assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001767335.1_ASM176733v1	NZ_CP016212	Pseudomonas putida JB chromosome, complete genome	1	721603-721701	1	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	GAGCGGGCTCACCCGCGAAAGGGCCGCAGAA	31	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA	NA|944aa|up_9|NZ_CP016212.1_713342_716174_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|172aa|up_8|NZ_CP016212.1_716166_716682_+	PRK00376, lspA, lipoprotein signal peptidase	NA|146aa|up_7|NZ_CP016212.1_716674_717112_+	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|316aa|up_6|NZ_CP016212.1_717126_718074_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|161aa|up_5|NZ_CP016212.1_718150_718633_-	pfam12019, GspH, Type II transport protein GspH	NA|61aa|up_4|NZ_CP016212.1_718742_718925_+	COG4967, PilV, Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion]	NA|215aa|up_3|NZ_CP016212.1_718921_719566_+	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion]	NA|155aa|up_2|NZ_CP016212.1_719562_720027_+	COG4726, PilX, Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]	NA|130aa|up_1|NZ_CP016212.1_720028_720418_+	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]	NA|366aa|up_0|NZ_CP016212.1_720472_721570_+	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|470aa|down_0|NZ_CP016212.1_721714_723124_-	PRK06169, PRK06169, putative amidase; Provisional	NA|422aa|down_1|NZ_CP016212.1_723125_724391_-	PRK12893, PRK12893, Zn-dependent hydrolase	NA|232aa|down_2|NZ_CP016212.1_724555_725251_-	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|251aa|down_3|NZ_CP016212.1_725250_726003_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|340aa|down_4|NZ_CP016212.1_726002_727022_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|287aa|down_5|NZ_CP016212.1_727023_727884_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|401aa|down_6|NZ_CP016212.1_727949_729152_-	cd20378, PBP1_SBP-like, periplasmic substrate-binding domain of active transport proteins	NA|255aa|down_7|NZ_CP016212.1_729242_730007_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|77aa|down_8|NZ_CP016212.1_730273_730504_-	PRK09459, pspG, envelope stress response protein PspG	NA|340aa|down_9|NZ_CP016212.1_730598_731618_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO
GCF_001767335.1_ASM176733v1	NZ_CP016212	Pseudomonas putida JB chromosome, complete genome	2	1819276-1819382	2	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	GCCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACG	39	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA	NA|253aa|up_9|NZ_CP016212.1_1807002_1807761_-	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional	NA|279aa|up_8|NZ_CP016212.1_1807762_1808599_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|572aa|up_7|NZ_CP016212.1_1808598_1810314_-	PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional	NA|944aa|up_6|NZ_CP016212.1_1810974_1813806_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|179aa|up_5|NZ_CP016212.1_1813798_1814335_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|404aa|up_4|NZ_CP016212.1_1814337_1815549_+	pfam00034, Cytochrom_C, Cytochrome c	NA|324aa|up_3|NZ_CP016212.1_1815552_1816524_+	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|188aa|up_2|NZ_CP016212.1_1816520_1817084_+	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|228aa|up_1|NZ_CP016212.1_1817264_1817948_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|441aa|up_0|NZ_CP016212.1_1817944_1819267_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|467aa|down_0|NZ_CP016212.1_1819532_1820933_+	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional	NA|328aa|down_1|NZ_CP016212.1_1821038_1822022_+	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	NA|2175aa|down_2|NZ_CP016212.1_1822177_1828702_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|2629aa|down_3|NZ_CP016212.1_1828703_1836590_+	PRK05691, PRK05691, peptide synthase; Validated	NA|3470aa|down_4|NZ_CP016212.1_1836750_1847160_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|319aa|down_5|NZ_CP016212.1_1847205_1848162_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|813aa|down_6|NZ_CP016212.1_1848230_1850669_-	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|553aa|down_7|NZ_CP016212.1_1850755_1852414_-	TIGR01194, ATP-binding_protein_SyrD, cyclic peptide transporter	NA|302aa|down_8|NZ_CP016212.1_1852448_1853354_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|429aa|down_9|NZ_CP016212.1_1853388_1854675_-	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
GCF_001767335.1_ASM176733v1	NZ_CP016212	Pseudomonas putida JB chromosome, complete genome	3	3623915-3624050	1	PILER-CR	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	CCGCACTTGCCTTCACCACACTTGCCCTCGC	31	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA|361aa|down_9|NZ_CP016212.1_3641344_3642427_+	NA|150aa|up_9|NZ_CP016212.1_3616321_3616771_+	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed	NA|283aa|up_8|NZ_CP016212.1_3616767_3617616_+	PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed	NA|172aa|up_7|NZ_CP016212.1_3617729_3618245_-	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|92aa|up_6|NZ_CP016212.1_3618255_3618531_-	pfam10976, DUF2790, Protein of unknown function (DUF2790)	NA|247aa|up_5|NZ_CP016212.1_3618751_3619492_+	PRK09468, ompR, osmolarity response regulator; Provisional	NA|429aa|up_4|NZ_CP016212.1_3619488_3620775_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|206aa|up_3|NZ_CP016212.1_3620938_3621556_+	pfam01794, Ferric_reduct, Ferric reductase like transmembrane component	NA|163aa|up_2|NZ_CP016212.1_3621570_3622059_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|232aa|up_1|NZ_CP016212.1_3622092_3622788_-	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|278aa|up_0|NZ_CP016212.1_3622780_3623614_-	PRK05409, PRK05409, hypothetical protein; Provisional	NA|184aa|down_0|NZ_CP016212.1_3624354_3624906_-	pfam13778, DUF4174, Domain of unknown function (DUF4174)	NA|1498aa|down_1|NZ_CP016212.1_3625133_3629627_-	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting	NA|1474aa|down_2|NZ_CP016212.1_3629724_3634146_-	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting	NA|787aa|down_3|NZ_CP016212.1_3634224_3636585_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|397aa|down_4|NZ_CP016212.1_3636651_3637842_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|289aa|down_5|NZ_CP016212.1_3637959_3638826_+	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|307aa|down_6|NZ_CP016212.1_3638806_3639727_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|263aa|down_7|NZ_CP016212.1_3639887_3640676_+	pfam08892, YqcI_YcgG, YqcI/YcgG family	NA|209aa|down_8|NZ_CP016212.1_3640678_3641305_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|361aa|down_9|NZ_CP016212.1_3641344_3642427_+	NA
GCF_001767335.1_ASM176733v1	NZ_CP016212	Pseudomonas putida JB chromosome, complete genome	4	4159061-4159220	2	PILER-CR	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	CCGGCCCTTTCGCGGGTTTACCCGCGAA	28	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA	NA|324aa|up_9|NZ_CP016212.1_4146282_4147254_-	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC	NA|145aa|up_8|NZ_CP016212.1_4147304_4147739_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|294aa|up_7|NZ_CP016212.1_4147843_4148725_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|180aa|up_6|NZ_CP016212.1_4148740_4149280_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|494aa|up_5|NZ_CP016212.1_4150517_4151999_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|352aa|up_4|NZ_CP016212.1_4152142_4153198_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|497aa|up_3|NZ_CP016212.1_4153247_4154738_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|672aa|up_2|NZ_CP016212.1_4154865_4156881_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|399aa|up_1|NZ_CP016212.1_4157166_4158363_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|134aa|up_0|NZ_CP016212.1_4158559_4158961_-	cd02234, cupin_BLR7677-like, Bradyrhizobium japonicum BLR7677 and related proteins, cupin domain	NA|187aa|down_0|NZ_CP016212.1_4159245_4159806_-	COG3816, COG3816, Uncharacterized protein conserved in bacteria [Function unknown]	NA|202aa|down_1|NZ_CP016212.1_4159816_4160422_-	pfam16105, DUF4823, Domain of unknown function (DUF4823)	NA|323aa|down_2|NZ_CP016212.1_4160488_4161457_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|212aa|down_3|NZ_CP016212.1_4161612_4162248_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|261aa|down_4|NZ_CP016212.1_4162730_4163513_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|329aa|down_5|NZ_CP016212.1_4163543_4164530_-	PRK05707, PRK05707, DNA polymerase III subunit delta'; Validated	NA|211aa|down_6|NZ_CP016212.1_4164522_4165155_-	PRK00698, tmk, thymidylate kinase; Validated	NA|412aa|down_7|NZ_CP016212.1_4165164_4166400_-	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism]	NA|272aa|down_8|NZ_CP016212.1_4166404_4167220_-	PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed	NA|415aa|down_9|NZ_CP016212.1_4167219_4168464_-	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II
GCF_001767335.1_ASM176733v1	NZ_CP016212	Pseudomonas putida JB chromosome, complete genome	5	4887491-4887644	3	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	TTTTTGCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGG	49	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA,NA|102aa|down_4|NZ_CP016212.1_4891147_4891453_-	NA|151aa|up_9|NZ_CP016212.1_4875311_4875764_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|287aa|up_8|NZ_CP016212.1_4875835_4876696_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|67aa|up_7|NZ_CP016212.1_4876706_4876907_-	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|726aa|up_6|NZ_CP016212.1_4876896_4879074_-	pfam04632, FUSC, Fusaric acid resistance protein family	NA|510aa|up_5|NZ_CP016212.1_4879070_4880600_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|316aa|up_4|NZ_CP016212.1_4880792_4881740_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|325aa|up_3|NZ_CP016212.1_4881917_4882892_+	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|301aa|up_2|NZ_CP016212.1_4883007_4883910_-	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|292aa|up_1|NZ_CP016212.1_4884095_4884971_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|797aa|up_0|NZ_CP016212.1_4885000_4887391_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|327aa|down_0|NZ_CP016212.1_4887689_4888670_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|192aa|down_1|NZ_CP016212.1_4888666_4889242_-	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|109aa|down_2|NZ_CP016212.1_4889247_4889574_-	pfam11804, DUF3325, Protein of unknown function (DUF3325)	NA|526aa|down_3|NZ_CP016212.1_4889573_4891151_-	pfam03929, PepSY_TM, PepSY-associated TM region	NA|102aa|down_4|NZ_CP016212.1_4891147_4891453_-	NA	NA|116aa|down_5|NZ_CP016212.1_4891709_4892057_+	pfam02482, Ribosomal_S30AE, Sigma 54 modulation protein / S30EA ribosomal protein	NA|97aa|down_6|NZ_CP016212.1_4892177_4892468_+	pfam12021, DUF3509, Protein of unknown function (DUF3509)	NA|157aa|down_7|NZ_CP016212.1_4892471_4892942_-	COG3223, COG3223, Predicted membrane protein [Function unknown]	NA|88aa|down_8|NZ_CP016212.1_4893682_4893946_+	pfam07130, YebG, YebG protein	NA|340aa|down_9|NZ_CP016212.1_4894001_4895021_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
GCF_001767335.1_ASM176733v1	NZ_CP016212	Pseudomonas putida JB chromosome, complete genome	6	5544171-5544279	4	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,DinG	Orphan	GTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCC	41	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,DinG	NA|162aa|up_9|NZ_CP016212.1_5532822_5533308_+,NA	NA|162aa|up_9|NZ_CP016212.1_5532822_5533308_+	NA	NA|533aa|up_8|NZ_CP016212.1_5533328_5534927_+	pfam00732, GMC_oxred_N, GMC oxidoreductase	NA|162aa|up_7|NZ_CP016212.1_5535039_5535525_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|84aa|up_6|NZ_CP016212.1_5535626_5535878_+	PRK07118, PRK07118, Fe-S cluster domain-containing protein	NA|271aa|up_5|NZ_CP016212.1_5536039_5536852_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|273aa|up_4|NZ_CP016212.1_5536855_5537674_-	COG1639, COG1639, Predicted signal transduction protein [Signal transduction mechanisms]	NA|399aa|up_3|NZ_CP016212.1_5537849_5539046_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|614aa|up_2|NZ_CP016212.1_5539316_5541158_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|352aa|up_1|NZ_CP016212.1_5541396_5542452_-	cd04309, HAD_PSP_eu, phosphoserine phosphatase eukaryotic-like, similar to human phosphoserine phosphatase	NA|464aa|up_0|NZ_CP016212.1_5542696_5544088_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|172aa|down_0|NZ_CP016212.1_5544287_5544803_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|464aa|down_1|NZ_CP016212.1_5544857_5546249_+	pfam11067, DUF2868, Protein of unknown function (DUF2868)	NA|455aa|down_2|NZ_CP016212.1_5546241_5547606_+	pfam11981, DUF3482, Domain of unknown function (DUF3482)	NA|342aa|down_3|NZ_CP016212.1_5548009_5549035_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|575aa|down_4|NZ_CP016212.1_5549053_5550778_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|353aa|down_5|NZ_CP016212.1_5550779_5551838_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|290aa|down_6|NZ_CP016212.1_5552069_5552939_-	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator	NA|755aa|down_7|NZ_CP016212.1_5552948_5555213_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	NA|165aa|down_8|NZ_CP016212.1_5555296_5555791_+	TIGR02047, putative_regulatory_protein, Cd(II)/Pb(II)-responsive transcriptional regulator	NA|324aa|down_9|NZ_CP016212.1_5555857_5556829_-	PRK13821, thyA, thymidylate synthase; Provisional
