assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001806285.1_ASM180628v1	NZ_CP017251	Escherichia coli strain NADC 5570/86-24/6564 isolate wild type chromosome, complete genome	1	1047269-1047357	1	CRISPRCasFinder	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG,WYL	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACC	28	0	0	NA	NA	I-E	1	1	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG,WYL,RT	NA,NA	NA|83aa|up_9|NZ_CP017251.1_1037745_1037994_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_8|NZ_CP017251.1_1037993_1038329_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_7|NZ_CP017251.1_1038399_1039191_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP017251.1_1039418_1041056_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP017251.1_1041143_1042442_+	PRK00077, eno, enolase; Provisional	NA|305aa|up_4|NZ_CP017251.1_1042501_1043416_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP017251.1_1043412_1044561_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|225aa|up_2|NZ_CP017251.1_1044794_1045469_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|207aa|up_1|NZ_CP017251.1_1045482_1046103_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP017251.1_1046257_1046929_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP017251.1_1047992_1049471_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP017251.1_1049497_1050775_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP017251.1_1051093_1051879_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP017251.1_1051948_1053403_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|260aa|down_4|NZ_CP017251.1_1054810_1055590_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|192aa|down_5|NZ_CP017251.1_1056594_1057170_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_6|NZ_CP017251.1_1057186_1057447_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_7|NZ_CP017251.1_1057437_1058709_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_8|NZ_CP017251.1_1058786_1059152_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_9|NZ_CP017251.1_1059467_1061267_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
GCF_001806285.1_ASM180628v1	NZ_CP017251	Escherichia coli strain NADC 5570/86-24/6564 isolate wild type chromosome, complete genome	2	1073049-1073261	1,1,2	PILER-CR,CRT,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG,WYL	Type I-E	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,30,29	0	0	NA	NA	I-E:I-E:I-E	2,3,3	3	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG,WYL,RT	NA,NA	NA|245aa|up_9|NZ_CP017251.1_1063052_1063787_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP017251.1_1064050_1064203_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP017251.1_1064394_1067094_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP017251.1_1067191_1068754_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP017251.1_1068750_1069287_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP017251.1_1069298_1070354_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP017251.1_1070364_1071111_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP017251.1_1071092_1071743_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP017251.1_1071739_1072663_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP017251.1_1072659_1072953_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP017251.1_1073342_1074380_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP017251.1_1074631_1075540_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP017251.1_1075541_1076969_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP017251.1_1076968_1077574_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP017251.1_1077623_1077947_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP017251.1_1078140_1078452_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP017251.1_1078470_1079181_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP017251.1_1079180_1079660_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP017251.1_1079656_1080706_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP017251.1_1080686_1081448_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001806285.1_ASM180628v1	NZ_CP017251	Escherichia coli strain NADC 5570/86-24/6564 isolate wild type chromosome, complete genome	3	1597139-1597244	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG,WYL	Orphan	CCGAGCCGTAGGCCGGATTAGGCGTT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG,WYL,RT	NA|357aa|up_5|NZ_CP017251.1_1591118_1592189_-,NA	NA|420aa|up_9|NZ_CP017251.1_1585305_1586565_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_8|NZ_CP017251.1_1586554_1588183_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_7|NZ_CP017251.1_1588455_1589814_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_6|NZ_CP017251.1_1589818_1590895_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|357aa|up_5|NZ_CP017251.1_1591118_1592189_-	NA	NA|293aa|up_4|NZ_CP017251.1_1592652_1593531_-	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|397aa|up_3|NZ_CP017251.1_1593682_1594873_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|217aa|up_2|NZ_CP017251.1_1594953_1595604_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP017251.1_1595657_1595912_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP017251.1_1595911_1597042_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP017251.1_1597268_1599554_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP017251.1_1600249_1604002_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP017251.1_1604142_1604865_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP017251.1_1605011_1607639_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|543aa|down_4|NZ_CP017251.1_1607846_1609475_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP017251.1_1609471_1610095_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP017251.1_1610238_1614633_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|259aa|down_7|NZ_CP017251.1_1616287_1617064_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|950aa|down_8|NZ_CP017251.1_1617338_1620188_+	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|217aa|down_9|NZ_CP017251.1_1620387_1621038_-	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional
GCF_001806285.1_ASM180628v1	NZ_CP017251	Escherichia coli strain NADC 5570/86-24/6564 isolate wild type chromosome, complete genome	4	4576772-4576906	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG,WYL	Orphan	GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG,WYL,RT	NA|190aa|up_7|NZ_CP017251.1_4567160_4567730_-,NA|251aa|down_4|NZ_CP017251.1_4584199_4584952_-	NA|44aa|up_9|NZ_CP017251.1_4565053_4565185_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|553aa|up_8|NZ_CP017251.1_4565273_4566932_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|190aa|up_7|NZ_CP017251.1_4567160_4567730_-	NA	NA|328aa|up_6|NZ_CP017251.1_4568101_4569085_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP017251.1_4569060_4570671_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP017251.1_4570654_4571353_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP017251.1_4571439_4572204_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP017251.1_4572289_4573168_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP017251.1_4573506_4575207_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP017251.1_4575217_4576720_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP017251.1_4576919_4577615_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP017251.1_4577689_4580041_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP017251.1_4580204_4583111_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP017251.1_4583122_4583782_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|251aa|down_4|NZ_CP017251.1_4584199_4584952_-	NA	NA|272aa|down_5|NZ_CP017251.1_4585246_4586062_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_6|NZ_CP017251.1_4586316_4588671_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_7|NZ_CP017251.1_4588723_4590010_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_8|NZ_CP017251.1_4590009_4590999_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_9|NZ_CP017251.1_4590995_4591817_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCF_001806285.1_ASM180628v1	NZ_CP017251	Escherichia coli strain NADC 5570/86-24/6564 isolate wild type chromosome, complete genome	5	4835729-4835878	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG,WYL	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG,WYL,RT	NA,NA|591aa|down_6|NZ_CP017251.1_4842975_4844748_-	NA|442aa|up_9|NZ_CP017251.1_4820858_4822184_-	TIGR03236, dnd_assoc_1, DNA phosphorothioation-dependent restriction protein DptG	NA|550aa|up_8|NZ_CP017251.1_4822188_4823838_-	TIGR03238, dnd_assoc_3, DNA phosphorothioation-dependent restriction protein DptF	NA|247aa|up_7|NZ_CP017251.1_4824450_4825191_+	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|500aa|up_6|NZ_CP017251.1_4825364_4826864_+	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|422aa|up_5|NZ_CP017251.1_4827187_4828453_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP017251.1_4828919_4829939_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP017251.1_4830068_4831571_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP017251.1_4831731_4832814_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP017251.1_4832813_4833914_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP017251.1_4834180_4835692_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP017251.1_4836045_4836489_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP017251.1_4836488_4839344_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP017251.1_4839398_4840595_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP017251.1_4840787_4841291_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP017251.1_4841336_4841753_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP017251.1_4841914_4842919_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|591aa|down_6|NZ_CP017251.1_4842975_4844748_-	NA	NA|151aa|down_7|NZ_CP017251.1_4844870_4845323_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP017251.1_4845467_4846061_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|238aa|down_9|NZ_CP017251.1_4846131_4846845_+	PRK12742, PRK12742, SDR family oxidoreductase
