assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001767275.1_ASM176727v1	NZ_CP015206	Pediococcus acidilactici strain ZPA017 chromosome, complete genome	1	800072-800228	1	PILER-CR	no		DEDDh,DinG,cas3,csa3,cas9,cas1,cas2,csn2	Orphan	ATCTCTTCGTCGCCTAGCTCCTCGACATTACTGTGAC	37	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,csa3,cas9,cas1,cas2,csn2	NA,NA|68aa|down_7|NZ_CP015206.1_813076_813280_+,NA|111aa|down_8|NZ_CP015206.1_813263_813596_+	NA|121aa|up_9|NZ_CP015206.1_789933_790296_-	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|282aa|up_8|NZ_CP015206.1_790296_791142_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|723aa|up_7|NZ_CP015206.1_791306_793475_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|523aa|up_6|NZ_CP015206.1_793578_795147_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|135aa|up_5|NZ_CP015206.1_795213_795618_-	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|377aa|up_4|NZ_CP015206.1_795693_796824_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|185aa|up_3|NZ_CP015206.1_796904_797459_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|272aa|up_2|NZ_CP015206.1_797551_798367_-	PRK14135, recX, recombination regulator RecX; Provisional	NA|153aa|up_1|NZ_CP015206.1_798419_798878_+	PRK07308, PRK07308, flavodoxin; Validated	NA|209aa|up_0|NZ_CP015206.1_799080_799707_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|398aa|down_0|NZ_CP015206.1_800823_802017_-	pfam04326, AlbA_2, Putative DNA-binding domain	NA|404aa|down_1|NZ_CP015206.1_802053_803265_-	pfam10544, T5orf172, T5orf172 domain	NA|651aa|down_2|NZ_CP015206.1_803257_805210_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|897aa|down_3|NZ_CP015206.1_805210_807901_-	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms]	NA|73aa|down_4|NZ_CP015206.1_807916_808135_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|871aa|down_5|NZ_CP015206.1_808149_810762_-	COG1204, COG1204, Superfamily II helicase [General function prediction only]	NA|173aa|down_6|NZ_CP015206.1_812460_812979_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|68aa|down_7|NZ_CP015206.1_813076_813280_+	NA	NA|111aa|down_8|NZ_CP015206.1_813263_813596_+	NA	NA|380aa|down_9|NZ_CP015206.1_813592_814732_+	pfam10926, DUF2800, Protein of unknown function (DUF2800)
GCF_001767275.1_ASM176727v1	NZ_CP015206	Pediococcus acidilactici strain ZPA017 chromosome, complete genome	2	1467371-1471994	1	CRT	no		DEDDh,DinG,cas3,csa3,cas9,cas1,cas2,csn2	Orphan	TCNGANTCNATNTCGAAGTCNA	22	33	126	1467393-1467430|1467393-1467430|1467393-1467430|1467393-1467430|1467393-1467430|1467393-1467430|1467393-1467430|1467393-1467430|1467393-1467430|1467393-1467430|1467393-1467430|1467561-1467592|1467561-1467592|1467561-1467592|1467561-1467592|1467561-1467592|1467561-1467592|1467723-1467760|1467723-1467760|1467723-1467760|1467723-1467760|1468083-1468120|1468083-1468120|1468083-1468120|1468203-1468240|1468203-1468240|1468203-1468240|1468425-1468456|1468479-1468516|1468479-1468516|1468479-1468516|1468479-1468516|1468599-1468636|1468599-1468636|1468599-1468636|1468599-1468636|1468599-1468636|1468713-1468744|1468713-1468744|1468713-1468744|1468713-1468744|1468713-1468744|1468713-1468744|1468713-1468744|1468713-1468744|1468713-1468744|1468821-1468858|1468821-1468858|1469055-1469086|1469055-1469086|1469055-1469086|1469055-1469086|1469055-1469086|1469055-1469086|1469055-1469086|1469055-1469086|1469055-1469086|1469055-1469086|1469055-1469086|1469055-1469086|1469055-1469086|1469109-1469146|1469109-1469146|1469109-1469146|1469109-1469146|1469109-1469146|1469109-1469146|1469169-1469206|1469169-1469206|1469169-1469206|1469169-1469206|1469169-1469206|1469169-1469206|1469229-1469260|1469229-1469260|1469229-1469260|1469229-1469260|1469229-1469260|1469397-1469428|1469397-1469428|1469397-1469428|1469451-1469488|1469451-1469488|1469451-1469488|1469451-1469488|1469451-1469488|1469571-1469608|1469571-1469608|1469571-1469608|1469571-1469608|1469571-1469608|1469571-1469608|1469631-1469662|1469631-1469662|1469631-1469662|1469919-1469956|1469919-1469956|1469919-1469956|1469919-1469956|1469919-1469956|1469919-1469956|1469979-1470010|1469979-1470010|1469979-1470010|1469979-1470010|1470141-1470178|1470483-1470520|1470483-1470520|1470483-1470520|1470543-1470574|1470543-1470574|1470543-1470574|1470543-1470574|1470987-1471048|1470987-1471048|1471071-1471138|1471071-1471138|1471311-1471348|1471455-1471492|1471599-1471630|1471599-1471630|1471653-1471690|1471713-1471744|1471767-1471798|1471881-1471912|1471935-1471972	NZ_CP015206.1_3666-3629|NZ_CP015206.1_13533-13570|NZ_CP015206.1_14613-14650|NZ_CP015206.1_2128667-2128704|NZ_CP015206.1_2129747-2129784|NZ_CP015206.1_1396-1359|NZ_CP015206.1_2024-1987|NZ_CP015206.1_15183-15220|NZ_CP015206.1_15813-15850|NZ_CP015206.1_2130317-2130354|NZ_CP015206.1_2130947-2130984|NZ_CP015206.1_2872-2841|NZ_CP015206.1_3159-3128|NZ_CP015206.1_14043-14074|NZ_CP015206.1_14331-14362|NZ_CP015206.1_2129177-2129208|NZ_CP015206.1_2129465-2129496|NZ_CP015206.1_2710-2673|NZ_CP015206.1_14493-14530|NZ_CP015206.1_1467027-1467064|NZ_CP015206.1_2129627-2129664|NZ_CP015206.1_1744-1707|NZ_CP015206.1_15465-15502|NZ_CP015206.1_2130599-2130636|NZ_CP015206.1_2985-2948|NZ_CP015206.1_14217-14254|NZ_CP015206.1_2129351-2129388|NZ_CP015206.1_1466709-1466740|NZ_CP015206.1_1467027-1467064|NZ_CP015206.1_2710-2673|NZ_CP015206.1_14493-14530|NZ_CP015206.1_2129627-2129664|NZ_CP015206.1_14613-14650|NZ_CP015206.1_2129747-2129784|NZ_CP015206.1_3666-3629|NZ_CP015206.1_13533-13570|NZ_CP015206.1_2128667-2128704|NZ_CP015206.1_5216-5185|NZ_CP015206.1_5606-5575|NZ_CP015206.1_6204-6173|NZ_CP015206.1_10977-11008|NZ_CP015206.1_11577-11608|NZ_CP015206.1_11967-11998|NZ_CP015206.1_2126111-2126142|NZ_CP015206.1_2126711-2126742|NZ_CP015206.1_2127101-2127132|NZ_CP015206.1_14835-14872|NZ_CP015206.1_2129969-2130006|NZ_CP015206.1_3795-3764|NZ_CP015206.1_13401-13432|NZ_CP015206.1_2128535-2128566|NZ_CP015206.1_2764-2733|NZ_CP015206.1_3819-3788|NZ_CP015206.1_4039-4008|NZ_CP015206.1_13155-13186|NZ_CP015206.1_13377-13408|NZ_CP015206.1_14439-14470|NZ_CP015206.1_16329-16360|NZ_CP015206.1_2128289-2128320|NZ_CP015206.1_2128511-2128542|NZ_CP015206.1_2129573-2129604|NZ_CP015206.1_2084-2047|NZ_CP015206.1_15123-15160|NZ_CP015206.1_2130257-2130294|NZ_CP015206.1_1455-1418|NZ_CP015206.1_15753-15790|NZ_CP015206.1_2130887-2130924|NZ_CP015206.1_1396-1359|NZ_CP015206.1_2024-1987|NZ_CP015206.1_15183-15220|NZ_CP015206.1_15813-15850|NZ_CP015206.1_2130317-2130354|NZ_CP015206.1_2130947-2130984|NZ_CP015206.1_3606-3575|NZ_CP015206.1_13593-13624|NZ_CP015206.1_15243-15274|NZ_CP015206.1_2128727-2128758|NZ_CP015206.1_2130377-2130408|NZ_CP015206.1_1798-1767|NZ_CP015206.1_15411-15442|NZ_CP015206.1_2130545-2130576|NZ_CP015206.1_1744-1707|NZ_CP015206.1_14835-14872|NZ_CP015206.1_15465-15502|NZ_CP015206.1_2129969-2130006|NZ_CP015206.1_2130599-2130636|NZ_CP015206.1_1623-1586|NZ_CP015206.1_15585-15622|NZ_CP015206.1_2130719-2130756|NZ_CP015206.1_2251-2214|NZ_CP015206.1_14955-14992|NZ_CP015206.1_2130089-2130126|NZ_CP015206.1_1563-1532|NZ_CP015206.1_15645-15676|NZ_CP015206.1_2130779-2130810|NZ_CP015206.1_1168-1131|NZ_CP015206.1_2251-2214|NZ_CP015206.1_14955-14992|NZ_CP015206.1_16041-16078|NZ_CP015206.1_2130089-2130126|NZ_CP015206.1_2131175-2131212|NZ_CP015206.1_828-797|NZ_CP015206.1_935-904|NZ_CP015206.1_16275-16306|NZ_CP015206.1_16383-16414|NZ_CP015206.1_1467027-1467064|NZ_CP015206.1_2251-2214|NZ_CP015206.1_14955-14992|NZ_CP015206.1_2130089-2130126|NZ_CP015206.1_828-797|NZ_CP015206.1_16383-16414|NZ_CP015206.1_935-904|NZ_CP015206.1_16275-16306|NZ_CP015206.1_208-147|NZ_CP015206.1_17001-17062|NZ_CP015206.1_125-58|NZ_CP015206.1_17085-17152|NZ_CP015206.1_17517-17554|NZ_CP015206.1_17661-17698|NZ_CP015206.1_17805-17836|NZ_CP015206.1_1467249-1467280|NZ_CP015206.1_17859-17896|NZ_CP015206.1_17919-17950|NZ_CP015206.1_18069-18100|NZ_CP015206.1_18069-18100|NZ_CP015206.1_18123-18160	NA	75	75	Orphan	DEDDh,DinG,cas3,csa3,cas9,cas1,cas2,csn2	NA|157aa|up_8|NZ_CP015206.1_1450860_1451331_+,NA|281aa|up_1|NZ_CP015206.1_1460797_1461640_+,NA|264aa|up_0|NZ_CP015206.1_1461654_1462446_+,NA|78aa|down_5|NZ_CP015206.1_1479148_1479382_-	NA|415aa|up_9|NZ_CP015206.1_1449591_1450836_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|157aa|up_8|NZ_CP015206.1_1450860_1451331_+	NA	NA|549aa|up_7|NZ_CP015206.1_1451603_1453250_+	pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST)	NA|252aa|up_6|NZ_CP015206.1_1453315_1454071_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|107aa|up_5|NZ_CP015206.1_1454217_1454538_+	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|151aa|up_4|NZ_CP015206.1_1454824_1455277_-	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|213aa|up_3|NZ_CP015206.1_1455400_1456039_+	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|1338aa|up_2|NZ_CP015206.1_1456461_1460475_+	PRK07735, PRK07735, NADH-quinone oxidoreductase subunit C	NA|281aa|up_1|NZ_CP015206.1_1460797_1461640_+	NA	NA|264aa|up_0|NZ_CP015206.1_1461654_1462446_+	NA	NA|116aa|down_0|NZ_CP015206.1_1473719_1474067_+	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891)	NA|95aa|down_1|NZ_CP015206.1_1474067_1474352_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|178aa|down_2|NZ_CP015206.1_1474547_1475081_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|424aa|down_3|NZ_CP015206.1_1475268_1476540_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|597aa|down_4|NZ_CP015206.1_1476957_1478748_-	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|78aa|down_5|NZ_CP015206.1_1479148_1479382_-	NA	NA|176aa|down_6|NZ_CP015206.1_1479399_1479927_-	pfam02674, Colicin_V, Colicin V production protein	NA|230aa|down_7|NZ_CP015206.1_1480322_1481012_+	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|227aa|down_8|NZ_CP015206.1_1481026_1481707_+	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|531aa|down_9|NZ_CP015206.1_1481854_1483447_+	PRK00701, PRK00701, divalent metal cation transporter MntH
GCF_001767275.1_ASM176727v1	NZ_CP015206	Pediococcus acidilactici strain ZPA017 chromosome, complete genome	3	1856880-1859093	1,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	DEDDh,DinG,cas3,csa3,cas9,cas1,cas2,csn2	Type II-C,Type II-B,Type II-A	GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC	36,36,36	0	0	NA	NA	NA:NA:NA	33,33,30	33	TypeII-C,TypeII-B,TypeII-A	DEDDh,DinG,cas3,csa3,cas9,cas1,cas2,csn2	NA,NA	NA|639aa|up_9|NZ_CP015206.1_1841079_1842996_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|518aa|up_8|NZ_CP015206.1_1843068_1844622_+	PRK00074, guaA, GMP synthase; Reviewed	NA|215aa|up_7|NZ_CP015206.1_1844905_1845550_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|470aa|up_6|NZ_CP015206.1_1845742_1847152_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|845aa|up_5|NZ_CP015206.1_1847178_1849713_+	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|194aa|up_4|NZ_CP015206.1_1849940_1850522_-	pfam10351, Apt1, Golgi-body localization protein domain	cas9|1358aa|up_3|NZ_CP015206.1_1850705_1854779_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP015206.1_1854994_1855900_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_CP015206.1_1855877_1856183_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_CP015206.1_1856179_1856851_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|216aa|down_0|NZ_CP015206.1_1860610_1861258_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|NZ_CP015206.1_1861447_1861732_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|NZ_CP015206.1_1861754_1863377_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|611aa|down_3|NZ_CP015206.1_1863676_1865509_+	pfam13520, AA_permease_2, Amino acid permease	NA|392aa|down_4|NZ_CP015206.1_1865730_1866906_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|213aa|down_5|NZ_CP015206.1_1866973_1867612_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|440aa|down_6|NZ_CP015206.1_1867643_1868963_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|129aa|down_7|NZ_CP015206.1_1869247_1869634_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|185aa|down_8|NZ_CP015206.1_1869762_1870317_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|788aa|down_9|NZ_CP015206.1_1870465_1872829_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed
GCF_001767275.1_ASM176727v1	NZ_CP015206	Pediococcus acidilactici strain ZPA017 chromosome, complete genome	4	2089962-2090065	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas9,cas1,cas2,csn2	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,cas9,cas1,cas2,csn2	NA|85aa|up_9|NZ_CP015206.1_2073352_2073607_+,NA|63aa|up_6|NZ_CP015206.1_2077849_2078038_+,NA|244aa|down_0|NZ_CP015206.1_2091982_2092714_-	NA|85aa|up_9|NZ_CP015206.1_2073352_2073607_+	NA	NA|326aa|up_8|NZ_CP015206.1_2074224_2075202_+	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|736aa|up_7|NZ_CP015206.1_2075426_2077634_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|63aa|up_6|NZ_CP015206.1_2077849_2078038_+	NA	NA|89aa|up_5|NZ_CP015206.1_2078180_2078447_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|575aa|up_4|NZ_CP015206.1_2078446_2080171_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|258aa|up_3|NZ_CP015206.1_2080243_2081017_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|396aa|up_2|NZ_CP015206.1_2081102_2082290_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|339aa|up_1|NZ_CP015206.1_2082320_2083337_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|335aa|up_0|NZ_CP015206.1_2083382_2084387_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|244aa|down_0|NZ_CP015206.1_2091982_2092714_-	NA	NA|397aa|down_1|NZ_CP015206.1_2092885_2094076_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|490aa|down_2|NZ_CP015206.1_2094251_2095721_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|188aa|down_3|NZ_CP015206.1_2095800_2096364_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|212aa|down_4|NZ_CP015206.1_2096356_2096992_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|806aa|down_5|NZ_CP015206.1_2097397_2099815_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|561aa|down_6|NZ_CP015206.1_2100071_2101754_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|240aa|down_7|NZ_CP015206.1_2101764_2102484_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|277aa|down_8|NZ_CP015206.1_2102590_2103421_-	cd01171, YXKO-related, B	NA|154aa|down_9|NZ_CP015206.1_2103546_2104008_+	pfam00582, Usp, Universal stress protein family
