The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017483	Stenotrophomonas sp. LM091 chromosome, complete genome	4317450	1460429	1509137	4317450	plate,holin,protease	Klosneuvirus(25.0%)	45	NA	NA
WP_070425904.1|1460429_1461767_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_156785697.1|1461770_1462541_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_070425906.1|1462611_1463898_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_070425907.1|1463894_1464917_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_070425908.1|1464880_1466647_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_070425909.1|1466653_1467082_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_070425910.1|1467094_1468573_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_070425911.1|1468605_1469118_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_026069868.1|1469667_1470921_-	flavohemoglobin expression-modulating QEGLA motif protein	NA	NA	NA	NA	NA
WP_070425912.1|1470940_1472047_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019183771.1|1472223_1473498_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_070427467.1|1474134_1474818_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_046273503.1|1474886_1475258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046273502.1|1475293_1475617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070425913.1|1475647_1476424_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_070425914.1|1476482_1477409_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_019183764.1|1477485_1478025_-	DUF924 family protein	NA	A0A1V0SIY0	Klosneuvirus	35.1	2.1e-18
WP_019183763.1|1478077_1478854_-	AMP nucleosidase	NA	NA	NA	NA	NA
WP_070425915.1|1478964_1482546_-|protease	autotransporter serine protease	protease	NA	NA	NA	NA
WP_070425916.1|1482798_1484205_+	amidohydrolase	NA	NA	NA	NA	NA
WP_070425917.1|1484201_1485482_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_156785804.1|1485554_1486187_+	DsbA family protein	NA	NA	NA	NA	NA
WP_046273496.1|1486277_1487222_+	DegV family protein	NA	NA	NA	NA	NA
WP_026069862.1|1487334_1487673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083279805.1|1487645_1489151_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_070425919.1|1489147_1490203_-	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_070425920.1|1490220_1491762_-	MFS transporter	NA	NA	NA	NA	NA
WP_046273490.1|1491942_1492857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_070425921.1|1493005_1493452_+	universal stress protein	NA	NA	NA	NA	NA
WP_070425922.1|1493572_1494403_-	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_019183748.1|1494451_1495561_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.1	7.3e-34
WP_019183747.1|1495616_1495892_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA	NA
WP_156785699.1|1495977_1496394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019183745.1|1496497_1497382_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019183744.1|1497488_1498547_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	45.4	2.1e-83
WP_046273486.1|1498610_1499975_-	glutamate--cysteine ligase	NA	NA	NA	NA	NA
WP_070425924.1|1500182_1500881_+	VIT family protein	NA	NA	NA	NA	NA
WP_019183741.1|1500884_1501718_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_070425925.1|1501813_1502791_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019183739.1|1502946_1503570_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_070425926.1|1503725_1504523_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_019183737.1|1504652_1505297_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_070425927.1|1505419_1506247_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_172838073.1|1506297_1507035_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_019183734.1|1507157_1509137_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	26.4	3.4e-18
>prophage 2
NZ_CP017483	Stenotrophomonas sp. LM091 chromosome, complete genome	4317450	2736300	2748568	4317450		Enterobacteria_phage(37.5%)	13	NA	NA
WP_070426565.1|2736300_2737257_-	glycosyltransferase family 2 protein	NA	B9UDL7	Salmonella_phage	28.9	8.2e-26
WP_046273791.1|2737246_2737942_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_046273792.1|2738120_2739062_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_070426566.1|2739061_2739808_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_070426567.1|2740068_2741124_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.5	3.7e-80
WP_070426568.1|2741155_2742043_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	58.1	1.4e-96
WP_070426569.1|2742039_2742597_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	51.9	2.2e-47
WP_070426570.1|2742593_2743484_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.5	9.9e-26
WP_070426571.1|2743621_2745025_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.1	1.7e-48
WP_070426572.1|2745040_2746390_-	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	28.1	3.0e-34
WP_070426573.1|2746550_2747285_+	CoA transferase subunit A	NA	NA	NA	NA	NA
WP_019182572.1|2747286_2747919_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_070426574.1|2747977_2748568_+	alpha-ketoglutarate-dependent dioxygenase AlkB	NA	A0A2K9L0M4	Tupanvirus	31.0	5.2e-23
>prophage 3
NZ_CP017483	Stenotrophomonas sp. LM091 chromosome, complete genome	4317450	3646826	3721918	4317450	tRNA,integrase,tail,capsid,portal,protease,terminase,head,lysis	Pseudomonas_phage(22.86%)	94	3646402:3646448	3688507:3688553
3646402:3646448	attL	GGACTGCAAATCCGCGTACGCCGGTTCAATTCCGACCCAGGCCTCCA	NA	NA	NA	NA
WP_070427018.1|3646826_3647852_-|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	59.0	1.8e-103
WP_070427019.1|3647853_3648066_-	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	61.4	1.2e-17
WP_070427020.1|3648055_3648355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070427021.1|3648351_3648537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070427022.1|3648536_3650546_-	DNA cytosine methyltransferase	NA	Q5QF27	Pseudomonas_virus	48.0	3.5e-159
WP_070427023.1|3650983_3651574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156785761.1|3651570_3652287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070427025.1|3652283_3652823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070427026.1|3652815_3652998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070427027.1|3653116_3653353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070427028.1|3653349_3653589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172838056.1|3653785_3654307_-	DUF4468 domain-containing protein	NA	A0A0P0I8L3	Acinetobacter_phage	31.0	7.9e-15
WP_070427574.1|3654319_3654994_-	helix-turn-helix transcriptional regulator	NA	A0A1B0VRI7	Pseudomonas_phage	25.4	1.0e-06
WP_156785762.1|3655067_3655541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427031.1|3655610_3656192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427032.1|3656188_3656500_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_070427033.1|3656503_3657391_+	helix-turn-helix domain-containing protein	NA	A0A0U4IBP5	Pseudomonas_phage	40.9	2.1e-28
WP_070427034.1|3657380_3658034_+	hypothetical protein	NA	A0A1B0VMD9	Pseudomonas_phage	37.2	2.5e-26
WP_070427035.1|3658033_3658282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427036.1|3658278_3659181_+	hypothetical protein	NA	K4JTF2	Caulobacter_virus	46.1	7.9e-63
WP_070427037.1|3659190_3659640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156785763.1|3659636_3659870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427039.1|3659869_3660238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427040.1|3660234_3660735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427041.1|3660731_3661163_+	HD domain-containing protein	NA	D0UIJ3	Aggregatibacter_phage	37.6	4.4e-11
WP_070427042.1|3661159_3661564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427043.1|3661547_3662243_+	hypothetical protein	NA	C8CLH7	Xylella_phage	58.5	9.7e-69
WP_070427044.1|3662306_3662852_+	YfbU family protein	NA	NA	NA	NA	NA
WP_070427045.1|3663002_3663491_+	glycoside hydrolase family 104 protein	NA	D5LH07	Escherichia_phage	78.4	5.2e-69
WP_070427046.1|3663487_3663805_+	hypothetical protein	NA	B7SYE0	Stenotrophomonas_phage	68.7	4.3e-32
WP_070427047.1|3663804_3664275_+|lysis	lysis protein	lysis	NA	NA	NA	NA
WP_070427048.1|3664271_3664496_+	hypothetical protein	NA	A0A1V0E8A3	Vibrio_phage	41.8	3.7e-06
WP_172838057.1|3664495_3664657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427049.1|3664656_3665013_+	HNH endonuclease	NA	A0A2D1GNP5	Pseudomonas_phage	52.8	4.0e-26
WP_070427050.1|3665174_3665603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083279881.1|3665595_3667287_+|terminase	terminase large subunit	terminase	A0A0U4B0M7	Pseudomonas_phage	64.4	4.6e-213
WP_070427052.1|3667283_3668576_+|portal	phage portal protein	portal	G0ZT36	Aeromonas_phage	62.5	7.4e-147
WP_070427053.1|3668579_3669446_+|protease	Clp protease ClpP	protease	A0A0U4B0F3	Pseudomonas_phage	51.9	3.0e-75
WP_070427054.1|3669457_3670669_+|capsid	phage major capsid protein	capsid	A0A2H4PI18	Pseudomonas_phage	61.9	4.2e-128
WP_070427055.1|3670723_3671083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427056.1|3671086_3671428_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q6JIM5	Burkholderia_virus	51.8	1.8e-23
WP_070427057.1|3671490_3671694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427575.1|3671693_3672026_+|head	phage head closure protein	head	K7PH08	Enterobacteria_phage	66.4	6.7e-36
WP_070427058.1|3672018_3672555_+	HK97 gp10 family phage protein	NA	A0A286S249	Klebsiella_phage	47.1	5.2e-38
WP_070427059.1|3672551_3672917_+	DUF3168 domain-containing protein	NA	A0A286S1R1	Klebsiella_phage	57.9	2.3e-37
WP_070427060.1|3672987_3673704_+|tail	phage tail protein	tail	Q9MCU9	Escherichia_phage	42.9	4.5e-45
WP_083279882.1|3673700_3674120_+|tail	phage tail assembly chaperone family protein, TAC	tail	K7PJU9	Enterobacteria_phage	65.5	2.9e-36
WP_070427061.1|3674149_3674416_+|tail	phage tail protein	tail	Q9MCU7	Escherichia_phage	56.5	8.3e-21
WP_070427062.1|3674422_3676921_+|tail	phage tail length tape measure family protein	tail	A0A286S1S3	Klebsiella_phage	24.9	3.4e-31
WP_083279883.1|3676920_3677379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427577.1|3677375_3677858_+	DUF1833 family protein	NA	A0A286S2B1	Klebsiella_phage	63.1	3.7e-51
WP_070427063.1|3677854_3678232_+	hypothetical protein	NA	A0A286S2A6	Klebsiella_phage	45.9	1.4e-24
WP_156785764.1|3678228_3681156_+	kinase	NA	A0A286S259	Klebsiella_phage	48.8	4.4e-248
WP_156785765.1|3681316_3684124_+	hypothetical protein	NA	J7HXC9	Pseudomonas_phage	25.7	4.1e-09
WP_070427065.1|3684107_3685244_-	acyltransferase	NA	NA	NA	NA	NA
WP_070427066.1|3685310_3685976_-	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	79.2	4.3e-98
WP_070427067.1|3686083_3686434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427068.1|3686665_3686968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156785766.1|3687586_3688291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427071.1|3688685_3690185_+	AAA family ATPase	NA	NA	NA	NA	NA
3688507:3688553	attR	GGACTGCAAATCCGCGTACGCCGGTTCAATTCCGACCCAGGCCTCCA	NA	NA	NA	NA
WP_083279886.1|3690198_3692229_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_070427073.1|3692380_3692842_+	BLUF domain-containing protein	NA	NA	NA	NA	NA
WP_019183363.1|3693122_3693371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427578.1|3693425_3694439_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_070427074.1|3694513_3694807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037553174.1|3694995_3695433_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_070427075.1|3695477_3696887_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_070427076.1|3697266_3698280_+	TraB/GumN family protein	NA	NA	NA	NA	NA
WP_070427077.1|3698389_3698845_+	BLUF domain-containing protein	NA	NA	NA	NA	NA
WP_070427078.1|3699148_3700435_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA	NA
WP_019183355.1|3700466_3702089_+	FMN-binding glutamate synthase family protein	NA	NA	NA	NA	NA
WP_156785767.1|3702085_3702565_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_070427079.1|3702669_3703917_-	TIGR03862 family flavoprotein	NA	NA	NA	NA	NA
WP_019183352.1|3703927_3704368_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019183351.1|3704435_3704801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046273691.1|3704850_3705603_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_070427080.1|3705741_3706734_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_070427081.1|3706831_3707341_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_019183347.1|3707439_3708099_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_026069803.1|3708082_3709393_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_019183345.1|3709674_3710301_+	DUF47 family protein	NA	NA	NA	NA	NA
WP_019183344.1|3710314_3711436_+	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_070427580.1|3711553_3712141_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_046273688.1|3712249_3714139_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	34.8	6.5e-91
WP_070427082.1|3714302_3714542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156785768.1|3714663_3714924_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427084.1|3714920_3716585_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	48.6	8.6e-140
WP_019183338.1|3716690_3717521_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.7	7.5e-52
WP_026069801.1|3717517_3717934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_070427085.1|3718003_3719290_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	60.3	4.6e-141
WP_019183335.1|3719294_3719645_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_026069800.1|3719641_3720340_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_019183333.1|3720377_3720875_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_070427086.1|3720871_3721918_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
