assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001854285.1_ASM185428v1	NZ_CP017751	Cupriavidus sp. USMAHM13 chromosome 1, complete sequence	1	772393-772525	1	CRISPRCasFinder	no		csa3,WYL,cas3,DinG,DEDDh,RT	Orphan	GTCGGCTCCCCCGCAGGGGGAGTCGAAACAGGCCGTTG	38	1	3	772431-772487|772431-772487|772431-772487	NZ_CP017751.1_1342813-1342757|NZ_CP017751.1_1862369-1862425|NZ_CP017752.1_2656073-2656129	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh,RT	NA,NA	NA|306aa|up_9|NZ_CP017751.1_761642_762560_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|334aa|up_8|NZ_CP017751.1_762620_763622_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|223aa|up_7|NZ_CP017751.1_763608_764277_+	PRK09480, slmA, division inhibitor protein; Provisional	NA|391aa|up_6|NZ_CP017751.1_764618_765791_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|204aa|up_5|NZ_CP017751.1_765787_766399_+	TIGR02081, conserved_hypothetical_protein, methionine biosynthesis protein MetW	NA|331aa|up_4|NZ_CP017751.1_766377_767370_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|286aa|up_3|NZ_CP017751.1_767564_768422_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|284aa|up_2|NZ_CP017751.1_768545_769397_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|419aa|up_1|NZ_CP017751.1_769428_770685_-	PRK11902, ampG, muropeptide transporter; Reviewed	NA|319aa|up_0|NZ_CP017751.1_770847_771804_+	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase	NA|316aa|down_0|NZ_CP017751.1_772701_773649_-	PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase; Provisional	NA|259aa|down_1|NZ_CP017751.1_773776_774553_-	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|234aa|down_2|NZ_CP017751.1_774582_775284_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|472aa|down_3|NZ_CP017751.1_775523_776939_+	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|270aa|down_4|NZ_CP017751.1_776976_777786_-	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family	NA|289aa|down_5|NZ_CP017751.1_777849_778716_-	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|298aa|down_6|NZ_CP017751.1_778771_779665_-	PRK06946, PRK06946, lipid A biosynthesis lauroyl acyltransferase; Provisional	NA|292aa|down_7|NZ_CP017751.1_779661_780537_-	PRK08905, PRK08905, lysophospholipid acyltransferase family protein	NA|388aa|down_8|NZ_CP017751.1_780789_781953_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|315aa|down_9|NZ_CP017751.1_782227_783172_+	pfam11004, Kdo_hydroxy, 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase
GCF_001854285.1_ASM185428v1	NZ_CP017752	Cupriavidus sp. USMAHM13 chromosome 2, complete sequence	1	585336-585430	1	CRISPRCasFinder	no		csa3,DEDDh	Orphan	CGCGACCCGTACTCGGATGGCGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh,RT	NA|141aa|up_5|NZ_CP017752.1_579840_580263_+,NA|108aa|down_8|NZ_CP017752.1_594913_595237_-	NA|333aa|up_9|NZ_CP017752.1_575545_576544_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|283aa|up_8|NZ_CP017752.1_576540_577389_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|328aa|up_7|NZ_CP017752.1_577388_578372_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|262aa|up_6|NZ_CP017752.1_578441_579227_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|141aa|up_5|NZ_CP017752.1_579840_580263_+	NA	NA|233aa|up_4|NZ_CP017752.1_580418_581117_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_3|NZ_CP017752.1_581296_582835_+	PRK08316, PRK08316, acyl-CoA synthetase; Validated	NA|262aa|up_2|NZ_CP017752.1_582910_583696_-	PRK11280, PRK11280, hypothetical protein; Provisional	NA|151aa|up_1|NZ_CP017752.1_583831_584284_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|190aa|up_0|NZ_CP017752.1_584460_585030_+	pfam02325, YGGT, YGGT family	NA|309aa|down_0|NZ_CP017752.1_585613_586540_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|275aa|down_1|NZ_CP017752.1_586815_587640_+	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|276aa|down_2|NZ_CP017752.1_587682_588510_-	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|306aa|down_3|NZ_CP017752.1_588659_589577_+	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA)	NA|353aa|down_4|NZ_CP017752.1_589581_590640_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|664aa|down_5|NZ_CP017752.1_590636_592628_+	pfam11992, DUF3488, Domain of unknown function (DUF3488)	NA|164aa|down_6|NZ_CP017752.1_592760_593252_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|519aa|down_7|NZ_CP017752.1_593266_594823_+	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|108aa|down_8|NZ_CP017752.1_594913_595237_-	NA	NA|487aa|down_9|NZ_CP017752.1_595533_596994_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family
GCF_001854285.1_ASM185428v1	NZ_CP017752	Cupriavidus sp. USMAHM13 chromosome 2, complete sequence	2	2402761-2402863	2	CRISPRCasFinder	no		csa3,DEDDh	Orphan	GCGCCCTGGCTGTAGGGGTCGAACT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh,RT	NA|302aa|up_1|NZ_CP017752.1_2399740_2400646_+,NA	NA|297aa|up_9|NZ_CP017752.1_2391475_2392366_-	cd10939, CE4_ArnD, Catalytic domain of Escherichia coli 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD and other bacterial homologs	NA|351aa|up_8|NZ_CP017752.1_2392377_2393430_-	PRK11908, PRK11908, bifunctional UDP-4-keto-pentose/UDP-xylose synthase	NA|315aa|up_7|NZ_CP017752.1_2393426_2394371_-	PRK06988, PRK06988, formyltransferase	NA|334aa|up_6|NZ_CP017752.1_2394358_2395360_-	PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional	NA|395aa|up_5|NZ_CP017752.1_2395338_2396523_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|124aa|up_4|NZ_CP017752.1_2396535_2396907_-	PRK02971, PRK02971, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional	NA|582aa|up_3|NZ_CP017752.1_2396914_2398660_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|190aa|up_2|NZ_CP017752.1_2398970_2399540_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|302aa|up_1|NZ_CP017752.1_2399740_2400646_+	NA	NA|569aa|up_0|NZ_CP017752.1_2400845_2402552_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|308aa|down_0|NZ_CP017752.1_2403169_2404093_-	cd13688, PBP2_GltI_DEBP, Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold	NA|690aa|down_1|NZ_CP017752.1_2404445_2406515_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|458aa|down_2|NZ_CP017752.1_2406693_2408067_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|376aa|down_3|NZ_CP017752.1_2408228_2409356_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|929aa|down_4|NZ_CP017752.1_2409358_2412145_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|327aa|down_5|NZ_CP017752.1_2412148_2413129_-	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional	NA|518aa|down_6|NZ_CP017752.1_2413369_2414923_-	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown]	NA|416aa|down_7|NZ_CP017752.1_2415109_2416357_+	COG3174, COG3174, Predicted membrane protein [Function unknown]	NA|159aa|down_8|NZ_CP017752.1_2416582_2417059_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|662aa|down_9|NZ_CP017752.1_2417063_2419049_+	pfam04632, FUSC, Fusaric acid resistance protein family
