcN	NA	NA	NA	NA	NA
WP_004635335.1|24593_24773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_137924345.1|24878_25226_+	CDF family cobalt-zinc-cadmium transporter CzcI	NA	NA	NA	NA	NA
WP_004635338.1|25301_26558_+	heavy metal efflux RND transporter CzcC	NA	NA	NA	NA	NA
WP_004635340.1|26575_28138_+	heavy metal efflux RND transporter CzcB	NA	NA	NA	NA	NA
WP_004635342.1|28154_31346_+	heavy metal efflux RND transporter CzcA	NA	S5VTK5	Leptospira_phage	24.4	1.4e-77
WP_004635344.1|31396_32347_+	cation transporter	NA	A0A1V0SED0	Indivirus	28.3	6.3e-10
WP_008646724.1|32348_33026_+	heavy metal homeostasis two-component system response regulator CzcR	NA	W8CYM9	Bacillus_phage	33.8	4.9e-33
WP_011229349.1|33030_34461_+	sensor histidine kinase CzcS	NA	W8CYF6	Bacillus_phage	21.9	1.8e-13
WP_011514820.1|34569_34971_+	copper-binding periplasmic protein CzcE	NA	NA	NA	NA	NA
WP_008646716.1|35269_35548_-	hypothetical protein	NA	NA	NA	NA	NA
35033:35048	attR	GCGTCGGTTCTGCCGC	NA	NA	NA	NA
WP_004633552.1|35723_36095_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_004633551.1|36136_36427_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_009238807.1|36489_38019_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	46.1	1.4e-115
WP_011229350.1|38141_39209_-	porin	NA	NA	NA	NA	NA
WP_008650726.1|39505_39928_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_011514822.1|40427_42917_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	39.0	3.9e-112
WP_008650724.1|42974_43277_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_008650723.1|43509_44631_-	glycosyltransferase family 2 protein	NA	U5P087	Shigella_phage	48.3	3.3e-74
WP_008650722.1|44627_45011_-	GtrA family protein	NA	NA	NA	NA	NA
WP_008650720.1|45007_46615_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_008650714.1|48049_48295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080709916.1|50457_50982_-	cytochrome c	NA	NA	NA	NA	NA
WP_080672773.1|53277_53646_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_080672772.1|53621_53837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011229360.1|55607_56618_-|transposase	IS30-like element ISRme10 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.3	1.2e-40
WP_011229361.1|56702_56966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157128667.1|60897_61275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017514740.1|61571_61772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011229366.1|61846_62923_-	signal peptidase II	NA	NA	NA	NA	NA
WP_011229367.1|62919_65319_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	48.1	6.2e-147
WP_008645748.1|65405_65843_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_008645747.1|65964_67893_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_035832055.1|68191_69370_+	MFS transporter	NA	NA	NA	NA	NA
WP_001138070.1|69780_72747_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.9	0.0e+00
WP_027982055.1|72749_73319_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	88.6	2.2e-50
WP_008652068.1|73224_74226_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_003132004.1|74222_74459_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_000995360.1|74455_74821_-	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_003156770.1|74838_76524_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.3	5.5e-41
WP_003131987.1|76595_76871_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_006224622.1|76883_77234_-	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_003131969.1|77305_77740_+	mercury resistance transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_157128668.1|77729_78152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040583.1|79106_79973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040584.1|79987_80386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040585.1|80382_80688_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_084085738.1|81054_81252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040586.1|81414_81618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040587.1|82486_82726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040588.1|82709_83159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040589.1|83227_83464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040591.1|83663_84899_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	57.7	4.9e-132
>prophage 2
NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	544877	321201	373589	544877	integrase,transposase	Salmonella_phage(15.38%)	44	318388:318405	374505:374522
318388:318405	attL	GCCGAGGGCATCGAGGTG	NA	NA	NA	NA
WP_001138070.1|321201_324168_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.9	0.0e+00
WP_071040750.1|325014_326292_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_071040751.1|326434_327316_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_071040752.1|327312_328326_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_071040753.1|328322_329117_+	ATP-binding cassette domain-containing protein	NA	A0A285PWH2	Cedratvirus	27.4	4.0e-10
WP_071040754.1|329110_329824_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.6	1.2e-10
WP_071040755.1|329848_330145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040756.1|330218_331019_+	sterol desaturase family protein	NA	NA	NA	NA	NA
WP_071040757.1|331047_331245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040758.1|331346_332000_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_071040759.1|332350_333106_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	24.4	4.4e-06
WP_084085811.1|333099_333843_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_024570391.1|334749_337683_+|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	23.0	1.0e-47
WP_024570392.1|337820_338876_-	DMT family transporter	NA	NA	NA	NA	NA
WP_024570393.1|338914_342145_-	CusA/CzcA family heavy metal efflux RND transporter	NA	S5VTK5	Leptospira_phage	21.4	1.5e-50
WP_024570394.1|342141_343329_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_024570395.1|343325_344582_-	TolC family protein	NA	NA	NA	NA	NA
WP_017514986.1|344655_345231_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_024570396.1|345227_345674_-	periplasmic heavy metal sensor	NA	NA	NA	NA	NA
WP_017514988.1|345670_345958_-	CnrY/NccY family anti-sigma factor	NA	NA	NA	NA	NA
WP_017514989.1|346091_347066_+	chromate resistance protein	NA	NA	NA	NA	NA
WP_024570397.1|347105_348311_+	chromate transporter	NA	NA	NA	NA	NA
WP_017515809.1|348329_348923_+	superoxide dismutase	NA	NA	NA	NA	NA
WP_017515810.1|348940_349279_+	rhodanese family chromate resistance protein ChrE	NA	NA	NA	NA	NA
WP_024570398.1|349275_349737_+	chromate resistance protein	NA	NA	NA	NA	NA
WP_017515956.1|349754_350381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017515957.1|350635_350920_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_029306638.1|351152_352826_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2K9VH72	Gordonia_phage	25.0	1.1e-06
WP_071040760.1|353347_354214_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_071040761.1|354210_355221_-	hydroxyacid dehydrogenase	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	28.9	5.8e-22
WP_137884915.1|355259_356060_-	phosphonate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	8.4e-24
WP_071040762.1|356090_356939_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_071040763.1|357063_357954_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_071040764.1|357968_358829_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_084085815.1|359082_359529_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	33.3	7.7e-11
WP_084085819.1|360334_360610_-	Killer protein	NA	A0A2L1IV28	Escherichia_phage	43.8	2.2e-16
WP_157128704.1|360599_361277_-	hypothetical protein	NA	A0A1L7N233	Ralstonia_phage	44.1	7.3e-29
WP_084085821.1|361814_362036_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_084085822.1|362298_362532_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_071040768.1|366224_367133_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_071040769.1|367129_369436_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_071040770.1|369432_369915_-	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	30.2	1.7e-08
WP_157128705.1|370136_371420_+	MFS transporter	NA	NA	NA	NA	NA
WP_011517431.1|372380_373589_+|transposase	IS4-like element ISBvi1 family transposase	transposase	NA	NA	NA	NA
374505:374522	attR	CACCTCGATGCCCTCGGC	NA	NA	NA	NA
>prophage 3
NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	544877	450280	514781	544877	integrase,transposase	Bacillus_phage(18.75%)	55	450862:450881	483002:483021
WP_157128356.1|450280_451091_+|transposase	IS5 family transposase	transposase	A0A0M5M147	Mycobacterium_phage	31.9	2.3e-21
450862:450881	attL	CGCAAGCCGCTTCACGCCGC	NA	NA	NA	NA
WP_084085834.1|451516_451933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071022964.1|452124_452505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_084085836.1|452514_452730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071022962.1|453221_453491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040819.1|453575_453965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040820.1|454031_455588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040821.1|455837_456863_+	ATP-binding protein	NA	M4SLY4	Vibrio_phage	26.0	4.7e-27
WP_071040822.1|456952_457870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040823.1|457878_459063_+	hypothetical protein	NA	G3MAV6	Bacillus_virus	33.5	1.6e-50
WP_071040824.1|459224_459611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071022945.1|459720_460119_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA	NA
WP_071040825.1|460139_460724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084085838.1|460782_461385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040826.1|462277_463549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040827.1|463676_465062_+	metallophosphatase family protein	NA	NA	NA	NA	NA
WP_071040828.1|465218_465740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071040829.1|465727_468052_+	nuclease SbcCD subunit C	NA	Q6NDW9	Leptospira_phage	35.8	1.8e-26
WP_071040831.1|468481_468994_+	NADAR family protein	NA	A0A1S6UAJ7	Serratia_phage	44.2	1.1e-34
WP_071040832.1|469220_469658_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_071040833.1|469755_470694_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_157128714.1|471288_471926_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	38.7	3.3e-31
WP_157128715.1|472214_472580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157128717.1|474204_475113_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_071040835.1|475209_476553_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_071040874.1|476599_477052_-	dehydratase	NA	NA	NA	NA	NA
WP_071040875.1|477066_478629_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_071040836.1|479027_479768_+	transcriptional regulator TrmB	NA	NA	NA	NA	NA
WP_004635335.1|481791_481971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011229345.1|482076_482424_+	CDF family cobalt-zinc-cadmium transporter CzcI	NA	NA	NA	NA	NA
WP_071040839.1|482499_483756_+	heavy metal efflux RND transporter CzcC	NA	NA	NA	NA	NA
483002:483021	attR	CGCAAGCCGCTTCACGCCGC	NA	NA	NA	NA
WP_004635340.1|483773_485336_+	heavy metal efflux RND transporter CzcB	NA	NA	NA	NA	NA
WP_004635342.1|485352_488544_+	heavy metal efflux RND transporter CzcA	NA	S5VTK5	Leptospira_phage	24.4	1.4e-77
WP_004635344.1|488594_489545_+	cation transporter	NA	A0A1V0SED0	Indivirus	28.3	6.3e-10
WP_008646724.1|489546_490224_+	heavy metal homeostasis two-component system response regulator CzcR	NA	W8CYM9	Bacillus_phage	33.8	4.9e-33
WP_011229349.1|490228_491659_+	sensor histidine kinase CzcS	NA	W8CYF6	Bacillus_phage	21.9	1.8e-13
WP_011514820.1|491767_492169_+	copper-binding periplasmic protein CzcE	NA	NA	NA	NA	NA
WP_008646716.1|492467_492746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011229350.1|492928_493996_-	porin	NA	NA	NA	NA	NA
WP_085960481.1|494112_495299_-|transposase	IS3-like element ISRme13 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	39.7	3.2e-56
WP_008650726.1|495583_496006_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_011514822.1|496505_498995_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	39.0	3.9e-112
WP_008650724.1|499052_499355_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_008650723.1|499587_500709_-	glycosyltransferase family 2 protein	NA	U5P087	Shigella_phage	48.3	3.3e-74
WP_008650722.1|500705_501089_-	GtrA family protein	NA	NA	NA	NA	NA
WP_008650720.1|501085_502693_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_049768032.1|503542_503869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012435773.1|503967_504531_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_099047663.1|504676_504799_-	YHYH domain-containing protein	NA	NA	NA	NA	NA
WP_071037935.1|507316_508639_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	53.5	4.0e-63
WP_071040841.1|508980_509844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071040842.1|510080_510335_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_071040843.1|510654_511431_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_071040844.1|511563_512844_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.5	1.9e-22
WP_071037935.1|513458_514781_-|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	53.5	4.0e-63
