The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	0	59497	4257407	transposase,tRNA	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_005012067.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	70134	123122	4257407	transposase,tRNA	Planktothrix_phage(20.0%)	51	NA	NA
WP_005012808.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	136206	208682	4257407	transposase,tRNA	Bacillus_phage(16.67%)	58	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|137575_139084_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|139830_143793_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|143845_144628_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|144715_145939_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|145922_146855_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|146860_147673_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|148985_149957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|150075_150858_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|151624_152605_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|152601_153330_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|153354_153786_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|153887_154763_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|154813_156013_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|156116_156578_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|156683_158081_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|158077_158755_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|158810_160121_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|160132_160831_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|160994_161771_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|161936_162959_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|163187_163823_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_070797692.1|163828_165382_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	2.7e-34
WP_005015810.1|165940_166891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168334_169237_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169214_169844_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170126_171557_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171590_172220_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172268_173876_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173900_174584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174665_175142_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929577.1|175348_176299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|176397_177348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|178463_178991_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|179082_179898_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|179958_180693_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|180730_182809_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|183058_183331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|183432_184518_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|184521_186426_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|186422_190097_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|190157_190721_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|190728_191151_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|191178_191598_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|191626_192073_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|192199_192697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|192851_195122_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|195197_196403_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|196501_197452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|197554_198190_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|198186_199080_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|199474_200575_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200656_201031_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|201090_203955_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|204099_204840_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204909_206121_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|206149_207118_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|207731_208682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	217761	333431	4257407	transposase,protease,tRNA	uncultured_Caudovirales_phage(12.5%)	101	NA	NA
WP_033446404.1|217761_220557_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|221150_223994_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|224164_224884_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|224922_225471_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|225625_226525_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|226549_227500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|227718_228414_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|228430_229843_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|229955_231386_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|231427_233341_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|233659_234226_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|234316_235318_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|235432_236383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|236469_237420_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|237416_238367_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|238465_239263_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|240212_240623_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|241644_242388_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242431_243475_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243645_245748_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|247158_248115_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|248133_248625_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248621_249977_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|249977_250676_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250672_251374_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251626_252676_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252781_253723_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253719_255609_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_033446171.1|255713_256334_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|256476_257862_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257792_258329_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258480_259872_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|259888_260869_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|261004_261988_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|262052_262952_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|263058_264813_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264820_265945_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|265958_266939_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267669_268620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|269179_269725_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|269850_271428_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271443_272598_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272611_272737_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272733_274485_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274481_276161_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|276223_276772_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277914_278193_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279236_280187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|280173_280389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|280464_280626_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|280633_280774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|281292_281742_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281751_282363_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|282521_283370_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|283395_284778_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|284842_285484_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|285623_286082_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|286106_286883_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|286936_288073_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|288069_289020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|289118_289745_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|289767_290694_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|290702_292289_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|292285_293290_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|293489_294350_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|294381_295383_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|295453_296263_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|296340_298200_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|298328_299531_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|299644_300526_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|302028_302589_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|302648_303599_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|303790_304078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|304166_305117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929727.1|305113_306112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815019.1|306154_306658_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929728.1|306661_307552_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815015.1|307774_308938_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815013.1|309034_309955_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815011.1|309958_310924_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815010.1|310920_311715_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_010929729.1|311708_312413_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_010929730.1|315776_316640_+	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929731.1|316642_317812_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814996.1|317852_319502_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_003814993.1|319503_319938_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814990.1|319962_320364_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929732.1|320457_322083_-	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_010929733.1|322322_323606_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_003814984.1|323622_324276_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929734.1|324272_325121_-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814980.1|325237_325402_+	rubredoxin	NA	NA	NA	NA	NA
WP_010927118.1|325489_326095_+	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_010929735.1|326087_326489_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_003820560.1|326502_327456_+	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929736.1|327452_328628_+	dihydroorotase	NA	NA	NA	NA	NA
WP_010929737.1|328747_329488_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929738.1|329524_330358_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929739.1|330354_331533_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_003814960.1|331629_332358_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_005013747.1|332480_333431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	357014	416482	4257407	transposase,tRNA	Streptococcus_phage(50.0%)	56	NA	NA
WP_005012067.1|357014_357965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929759.1|358076_358799_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815420.1|358897_359641_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010929760.1|359871_361380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815418.1|361499_362231_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929761.1|362275_363736_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929762.1|363760_364240_+	heme-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|364258_365269_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929763.1|365483_366224_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997839.1|366430_367441_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_010929765.1|367400_368351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929766.1|369399_370038_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_010929767.1|370074_371418_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_010929768.1|371840_372629_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
WP_010929769.1|372766_373441_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929770.1|373554_375009_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|375011_376550_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|376552_376861_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|377091_378135_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|378223_379108_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|379094_379658_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|379671_381624_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815198.1|381620_382757_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|382782_383838_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|383848_385342_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|385554_386130_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|386179_386926_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|386925_387828_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|388089_388878_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|389018_389510_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|389506_390250_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_033446211.1|390246_390840_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.6e-17
WP_100208326.1|390848_391325_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|391449_392388_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|392384_392957_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|392953_393904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|394040_394958_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|394954_395203_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|395199_396405_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|396477_397473_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|397495_398716_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|398712_399357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|401087_401897_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|402201_403155_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_005013747.1|403253_404204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486049.1|404302_405286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|405212_405914_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|405962_406733_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|406729_407908_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|408075_409782_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|409778_410675_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|410715_412305_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|412354_413347_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|413415_414015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|414475_415456_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|415531_416482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	424293	479267	4257407	transposase	Bradyrhizobium_phage(20.0%)	44	NA	NA
WP_022997984.1|424293_425271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|425466_426672_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|426668_428180_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|428195_429509_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|429699_429879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|430288_431023_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|433467_434418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|434549_434948_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|435358_435829_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|435917_436262_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|436361_437762_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|439550_440069_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|440179_440935_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|441130_442363_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|442355_443141_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|443207_444179_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|444189_445167_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|445292_446465_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|446491_447520_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|447585_448779_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|450560_451511_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|451609_452560_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|452658_453564_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|453739_453943_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|454453_454894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929797.1|454923_455583_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248869.1|455668_457285_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|457305_458769_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|458799_462186_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|462327_462732_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|462875_463862_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|463848_464130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|464875_466108_-	dehydratase	NA	NA	NA	NA	NA
WP_010929804.1|466107_466602_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|466733_467696_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|467673_468927_-	CoA transferase	NA	NA	NA	NA	NA
WP_005013747.1|469048_469999_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003821340.1|469995_470658_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_010929831.1|470665_471625_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_010929830.1|471781_472453_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_033446197.1|472455_473361_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247670.1|473928_477057_+	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_010929827.1|477132_478200_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|478316_479267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	593565	654755	4257407	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|593565_594516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|594991_595882_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|595878_596700_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|596898_597390_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|597408_598482_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|598528_599632_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|599707_600328_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|600348_600858_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|600912_601164_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|601227_602361_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|602368_602755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|602751_605271_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|605699_606038_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|606034_606541_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|606602_607403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|607513_608455_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|608548_610084_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|611763_613614_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|613617_614451_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|614450_615392_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|615643_616615_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|616756_619045_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|619351_620260_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|620314_621280_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|621354_623016_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|623087_623798_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|623764_623929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|623946_624897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|625595_625979_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|626036_626639_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|626656_627058_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|627173_628085_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|628081_628663_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_033446151.1|629466_630192_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|630232_631282_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|631429_632008_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|632394_633372_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|633465_637860_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|638060_638909_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|639067_639880_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|639935_640886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|640984_641785_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|641846_642230_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|642241_643594_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|643881_644211_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|644213_644963_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|645145_646066_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|646112_646325_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|646347_646770_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|646786_647887_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|647983_649501_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|649576_650416_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|650437_651310_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_070797680.1|651400_652495_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|652788_653739_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|653813_654755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	660079	707319	4257407	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|660079_661105_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|661145_661385_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|661454_663044_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|663043_663592_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|663672_664245_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|664263_665175_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|665248_666217_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|666339_667413_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|667417_669238_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_005015810.1|669314_670265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|670353_670689_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|670822_671473_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|671494_672913_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|672982_673738_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|673706_674465_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|674475_675357_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|675373_676081_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|676083_676842_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|677051_678794_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|678786_679311_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|679350_680145_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|680312_681386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681484_682435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|682686_682893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|682964_683576_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|684130_684382_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|684374_685064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|685081_685303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|685320_686271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|686910_687396_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|687382_688660_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|688662_690081_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|690109_691165_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|691170_691413_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|691535_692138_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|693615_694566_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|695240_695492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|695554_696037_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|696038_696239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|696238_696634_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|696630_697029_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|697025_697448_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|697455_697956_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|698210_698729_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|698738_699068_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|699085_699376_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|699401_702014_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|702023_702383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|702450_702984_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|702980_703370_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|703362_707319_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 9
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	713485	767415	4257407	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|713485_715216_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|715268_715697_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|715699_716380_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|716379_716838_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|716874_717849_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|717865_719182_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|719213_719711_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|719797_720487_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|720486_721536_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|721532_722327_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|722495_722846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|722821_723379_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|724508_725459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|727596_728826_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|728828_730271_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|730375_731521_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|731552_732350_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|732374_733934_-	chaperone SurA	NA	NA	NA	NA	NA
WP_033446130.1|733930_736297_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_023852735.1|736475_737516_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|737515_738208_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|738351_739053_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|739037_739415_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|740146_741097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|741256_742129_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|742469_742688_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|742727_744107_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|744148_745546_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|745585_747238_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|747241_748126_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|748125_749067_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|749145_750765_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|750931_751747_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|751814_752384_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|752384_753335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|753989_755087_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|755120_756386_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|756543_757494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|757737_758328_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|758343_760788_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|760907_761879_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|762010_762535_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|762494_763445_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|763666_765862_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|765934_766363_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|766464_767415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	1030516	1085608	4257407	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1030516_1031467_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1031565_1032306_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1032500_1034537_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1034554_1035565_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1035682_1036876_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1036905_1037679_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1037675_1038866_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1038891_1039830_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1039826_1042175_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1042329_1042971_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1043074_1044208_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1044300_1044453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1044484_1045033_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1045051_1045537_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1045714_1046653_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1046655_1046973_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1047018_1047963_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1049643_1050294_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1050347_1050683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1050679_1051540_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1051556_1051838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1051911_1052175_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1052418_1053369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1053667_1054405_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1054840_1055164_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1055198_1055759_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1055879_1056755_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1056767_1057715_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1057816_1058110_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1058136_1060194_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1060208_1060709_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1060782_1062489_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1063352_1064405_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1064457_1064847_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1064855_1065488_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930147.1|1065587_1066604_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1067434_1068442_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1068438_1070082_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1070078_1070966_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1071106_1071580_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1071569_1072592_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1072588_1074016_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1074953_1075970_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1076302_1077238_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1077287_1079168_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1079234_1079579_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1079723_1080860_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1080856_1081930_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1082087_1083524_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1083614_1084256_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930320.1|1084591_1085608_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	1091583	1163603	4257407	transposase,holin,tRNA	Planktothrix_phage(18.18%)	57	NA	NA
WP_003819794.1|1091583_1091997_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1091998_1092358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1092400_1093945_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1094028_1094859_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1094893_1096048_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1096090_1096963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1097079_1099368_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1100574_1101039_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1101065_1102016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_157734659.1|1102033_1102171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1102383_1103160_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1103204_1104062_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1104083_1105100_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1105234_1106275_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1106469_1108551_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1108786_1110280_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1110510_1111305_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1111525_1112884_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1112880_1113723_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1113741_1115628_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1115569_1115821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1115865_1116498_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1116516_1117119_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1117270_1118221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1118801_1119509_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1119867_1120854_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1120993_1122007_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1122003_1122954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1122971_1123112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1123066_1123525_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1123561_1124875_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1124892_1125264_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1125260_1126724_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1126864_1127593_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1127574_1130424_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930184.1|1131753_1132578_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1132577_1133456_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1134360_1135476_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1135504_1136299_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1136295_1138161_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1138239_1138872_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1138868_1139171_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1139213_1140734_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1140740_1141496_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1141525_1142630_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1142732_1144433_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_023853218.1|1144414_1145356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1145401_1146682_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1146674_1147370_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1147403_1148231_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1148512_1151743_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1152478_1156405_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1158304_1160101_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1160100_1161069_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1161138_1161984_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1162051_1162606_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1162652_1163603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	1323054	1391541	4257407	transposase	Planktothrix_phage(33.33%)	56	NA	NA
WP_005012808.1|1323054_1324005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1324773_1325412_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1326301_1326748_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1326829_1327531_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1327531_1328299_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1328295_1329534_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1329533_1330460_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1330562_1331678_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1331693_1332644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1332997_1333579_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1333575_1334409_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1334619_1335933_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_070797684.1|1336109_1336991_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1337010_1337862_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1337914_1339003_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1339113_1340241_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1340475_1341087_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1341185_1342136_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1342357_1342735_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1342882_1343380_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1343376_1343904_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1344037_1344853_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1344865_1346047_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1346094_1346988_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1347114_1347585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1347710_1348538_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|1349629_1350094_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1350105_1350807_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1350916_1351417_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1351499_1352678_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1354305_1354641_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1354828_1356277_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1356334_1356679_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1356785_1357325_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1357417_1358368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1358385_1358625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1359106_1359538_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1359719_1360124_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1361360_1361684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1361686_1362574_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1362606_1363032_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1363103_1363457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1363696_1364203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1364241_1365573_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1365632_1366448_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1366444_1367299_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1370361_1372905_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1374271_1376026_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1376022_1378143_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1378147_1380343_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1380339_1383681_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1386483_1387434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1387499_1387679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1387795_1388551_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1388537_1389683_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1390590_1391541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	1417544	1471114	4257407	transposase	Planktothrix_phage(33.33%)	49	NA	NA
WP_010930208.1|1417544_1418495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1418593_1419364_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1419360_1420041_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1420107_1420896_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1421142_1422159_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1422464_1423619_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1428124_1428607_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1428624_1428915_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1429041_1429752_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1429935_1430343_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1430355_1430775_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1430822_1431527_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1431592_1433014_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1433052_1433817_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1433860_1434646_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1434645_1435335_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1435337_1436471_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1436488_1437511_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1437580_1439227_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1439260_1440793_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930331.1|1440871_1442692_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1442812_1444432_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1444610_1446053_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1446269_1447286_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1447332_1448121_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1448143_1448413_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930334.1|1448429_1449164_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1449232_1449574_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1449584_1450085_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1450077_1451088_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1451090_1451663_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1452032_1452983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1453751_1454390_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1455279_1455726_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1455807_1456509_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1456509_1457277_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1457273_1458512_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1458511_1459438_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1459540_1460656_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1460671_1461622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1461975_1462557_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1462553_1463387_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1463597_1464911_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_070797684.1|1465087_1465969_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1465988_1466840_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1466892_1467981_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1468091_1469219_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1469453_1470065_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1470163_1471114_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	1515461	1581961	4257407	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1515461_1516412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1516477_1516657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1516773_1517529_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1517515_1518661_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1519568_1520519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1520706_1521909_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1521905_1522664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1523057_1523690_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1524645_1527246_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1527233_1530653_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1530660_1531566_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1531704_1532283_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1532279_1533191_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1533204_1533885_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1534086_1536126_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1536144_1537131_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1537156_1537954_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1537950_1539144_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1539140_1540103_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1540120_1541161_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1541148_1541757_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1543345_1544341_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1544360_1545539_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1545549_1546467_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1546522_1547473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1547571_1548342_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1548338_1549019_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1549085_1549874_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1550120_1551137_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1551442_1552597_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1557102_1557585_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1557602_1557893_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1558019_1558730_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1558913_1559321_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1559333_1559753_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1559800_1560505_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1560570_1561992_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1562030_1562795_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1562838_1563624_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1563623_1564313_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1564315_1565449_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1565466_1566489_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1566558_1568205_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1568238_1569771_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930331.1|1569849_1571670_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1571790_1573410_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1573588_1575031_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1575247_1576264_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1576310_1577099_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1577121_1577391_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930334.1|1577407_1578142_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1578210_1578552_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1578562_1579063_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1579055_1580066_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1580068_1580641_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1581010_1581961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	1610132	1648722	4257407	transposase,protease	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1610132_1611467_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1611519_1613856_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1613981_1614545_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1614553_1615645_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1615716_1616172_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1616172_1616967_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1616963_1618145_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1618131_1618737_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1618733_1619507_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1619518_1620346_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1620507_1622871_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1622938_1623658_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1623781_1624207_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1624241_1625192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1625309_1626236_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1626301_1627459_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1627439_1627907_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1628054_1629005_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1629021_1629456_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1629445_1629796_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1629992_1631147_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1631143_1632316_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1632363_1633257_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1633302_1633740_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1633799_1634489_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1634498_1635449_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1635547_1636498_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1636596_1637559_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1637785_1638940_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1638950_1642193_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1643214_1643859_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_070797685.1|1643869_1644769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1644816_1645902_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1645898_1647593_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_162268680.1|1647589_1647754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1647771_1648722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	2023848	2098708	4257407	transposase,tRNA	Bacillus_virus(33.33%)	60	NA	NA
WP_023997643.1|2023848_2024799_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443761.1|2024859_2025894_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|2025993_2027259_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|2027652_2028669_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930634.1|2029012_2029513_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003810016.1|2029554_2029869_+	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010930635.1|2029878_2030820_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003810020.1|2030816_2031341_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003820128.1|2031343_2032612_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_004568037.1|2032640_2033624_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930636.1|2033620_2034430_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003820133.1|2034426_2035230_+	aspartate dehydrogenase	NA	NA	NA	NA	NA
WP_010930638.1|2035244_2036012_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003820136.1|2036099_2036738_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930639.1|2036742_2037696_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930640.1|2037807_2038932_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810039.1|2040569_2041397_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930641.1|2041393_2042197_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930642.1|2042193_2043285_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.6	9.3e-26
WP_010930643.1|2043691_2044720_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_019247348.1|2044878_2045583_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930644.1|2045591_2047712_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930645.1|2047712_2048669_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820147.1|2048737_2049130_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930646.1|2049133_2049610_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_003820150.1|2049623_2049959_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930647.1|2049965_2050415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446196.1|2050628_2050922_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930648.1|2050974_2052087_+	alkene reductase	NA	NA	NA	NA	NA
WP_015041299.1|2052091_2052730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820153.1|2052710_2053970_-	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
WP_010930650.1|2053973_2056079_-	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
WP_010930651.1|2056084_2058070_-	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
WP_010930652.1|2058278_2058515_+	membrane protein	NA	NA	NA	NA	NA
WP_003820159.1|2058859_2059345_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|2059712_2060663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930653.1|2060709_2061918_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930654.1|2062009_2063959_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930655.1|2063955_2064732_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.5	1.3e-13
WP_010930656.1|2064728_2065499_+	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	29.2	3.3e-09
WP_029443796.1|2067942_2068431_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930658.1|2068540_2069692_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010929891.1|2069992_2070745_+	maleate isomerase	NA	NA	NA	NA	NA
WP_010929892.1|2071611_2072643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929893.1|2072658_2073276_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_010930525.1|2073467_2074484_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_061363663.1|2076556_2077963_+	ferric reductase	NA	NA	NA	NA	NA
WP_010930660.1|2077973_2080082_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930661.1|2080836_2081802_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853569.1|2083507_2084776_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853578.1|2085085_2085742_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930663.1|2085843_2087271_+	phosphomannomutase/phosphoglucomutase	NA	NA	NA	NA	NA
WP_010930664.1|2087280_2088852_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930665.1|2089034_2089988_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_010930666.1|2090049_2091276_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930667.1|2091288_2092113_+	NAD-dependent protein deacetylase	NA	NA	NA	NA	NA
WP_010930668.1|2092181_2093033_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_010930669.1|2093210_2094680_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930670.1|2094759_2096025_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA	NA
WP_005013747.1|2097757_2098708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	2185645	2258858	4257407	transposase	Bacillus_virus(20.0%)	60	NA	NA
WP_010929591.1|2185645_2186596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2187047_2188049_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2188221_2189079_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2189075_2190338_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2190438_2190813_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2190885_2192073_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2192157_2192928_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2193041_2193806_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2193756_2195058_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_023853104.1|2195066_2195861_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2197605_2198577_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2198733_2199246_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2199404_2200379_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2201379_2202174_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2202199_2203006_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2203116_2203707_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2203717_2204896_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2204998_2205373_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2205625_2206957_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2207023_2210254_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2211744_2212491_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2212575_2213037_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2213074_2214133_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2214095_2215925_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2215964_2216537_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2217961_2218783_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2219101_2220424_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2220783_2221419_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2221378_2222329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2223199_2224072_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2224149_2225289_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2225647_2226904_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2226909_2227437_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2227441_2228260_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2228259_2228982_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2229003_2229318_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2229335_2230484_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2230514_2231390_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2231386_2232706_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2232778_2233975_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2233985_2235473_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2238067_2238967_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2239104_2240070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2240168_2241119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2241340_2242291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2242287_2242590_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2242749_2243154_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2243146_2244373_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2244369_2244816_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2244885_2245668_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2245709_2247215_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2247500_2248334_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2249771_2250593_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2250611_2251466_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2251469_2252441_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2253125_2253302_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2253787_2254738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2255875_2256172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2256346_2257699_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2257841_2258858_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	2272064	2316387	4257407	transposase	Bacillus_phage(25.0%)	45	NA	NA
WP_010929577.1|2272064_2273015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2273667_2274618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2274701_2276519_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2276592_2277240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2277252_2278182_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2278351_2278816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2279063_2279744_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2279792_2281484_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2281499_2282051_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2282047_2282419_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2282531_2283368_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2283378_2283903_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2284000_2284180_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2284309_2285284_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2285414_2285771_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2285760_2286636_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2286734_2287619_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2287640_2288936_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2289884_2290535_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2290622_2292143_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2292400_2294266_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2295311_2296262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2296279_2296420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2297234_2297594_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2297581_2299018_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2299014_2299668_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2299664_2300858_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2300961_2302236_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2302232_2303183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268682.1|2303200_2303455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930774.1|2303349_2304324_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2304320_2304464_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2306085_2306748_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2306750_2306927_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2306923_2307862_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2307953_2309444_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2309529_2309682_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2309695_2309935_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2310030_2310774_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2310806_2311307_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2311405_2312329_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2312325_2313087_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2313102_2314188_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2314387_2315338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2315436_2316387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	2326627	2385897	4257407	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_010930787.1|2326627_2327527_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2327545_2328850_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2328815_2329922_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2330009_2330246_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2330384_2331455_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2331458_2332814_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2332840_2333998_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2334003_2334642_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2334643_2335939_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2335988_2337275_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2337290_2337797_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2337793_2338942_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2338969_2339395_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2339717_2342600_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2342692_2343448_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2344213_2345563_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2345661_2346612_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2346710_2347661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2347734_2348208_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2348233_2349442_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2349438_2350212_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2350211_2350835_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2351000_2351261_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2351564_2352146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2352212_2352467_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2352453_2355078_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2355149_2355968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2355964_2356570_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2356607_2357741_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2359456_2359831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2359928_2361203_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2361206_2362784_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2363690_2365046_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2365042_2366677_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2366669_2367500_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2367517_2368462_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2368514_2370089_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446181.1|2370136_2370502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2370488_2370809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2370924_2371857_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2371959_2372916_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2373065_2374403_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2374407_2375664_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2375859_2376906_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2376963_2377332_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2377462_2378335_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2378411_2379314_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2380370_2381588_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2382861_2383812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2384012_2384822_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2384946_2385897_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	2437145	2500111	4257407	transposase,tRNA	Synechococcus_phage(12.5%)	55	NA	NA
WP_010929591.1|2437145_2438096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853004.1|2438194_2440198_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2440248_2441214_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2441203_2444065_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2444067_2444574_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2444678_2445887_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2445888_2446827_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2446988_2447462_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2447458_2448409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2448519_2448960_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2449088_2450318_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2450356_2451178_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2451231_2452383_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852690.1|2452474_2452945_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2455513_2458063_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2458133_2460707_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2460972_2461173_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2461204_2461366_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2461423_2461762_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2461910_2462861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2463635_2464304_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2464285_2466241_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2466483_2467233_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2467245_2468109_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2468112_2469528_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2469661_2470390_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2470528_2470729_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2470904_2471303_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2471326_2472727_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2472845_2473598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2473886_2474564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2474590_2475370_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2475366_2476251_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2476268_2477048_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2477032_2477791_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2477928_2478564_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2478831_2479848_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2479945_2480986_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2481120_2482413_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2483772_2484156_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2484173_2484761_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2484798_2485749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2486733_2487507_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2487503_2488502_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2488586_2489363_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2489518_2491123_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2491503_2492628_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2492754_2493378_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2493374_2495276_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2495324_2496119_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2496131_2497133_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2497129_2497579_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2497628_2498477_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2498574_2499117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2499160_2500111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	2507407	2562998	4257407	transposase	uncultured_Caudovirales_phage(25.0%)	47	NA	NA
WP_010929588.1|2507407_2508358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2508456_2508753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2508859_2509777_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2509781_2510495_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2510508_2511480_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2513229_2513580_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2513583_2514771_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2515209_2515932_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2516225_2517176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249376.1|2517172_2517601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811538.1|2519002_2519965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2520080_2521034_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930501.1|2521043_2522036_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930500.1|2522087_2522843_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930499.1|2522907_2523597_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930498.1|2523818_2524769_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930497.1|2524799_2525996_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_019247910.1|2525986_2526766_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247909.1|2526878_2527805_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930494.1|2527890_2528835_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930493.1|2528812_2529682_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930492.1|2529925_2530549_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247905.1|2530863_2531163_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023995112.1|2531176_2534251_-	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930489.1|2534380_2535055_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019247865.1|2535047_2536862_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930487.1|2536915_2537863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2537967_2538918_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_070797687.1|2539470_2541096_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	49.4	3.3e-136
WP_010930475.1|2541145_2542180_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2542182_2543529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2543525_2545040_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2545030_2546041_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2546514_2547456_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2547464_2548433_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2549972_2550941_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2551118_2552108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2552154_2552913_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2553102_2553840_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2553938_2554889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2555073_2555856_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2555849_2556551_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2556790_2557393_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2558719_2559670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_070797688.1|2559666_2561223_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2561215_2561989_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2562047_2562998_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	2598947	2665274	4257407	transposase	Ectocarpus_siliculosus_virus(11.11%)	56	NA	NA
WP_005012067.1|2598947_2599898_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2599917_2600823_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2600900_2601599_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2601758_2602703_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2602712_2604200_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2604199_2605267_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2605330_2606743_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2606928_2608149_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2608170_2609121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930449.1|2609219_2609861_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010930448.1|2609987_2611790_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811152.1|2613441_2614347_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930446.1|2614528_2615905_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811149.1|2616071_2616812_-	ribonuclease PH	NA	NA	NA	NA	NA
WP_003811148.1|2616948_2617875_+	YicC family protein	NA	NA	NA	NA	NA
WP_010930445.1|2618147_2618303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926696.1|2618440_2618725_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811138.1|2618783_2620274_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_003811137.1|2620518_2621118_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811135.1|2621122_2621893_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930444.1|2622130_2622844_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930443.1|2622840_2623758_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930442.1|2623893_2624526_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930441.1|2624567_2624771_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930440.1|2624795_2627075_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_003811113.1|2627087_2627816_-	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_003811112.1|2627812_2628472_-	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_010930439.1|2628540_2629293_-	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_005012067.1|2629474_2630425_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446216.1|2631317_2632223_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994740.1|2632240_2633362_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_010930436.1|2633450_2634065_-	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930435.1|2634722_2635910_-	cupin	NA	NA	NA	NA	NA
WP_033446228.1|2635906_2638504_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930433.1|2638758_2638974_+	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_010930432.1|2639429_2639984_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_033446227.1|2640254_2640812_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_023853587.1|2640923_2642228_+	imelysin	NA	NA	NA	NA	NA
WP_019247498.1|2642224_2643736_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019248041.1|2643841_2644843_+	imelysin family protein	NA	NA	NA	NA	NA
WP_019249265.1|2644832_2645945_+	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2646043_2646994_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|2646990_2647617_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|2647676_2648528_+	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_033446226.1|2648694_2649231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930425.1|2649227_2649992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2650061_2651012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930424.1|2651110_2651719_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_010930423.1|2651769_2652096_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_023995689.1|2652142_2654368_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930421.1|2655034_2658439_-	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_010930420.1|2658451_2661112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004568212.1|2661133_2661280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930419.1|2661315_2662518_-	MFS transporter	NA	NA	NA	NA	NA
WP_023994932.1|2663204_2664317_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_005012067.1|2664323_2665274_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	2693319	2757275	4257407	transposase,tRNA	Salmonella_phage(16.67%)	60	NA	NA
WP_005012067.1|2693319_2694270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2694368_2695139_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2695135_2695807_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2695803_2696445_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2696457_2697378_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2697538_2698699_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2698740_2699691_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2700289_2700514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162832303.1|2700678_2702412_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2702494_2702764_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2702879_2703278_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2703288_2704245_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2704381_2704927_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2704947_2706897_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2707284_2708061_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2708066_2708459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2708880_2709831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2709827_2710925_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005012067.1|2710956_2711907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2712005_2712788_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2712876_2714103_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2714828_2716214_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2716232_2716838_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2716834_2718691_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2718687_2719488_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2719502_2720696_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2720763_2721738_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2721860_2723084_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2723194_2725399_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2725693_2726353_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2726360_2726567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2726905_2727661_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2727676_2727838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2727931_2728447_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2728719_2729037_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2729224_2729461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2729751_2731107_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2731153_2732494_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2732595_2733228_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2733227_2735597_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2735629_2736589_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2736575_2737262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2737258_2737591_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2737706_2738657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2738653_2740720_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2740719_2740992_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2741686_2741776_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2741775_2743560_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2743583_2745749_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2745759_2746359_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2749180_2749876_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2749884_2750835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015028.1|2750933_2752175_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_003814057.1|2752324_2753305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814059.1|2753503_2754760_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814061.1|2754962_2755388_+	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814063.1|2755429_2755792_-	cytochrome c	NA	NA	NA	NA	NA
WP_003814065.1|2755804_2756158_-	cytochrome c	NA	NA	NA	NA	NA
WP_162497923.1|2756154_2756307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2756324_2757275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	2836952	2877620	4257407	transposase,tRNA	Salmonella_phage(33.33%)	43	NA	NA
WP_010929591.1|2836952_2837903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2838013_2838196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2838295_2838892_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2839075_2840167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2840666_2841077_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2841135_2841465_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2841482_2843900_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2843912_2844935_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2845009_2845369_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2845384_2845582_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2845917_2846868_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2847062_2847512_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2847508_2848459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2848569_2850018_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2850132_2850378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2850517_2851468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2851712_2852426_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2852548_2852776_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2853070_2853709_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2853817_2854852_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2854848_2855799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2856214_2856739_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2856742_2857012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2857210_2858272_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2858355_2859990_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2859991_2860795_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2860823_2861783_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2861786_2863301_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2863337_2864342_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_033456131.1|2864349_2864583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2864772_2865243_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2865278_2865890_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2865920_2866544_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2866624_2868157_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2868191_2869409_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2869476_2870508_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2870504_2871674_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2871667_2872348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2872509_2873352_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2873514_2874486_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2874657_2875536_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2875558_2876629_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2876669_2877620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	2933085	3005956	4257407	transposase,tRNA	Moraxella_phage(14.29%)	59	NA	NA
WP_003810909.1|2933085_2933502_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2933612_2934245_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2934273_2934717_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2934738_2935830_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_162832304.1|2935884_2936676_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2936820_2937441_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2937580_2938054_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2939193_2940144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2940140_2947802_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2948042_2952089_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_023853219.1|2952446_2952983_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2952979_2954278_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2954357_2955386_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|2955646_2956597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2956593_2957544_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2957861_2958467_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2958520_2959834_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2959908_2960379_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2960378_2961167_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2961177_2962830_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2962917_2963868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853125.1|2963854_2965018_-	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	V5UTY8	Synechococcus_phage	46.7	5.9e-10
WP_010931075.1|2965029_2965536_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2965532_2966297_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2966312_2966597_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2966661_2967651_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2967822_2968752_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2968723_2969410_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2969443_2969989_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2970033_2971299_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2971295_2972198_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2973379_2974324_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2974418_2975936_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2975977_2977606_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2977713_2978595_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2981707_2982082_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2982106_2982445_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2982488_2984123_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2984161_2985508_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2985615_2987037_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2987106_2987691_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2987793_2988744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2988878_2989985_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2989995_2991093_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2991237_2992443_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2992449_2992971_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2992967_2993450_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2993455_2993707_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2993687_2994173_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2994308_2997770_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2997787_2998672_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2998681_2999113_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2999359_2999863_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2999940_3001341_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|3001415_3002291_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|3002287_3003295_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|3003762_3004068_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|3004158_3004749_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|3004939_3005956_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	3009099	3075909	4257407	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_010929956.1|3009099_3010050_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3010148_3011099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|3011095_3011890_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|3011921_3012626_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|3012700_3013501_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|3013497_3013905_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|3013901_3014543_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|3014535_3016536_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|3017796_3019128_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|3019124_3020075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|3021781_3022048_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|3022755_3023094_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|3027646_3028249_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|3028345_3029635_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|3029692_3030424_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|3030420_3031224_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|3031220_3032309_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|3032305_3033235_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|3033383_3034529_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|3034550_3035501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|3035518_3035677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|3035831_3039653_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|3039809_3040478_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|3040482_3042156_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|3042174_3043494_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|3043498_3045814_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|3045869_3048038_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|3048034_3053215_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|3053313_3053628_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|3053855_3054101_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|3054195_3054714_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|3054813_3056019_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|3056134_3057532_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|3057648_3058227_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|3058299_3059691_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|3059858_3060809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|3061089_3061710_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|3061706_3062120_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|3062116_3063160_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|3063215_3063404_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|3063413_3064178_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|3064268_3064925_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|3065016_3065775_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|3065800_3067402_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|3067602_3068607_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|3068707_3068971_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_023853341.1|3069088_3069856_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|3070455_3071406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_151243721.1|3073789_3074887_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|3074958_3075909_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	3106295	3145484	4257407	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|3106295_3107246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|3107263_3107413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|3107366_3108263_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3110540_3112766_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3112930_3114019_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3113975_3114629_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3114676_3115474_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3116005_3116956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|3117036_3118185_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3118241_3119192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3119290_3119596_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3119624_3120059_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3120060_3121305_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3121301_3122012_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3122026_3122938_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|3123300_3123705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3123701_3124160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|3124166_3125075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|3125071_3125938_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3125924_3126752_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3126762_3127890_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3128967_3130206_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3130247_3131510_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3131516_3132269_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3132320_3132506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3132781_3133246_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_023996698.1|3133325_3133937_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3134081_3136190_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3136186_3137137_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3137240_3137861_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3137964_3138705_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3139839_3140964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3141009_3141378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3141619_3142570_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3143605_3144148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|3144345_3144516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3144533_3145484_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	3334434	3407422	4257407	holin,transposase,tRNA	Xanthomonas_phage(14.29%)	60	NA	NA
WP_005012067.1|3334434_3335385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3335393_3335942_+	lipid IV(A) palmitoyltransferase PagP	NA	NA	NA	NA	NA
WP_003814557.1|3335938_3336547_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852720.1|3336729_3337188_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3337206_3338466_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3338518_3339331_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3339445_3340000_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_023998380.1|3340009_3340999_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3341178_3341898_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3341914_3344650_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3344829_3345816_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_010931255.1|3345944_3346352_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3346463_3347387_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3347615_3348800_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3348988_3350215_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3350219_3351041_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3351053_3352004_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3352000_3353407_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3353403_3354477_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3354473_3355667_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3355663_3357196_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3357192_3358362_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3358351_3361189_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3361185_3362916_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3362912_3363191_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3363190_3364285_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3364293_3364722_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3365524_3367333_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3367372_3368452_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3368448_3369642_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3369791_3370070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023995307.1|3370399_3370765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3377516_3377993_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3378145_3379258_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3379325_3379886_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3379909_3380242_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3380225_3381914_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3382033_3382822_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3383529_3384480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3384924_3385236_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3385235_3385766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162268687.1|3385722_3385911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3385928_3386879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3387168_3387633_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3387647_3389153_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3389406_3391014_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3391069_3391975_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3392415_3393366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|3393504_3394257_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|3394531_3396220_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_023995245.1|3396308_3397499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931274.1|3397513_3398608_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|3398604_3400668_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|3400743_3401424_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|3401701_3403075_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|3403076_3404096_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|3404159_3405131_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|3405195_3406146_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|3406244_3407087_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|3407086_3407422_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 30
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	3425845	3479253	4257407	transposase,protease,integrase	Erwinia_phage(25.0%)	41	3464919:3464937	3484807:3484825
WP_010931291.1|3425845_3426385_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|3426406_3427741_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|3427754_3428060_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|3428484_3429066_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|3429147_3430098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|3430196_3431147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3431459_3432938_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3432944_3434054_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3434065_3434746_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3434767_3435523_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3435658_3436543_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3436630_3437212_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3437472_3437772_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3437923_3438403_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3439122_3440559_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010931297.1|3440555_3440984_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3441074_3442025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3442552_3443326_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3443458_3444469_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3444620_3446276_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3446330_3446672_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3446685_3448125_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3448257_3449073_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023994811.1|3449036_3449249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3449266_3450217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247274.1|3451610_3452552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3452778_3453519_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3453604_3454555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162291319.1|3454572_3454728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3455996_3457568_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247178.1|3459797_3462362_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3462780_3463731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3463829_3464780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
3464919:3464937	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_077274087.1|3467645_3468140_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_005013747.1|3468156_3469107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879586.1|3469093_3469294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931301.1|3469290_3470502_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3470517_3473469_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_019247951.1|3473470_3476227_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3476737_3477784_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3478125_3479253_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
3484807:3484825	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 31
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	3531010	3651254	4257407	transposase,tRNA	Acinetobacter_phage(20.0%)	101	NA	NA
WP_023995489.1|3531010_3531961_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3532365_3533010_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3533034_3533619_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3533719_3534337_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3534339_3536055_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3536051_3536360_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3536376_3536994_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3537038_3537341_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3537441_3538296_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3538483_3538708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3538877_3539150_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3539567_3539975_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3540344_3541139_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3541239_3542475_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3542543_3543560_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3543571_3544948_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3544944_3546141_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3546137_3547676_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3547672_3548932_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3550872_3551823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3552589_3553684_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3553676_3555011_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3554964_3555648_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3555673_3556837_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3556833_3557835_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3557834_3558707_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3558703_3559453_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3559449_3560241_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3560237_3561377_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3561652_3562438_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3562471_3563254_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3563257_3563647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3564786_3565650_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3565685_3566774_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3566770_3567721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3568074_3571053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3571979_3572858_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3573924_3574875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3575855_3576806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3576802_3577270_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3577312_3578083_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3578103_3578904_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3578914_3580324_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3580418_3581204_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_023994644.1|3581443_3582460_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3582567_3582960_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3583097_3583778_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3583782_3584754_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3584849_3585800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3587304_3588006_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3588005_3589430_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931360.1|3589446_3590502_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010931361.1|3590498_3591839_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3591954_3593718_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3593829_3594708_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3594820_3595636_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3595639_3595891_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3595975_3596992_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3597322_3597544_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931364.1|3599904_3600771_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3601319_3602528_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3602607_3604179_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3604296_3605232_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3605420_3606365_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3606932_3612650_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3612655_3613783_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3613838_3614465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3614736_3615753_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3615848_3616559_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3616555_3617545_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3617640_3619272_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3619274_3620012_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3620167_3621040_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3621389_3622529_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3622525_3623185_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3623256_3623889_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3623918_3624437_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3624447_3625557_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3625603_3626458_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3626459_3627362_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3628584_3629535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3631291_3632281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3632277_3632436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3632456_3633245_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3633241_3634273_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3634291_3634855_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3634910_3636431_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3636694_3637399_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3637406_3638135_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3638249_3638624_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3638666_3639956_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3639952_3641122_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3641118_3641958_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3642017_3642953_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3642965_3643916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3644014_3644977_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3645008_3645368_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3645492_3646395_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3646396_3648169_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3648203_3648980_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_080485501.1|3650303_3651254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	3666192	3724264	4257407	transposase,tRNA	Planktothrix_phage(12.5%)	46	NA	NA
WP_010929584.1|3666192_3667143_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3667271_3668405_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3668448_3669354_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3669356_3671057_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3671053_3671974_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3671981_3672959_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852626.1|3673017_3673977_-	succinylglutamate desuccinylase/aspartoacylase	NA	NA	NA	NA	NA
WP_003815317.1|3676026_3676263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3676389_3677253_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3677341_3678163_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3678242_3678980_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3678976_3679969_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3680121_3680745_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3680789_3681938_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3684261_3685212_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3685552_3686503_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3686601_3687552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3687848_3688346_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3688388_3690164_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3690171_3691038_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931405.1|3691044_3691770_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815296.1|3694031_3694622_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3694655_3695984_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3696058_3697204_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3697315_3698314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3698276_3698711_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3700227_3701112_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3701108_3702314_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3702310_3703171_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3703283_3705074_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_023852857.1|3705114_3705765_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
WP_010929971.1|3705780_3706089_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3706254_3707541_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3708974_3709925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3711876_3713091_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3713196_3714186_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3714182_3714791_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3714803_3715433_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3715429_3716050_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3716081_3716873_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3717724_3718180_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3718198_3719125_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3719178_3720465_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3721395_3722268_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3722264_3723215_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3723313_3724264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 34
NZ_CP017404	Bordetella pertussis strain 6229 chromosome, complete genome	4257407	4156475	4221387	4257407	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4156475_4156961_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4157049_4157187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4157179_4158160_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4158426_4159236_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4159275_4159956_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4159949_4160408_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4160419_4160782_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4160864_4161548_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4161603_4161912_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4161930_4162245_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4162241_4164716_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4164723_4166115_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4166111_4166297_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4166275_4166977_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4166973_4167795_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4167775_4168900_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4168892_4169912_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4170117_4171008_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010931657.1|4171150_4172044_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4172126_4172501_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4172478_4173888_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4173880_4175263_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4175597_4177202_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4177279_4178251_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4178261_4179188_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_077069022.1|4179578_4180529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4180698_4181925_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4182124_4182991_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4182983_4183946_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4184046_4184997_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|4185095_4186046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4186144_4187095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4187091_4188585_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4188581_4191689_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4191685_4194754_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4194750_4196001_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4196181_4196934_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4196975_4197620_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4197628_4198468_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4198708_4199452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4199534_4199882_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4199979_4200822_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4200866_4201754_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4201780_4201969_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4202066_4203524_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4203510_4205037_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4205055_4205523_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4205522_4206545_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4206665_4207406_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4207460_4208561_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4208562_4209753_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4209872_4210889_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4211207_4211879_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4211875_4212784_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4212995_4213643_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4217503_4218571_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4218581_4219391_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4219480_4220254_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4220254_4220419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4220436_4221387_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
