assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	1	248909-249466	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas6,cas10,csm2gr11,csm3gr7	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Type III-B,Type III-C,Type III-D,Type III-A	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAA,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	36,34,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	7,6,6	7	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA|203aa|down_3|NZ_CP011510.1_253924_254533_-,NA|104aa|down_4|NZ_CP011510.1_254952_255264_-,NA|86aa|down_5|NZ_CP011510.1_255368_255626_-,NA|64aa|down_7|NZ_CP011510.1_257212_257404_-,NA|135aa|down_8|NZ_CP011510.1_257400_257805_-,NA|85aa|down_9|NZ_CP011510.1_257952_258207_+	NA|250aa|up_9|NZ_CP011510.1_240371_241121_-	PRK06190, PRK06190, enoyl-CoA hydratase; Provisional	NA|72aa|up_8|NZ_CP011510.1_241167_241383_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|131aa|up_7|NZ_CP011510.1_241379_241772_+	COG3744, COG3744, PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) [Signal transduction mechanisms]	NA|90aa|up_6|NZ_CP011510.1_241792_242062_+	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_5|NZ_CP011510.1_242058_242604_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	cas6|315aa|up_4|NZ_CP011510.1_242781_243726_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|813aa|up_3|NZ_CP011510.1_243722_246161_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|125aa|up_2|NZ_CP011510.1_246157_246532_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|237aa|up_1|NZ_CP011510.1_246541_247252_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|421aa|up_0|NZ_CP011510.1_247615_248877_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|421aa|down_0|NZ_CP011510.1_249506_250768_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|271aa|down_1|NZ_CP011510.1_251635_252448_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|470aa|down_2|NZ_CP011510.1_252444_253854_-	pfam00665, rve, Integrase core domain	NA|203aa|down_3|NZ_CP011510.1_253924_254533_-	NA	NA|104aa|down_4|NZ_CP011510.1_254952_255264_-	NA	NA|86aa|down_5|NZ_CP011510.1_255368_255626_-	NA	NA|385aa|down_6|NZ_CP011510.1_255859_257014_-	pfam00665, rve, Integrase core domain	NA|64aa|down_7|NZ_CP011510.1_257212_257404_-	NA	NA|135aa|down_8|NZ_CP011510.1_257400_257805_-	NA	NA|85aa|down_9|NZ_CP011510.1_257952_258207_+	NA
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	2	250860-251487	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas10,csm2gr11,csm3gr7,c2c9_V-U4	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Type III-B,Type III-C,Type III-D,Type III-A	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	8,8,8	8	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA|203aa|down_2|NZ_CP011510.1_253924_254533_-,NA|104aa|down_3|NZ_CP011510.1_254952_255264_-,NA|86aa|down_4|NZ_CP011510.1_255368_255626_-,NA|64aa|down_6|NZ_CP011510.1_257212_257404_-,NA|135aa|down_7|NZ_CP011510.1_257400_257805_-,NA|85aa|down_8|NZ_CP011510.1_257952_258207_+	NA|72aa|up_9|NZ_CP011510.1_241167_241383_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|131aa|up_8|NZ_CP011510.1_241379_241772_+	COG3744, COG3744, PIN domain nuclease, a component of toxin-antitoxin system (PIN domain) [Signal transduction mechanisms]	NA|90aa|up_7|NZ_CP011510.1_241792_242062_+	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_6|NZ_CP011510.1_242058_242604_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	cas6|315aa|up_5|NZ_CP011510.1_242781_243726_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|813aa|up_4|NZ_CP011510.1_243722_246161_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|125aa|up_3|NZ_CP011510.1_246157_246532_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|237aa|up_2|NZ_CP011510.1_246541_247252_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|421aa|up_1|NZ_CP011510.1_247615_248877_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|421aa|up_0|NZ_CP011510.1_249506_250768_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|271aa|down_0|NZ_CP011510.1_251635_252448_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|470aa|down_1|NZ_CP011510.1_252444_253854_-	pfam00665, rve, Integrase core domain	NA|203aa|down_2|NZ_CP011510.1_253924_254533_-	NA	NA|104aa|down_3|NZ_CP011510.1_254952_255264_-	NA	NA|86aa|down_4|NZ_CP011510.1_255368_255626_-	NA	NA|385aa|down_5|NZ_CP011510.1_255859_257014_-	pfam00665, rve, Integrase core domain	NA|64aa|down_6|NZ_CP011510.1_257212_257404_-	NA	NA|135aa|down_7|NZ_CP011510.1_257400_257805_-	NA	NA|85aa|down_8|NZ_CP011510.1_257952_258207_+	NA	NA|92aa|down_9|NZ_CP011510.1_258382_258658_-	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	3	1192612-1192753	3	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	TGAGTATTCCGTCGGTGACGGTTCCGCCGATCACGATTCCGGCTGGCAC	49	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|127aa|up_5|NZ_CP011510.1_1184714_1185095_+,NA|136aa|down_2|NZ_CP011510.1_1202385_1202793_+	NA|256aa|up_9|NZ_CP011510.1_1180427_1181195_+	PRK05867, PRK05867, SDR family oxidoreductase	NA|258aa|up_8|NZ_CP011510.1_1181198_1181972_-	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|160aa|up_7|NZ_CP011510.1_1182208_1182688_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|621aa|up_6|NZ_CP011510.1_1182695_1184558_-	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|127aa|up_5|NZ_CP011510.1_1184714_1185095_+	NA	NA|447aa|up_4|NZ_CP011510.1_1185131_1186472_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|372aa|up_3|NZ_CP011510.1_1186462_1187578_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|424aa|up_2|NZ_CP011510.1_1187849_1189121_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|288aa|up_1|NZ_CP011510.1_1189158_1190022_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|155aa|up_0|NZ_CP011510.1_1190119_1190584_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|1816aa|down_0|NZ_CP011510.1_1194333_1199781_+	pfam00823, PPE, PPE family	NA|767aa|down_1|NZ_CP011510.1_1199950_1202251_-	PLN02892, PLN02892, isocitrate lyase	NA|136aa|down_2|NZ_CP011510.1_1202385_1202793_+	NA	NA|251aa|down_3|NZ_CP011510.1_1202770_1203523_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|335aa|down_4|NZ_CP011510.1_1203622_1204627_+	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|202aa|down_5|NZ_CP011510.1_1204726_1205332_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|198aa|down_6|NZ_CP011510.1_1205414_1206008_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|148aa|down_7|NZ_CP011510.1_1206121_1206565_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|741aa|down_8|NZ_CP011510.1_1206602_1208825_+	PRK15061, PRK15061, catalase/peroxidase	NA|155aa|down_9|NZ_CP011510.1_1209000_1209465_+	pfam14081, DUF4262, Domain of unknown function (DUF4262)
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	4	1300399-1301352	3	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	GNCGGCGGNGCCGGCGGN	18	3	7	1300540-1300560|1300540-1300560|1300540-1300560|1300540-1300560|1300639-1300659|1300639-1300659|1300882-1300899	NZ_CP011510.1_998861-998881|NZ_CP011510.1_1856895-1856915|NZ_CP011510.1_1857054-1857074|NZ_CP011510.1_2180225-2180245|NZ_CP011510.1_2250631-2250611|NZ_CP011510.1_3949695-3949675|NZ_CP011510.1_2131564-2131547	NA	15	15	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA|222aa|down_2|NZ_CP011510.1_1304426_1305092_-	NA|248aa|up_9|NZ_CP011510.1_1288828_1289572_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|163aa|up_8|NZ_CP011510.1_1289568_1290057_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|135aa|up_7|NZ_CP011510.1_1290296_1290701_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_6|NZ_CP011510.1_1290738_1291617_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|up_5|NZ_CP011510.1_1291633_1291966_-	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|308aa|up_4|NZ_CP011510.1_1292027_1292951_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|210aa|up_3|NZ_CP011510.1_1292943_1293573_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|809aa|up_2|NZ_CP011510.1_1293769_1296196_-	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|548aa|up_1|NZ_CP011510.1_1296210_1297854_-	PRK05858, PRK05858, acetolactate synthase	NA|640aa|up_0|NZ_CP011510.1_1297924_1299844_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|488aa|down_0|NZ_CP011510.1_1301561_1303025_-	PRK07121, PRK07121, FAD-binding protein	NA|235aa|down_1|NZ_CP011510.1_1303659_1304364_-	pfam13305, WHG, WHG domain	NA|222aa|down_2|NZ_CP011510.1_1304426_1305092_-	NA	NA|301aa|down_3|NZ_CP011510.1_1305196_1306099_-	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|144aa|down_4|NZ_CP011510.1_1306507_1306939_+	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|401aa|down_5|NZ_CP011510.1_1307260_1308463_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|235aa|down_6|NZ_CP011510.1_1308472_1309177_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|119aa|down_7|NZ_CP011510.1_1309330_1309687_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|469aa|down_8|NZ_CP011510.1_1309931_1311338_-	pfam00823, PPE, PPE family	NA|410aa|down_9|NZ_CP011510.1_1311469_1312699_-	pfam00823, PPE, PPE family
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	5	1713168-1714007	4	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	GNCGGCGGNANCGGCGGC	18	1	1	1713186-1713212	NZ_CP011510.1_1709488-1709514	NA	14	14	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|288aa|up_3|NZ_CP011510.1_1705433_1706297_-,NA|137aa|down_5|NZ_CP011510.1_1723194_1723605_+,NA|38aa|down_6|NZ_CP011510.1_1723654_1723768_+	NA|847aa|up_9|NZ_CP011510.1_1697500_1700041_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|269aa|up_8|NZ_CP011510.1_1700037_1700844_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|592aa|up_7|NZ_CP011510.1_1700891_1702667_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|314aa|up_6|NZ_CP011510.1_1702716_1703658_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|up_5|NZ_CP011510.1_1703654_1704440_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|311aa|up_4|NZ_CP011510.1_1704551_1705484_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|288aa|up_3|NZ_CP011510.1_1705433_1706297_-	NA	NA|329aa|up_2|NZ_CP011510.1_1706316_1707303_+	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|422aa|up_1|NZ_CP011510.1_1707330_1708596_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|309aa|up_0|NZ_CP011510.1_1710717_1711644_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|701aa|down_0|NZ_CP011510.1_1716689_1718792_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|374aa|down_1|NZ_CP011510.1_1718808_1719930_+	PRK03343, PRK03343, transaldolase; Validated	NA|515aa|down_2|NZ_CP011510.1_1719926_1721471_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|305aa|down_3|NZ_CP011510.1_1721523_1722438_+	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|248aa|down_4|NZ_CP011510.1_1722434_1723178_+	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|137aa|down_5|NZ_CP011510.1_1723194_1723605_+	NA	NA|38aa|down_6|NZ_CP011510.1_1723654_1723768_+	NA	NA|162aa|down_7|NZ_CP011510.1_1724199_1724685_+	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|767aa|down_8|NZ_CP011510.1_1724800_1727101_-	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|470aa|down_9|NZ_CP011510.1_1727207_1728617_+	pfam00934, PE, PE family
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	6	2413933-2414892	5	CRT	no	csa3	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Type I-A	GGNNCCGCCGGCCCCGCC	18	3	3	2414066-2414086|2414455-2414481|2414857-2414874	NZ_CP011510.1_3804308-3804328|NZ_CP011510.1_315939-315965|NZ_CP011510.1_3711569-3711552	NA	19	19	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|81aa|up_8|NZ_CP011510.1_2403699_2403942_-,NA|184aa|up_2|NZ_CP011510.1_2409405_2409957_+,NA	NA|431aa|up_9|NZ_CP011510.1_2402130_2403423_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|81aa|up_8|NZ_CP011510.1_2403699_2403942_-	NA	NA|287aa|up_7|NZ_CP011510.1_2404217_2405078_+	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|271aa|up_6|NZ_CP011510.1_2405145_2405958_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|257aa|up_5|NZ_CP011510.1_2406044_2406815_-	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|343aa|up_4|NZ_CP011510.1_2407503_2408532_+	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|241aa|up_3|NZ_CP011510.1_2408602_2409325_+	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|184aa|up_2|NZ_CP011510.1_2409405_2409957_+	NA	NA|215aa|up_1|NZ_CP011510.1_2409937_2410582_-	pfam14032, PknH_C, PknH-like extracellular domain	NA|884aa|up_0|NZ_CP011510.1_2411049_2413701_+	pfam00934, PE, PE family	NA|272aa|down_0|NZ_CP011510.1_2417809_2418625_+	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|302aa|down_1|NZ_CP011510.1_2418643_2419549_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|97aa|down_2|NZ_CP011510.1_2419653_2419944_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|141aa|down_3|NZ_CP011510.1_2419905_2420328_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	csa3|131aa|down_4|NZ_CP011510.1_2420385_2420778_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|352aa|down_5|NZ_CP011510.1_2420829_2421885_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|214aa|down_6|NZ_CP011510.1_2421965_2422607_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|339aa|down_7|NZ_CP011510.1_2422768_2423785_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|389aa|down_8|NZ_CP011510.1_2423814_2424981_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|685aa|down_9|NZ_CP011510.1_2425146_2427201_+	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	7	2648776-2648852	4	CRISPRCasFinder	no	c2c9_V-U4	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Type V-U4	ACCCGCGCTCACGCCGCACCTCA	23	0	0	NA	NA	NA	1	1	TypeV-U4	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA	NA|104aa|up_9|NZ_CP011510.1_2640709_2641021_-	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|254aa|up_8|NZ_CP011510.1_2641077_2641839_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|157aa|up_7|NZ_CP011510.1_2641882_2642353_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|169aa|up_6|NZ_CP011510.1_2642466_2642973_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|79aa|up_5|NZ_CP011510.1_2643076_2643313_+	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|138aa|up_4|NZ_CP011510.1_2643309_2643723_+	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|412aa|up_3|NZ_CP011510.1_2643973_2645209_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|86aa|up_2|NZ_CP011510.1_2645391_2645649_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|131aa|up_1|NZ_CP011510.1_2645645_2646038_+	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|517aa|up_0|NZ_CP011510.1_2646089_2647640_-	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|down_0|NZ_CP011510.1_2650372_2651818_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|344aa|down_1|NZ_CP011510.1_2651814_2652846_-	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|down_2|NZ_CP011510.1_2652842_2654057_-	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|296aa|down_3|NZ_CP011510.1_2654062_2654950_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|266aa|down_4|NZ_CP011510.1_2654951_2655749_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|241aa|down_5|NZ_CP011510.1_2655745_2656468_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|796aa|down_6|NZ_CP011510.1_2656605_2658993_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|878aa|down_7|NZ_CP011510.1_2659015_2661649_-	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|229aa|down_8|NZ_CP011510.1_2661802_2662489_+	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|136aa|down_9|NZ_CP011510.1_2662548_2662956_-	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	8	2976513-2976609	5	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|161aa|up_8|NZ_CP011510.1_2962210_2962693_+,NA|101aa|up_1|NZ_CP011510.1_2975471_2975774_-,NA	NA|239aa|up_9|NZ_CP011510.1_2961436_2962153_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP011510.1_2962210_2962693_+	NA	NA|224aa|up_7|NZ_CP011510.1_2962680_2963352_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP011510.1_2963554_2973100_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP011510.1_2973107_2974016_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP011510.1_2974012_2974645_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP011510.1_2974780_2975206_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP011510.1_2975202_2975424_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP011510.1_2975471_2975774_-	NA	NA|76aa|up_0|NZ_CP011510.1_2975770_2975998_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP011510.1_2978094_2979492_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP011510.1_2979501_2980305_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP011510.1_2980293_2981079_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP011510.1_2981185_2982388_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP011510.1_2982374_2983370_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP011510.1_2983366_2984752_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP011510.1_2984748_2986167_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP011510.1_2986213_2987101_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP011510.1_2987111_2987402_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP011510.1_2987431_2987725_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	9	2976690-2976960	6	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	0	0	NA	NA	NA	4	4	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|161aa|up_8|NZ_CP011510.1_2962210_2962693_+,NA|101aa|up_1|NZ_CP011510.1_2975471_2975774_-,NA	NA|239aa|up_9|NZ_CP011510.1_2961436_2962153_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP011510.1_2962210_2962693_+	NA	NA|224aa|up_7|NZ_CP011510.1_2962680_2963352_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP011510.1_2963554_2973100_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP011510.1_2973107_2974016_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP011510.1_2974012_2974645_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP011510.1_2974780_2975206_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP011510.1_2975202_2975424_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP011510.1_2975471_2975774_-	NA	NA|76aa|up_0|NZ_CP011510.1_2975770_2975998_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP011510.1_2978094_2979492_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP011510.1_2979501_2980305_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP011510.1_2980293_2981079_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP011510.1_2981185_2982388_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP011510.1_2982374_2983370_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP011510.1_2983366_2984752_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP011510.1_2984748_2986167_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP011510.1_2986213_2987101_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP011510.1_2987111_2987402_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP011510.1_2987431_2987725_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	10	2977230-2977571	7	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	1	1	2977254-2977274	NZ_CP011510.1_3207097-3207117	NA	5	5	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|161aa|up_8|NZ_CP011510.1_2962210_2962693_+,NA|101aa|up_1|NZ_CP011510.1_2975471_2975774_-,NA	NA|239aa|up_9|NZ_CP011510.1_2961436_2962153_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP011510.1_2962210_2962693_+	NA	NA|224aa|up_7|NZ_CP011510.1_2962680_2963352_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP011510.1_2963554_2973100_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP011510.1_2973107_2974016_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP011510.1_2974012_2974645_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP011510.1_2974780_2975206_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP011510.1_2975202_2975424_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP011510.1_2975471_2975774_-	NA	NA|76aa|up_0|NZ_CP011510.1_2975770_2975998_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP011510.1_2978094_2979492_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP011510.1_2979501_2980305_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP011510.1_2980293_2981079_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP011510.1_2981185_2982388_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP011510.1_2982374_2983370_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP011510.1_2983366_2984752_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP011510.1_2984748_2986167_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP011510.1_2986213_2987101_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP011510.1_2987111_2987402_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP011510.1_2987431_2987725_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	11	3638531-3638619	8	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	GGCCGTCATCCGGCCCGCATCGTCGCCGAGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|126aa|up_6|NZ_CP011510.1_3632917_3633295_-,NA|233aa|down_0|NZ_CP011510.1_3638815_3639514_+,NA|52aa|down_2|NZ_CP011510.1_3641515_3641671_-,NA|119aa|down_3|NZ_CP011510.1_3641770_3642127_-,NA|257aa|down_8|NZ_CP011510.1_3647261_3648032_+	NA|152aa|up_9|NZ_CP011510.1_3630782_3631238_+	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|265aa|up_8|NZ_CP011510.1_3631244_3632039_+	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|225aa|up_7|NZ_CP011510.1_3632144_3632819_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|126aa|up_6|NZ_CP011510.1_3632917_3633295_-	NA	NA|246aa|up_5|NZ_CP011510.1_3633402_3634140_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|228aa|up_4|NZ_CP011510.1_3634139_3634823_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|274aa|up_3|NZ_CP011510.1_3634954_3635776_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|398aa|up_2|NZ_CP011510.1_3635781_3636975_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|328aa|up_1|NZ_CP011510.1_3636967_3637951_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|173aa|up_0|NZ_CP011510.1_3637951_3638470_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|233aa|down_0|NZ_CP011510.1_3638815_3639514_+	NA	NA|652aa|down_1|NZ_CP011510.1_3639549_3641505_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|52aa|down_2|NZ_CP011510.1_3641515_3641671_-	NA	NA|119aa|down_3|NZ_CP011510.1_3641770_3642127_-	NA	NA|542aa|down_4|NZ_CP011510.1_3642212_3643838_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|309aa|down_5|NZ_CP011510.1_3643839_3644766_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|288aa|down_6|NZ_CP011510.1_3644758_3645622_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|549aa|down_7|NZ_CP011510.1_3645618_3647265_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|257aa|down_8|NZ_CP011510.1_3647261_3648032_+	NA	NA|288aa|down_9|NZ_CP011510.1_3648786_3649650_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	12	3695822-3696051	3	PILER-CR	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGCATTGTCGCCAGGCGCGGGGTTTGCGATCGCCACGGGGCTGATGGTGGCGAC	55	2	2	3695877-3695932|3695988-3696043	NZ_CP011510.1_3696052-3696107|NZ_CP011510.1_3696052-3696107	NA	2	2	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|393aa|up_3|NZ_CP011510.1_3692995_3694174_+,NA|185aa|up_1|NZ_CP011510.1_3694674_3695229_+,NA|54aa|up_0|NZ_CP011510.1_3695328_3695490_+,NA	NA|100aa|up_9|NZ_CP011510.1_3687172_3687472_+	pfam00934, PE, PE family	NA|414aa|up_8|NZ_CP011510.1_3687481_3688723_+	pfam00823, PPE, PPE family	NA|99aa|up_7|NZ_CP011510.1_3688779_3689076_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|95aa|up_6|NZ_CP011510.1_3689102_3689387_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|396aa|up_5|NZ_CP011510.1_3689485_3690673_-	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]	NA|323aa|up_4|NZ_CP011510.1_3690669_3691638_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|393aa|up_3|NZ_CP011510.1_3692995_3694174_+	NA	NA|104aa|up_2|NZ_CP011510.1_3694247_3694559_+	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm	NA|185aa|up_1|NZ_CP011510.1_3694674_3695229_+	NA	NA|54aa|up_0|NZ_CP011510.1_3695328_3695490_+	NA	NA|761aa|down_0|NZ_CP011510.1_3696265_3698548_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|203aa|down_1|NZ_CP011510.1_3698563_3699172_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|281aa|down_2|NZ_CP011510.1_3699168_3700011_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|134aa|down_3|NZ_CP011510.1_3700003_3700405_+	cd00534, DHNA_DHNTPE, Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively	NA|189aa|down_4|NZ_CP011510.1_3700401_3700968_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|159aa|down_5|NZ_CP011510.1_3700967_3701444_+	pfam11377, DUF3180, Protein of unknown function (DUF3180)	NA|398aa|down_6|NZ_CP011510.1_3701652_3702846_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|304aa|down_7|NZ_CP011510.1_3703030_3703942_+	COG5495, COG5495, Uncharacterized conserved protein [Function unknown]	NA|310aa|down_8|NZ_CP011510.1_3703938_3704868_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|140aa|down_9|NZ_CP011510.1_3704867_3705287_+	pfam02261, Asp_decarbox, Aspartate decarboxylase
GCF_001750865.1_ASM175086v1	NZ_CP011510	Mycobacterium tuberculosis strain Beijing, complete genome	13	3989141-3989266	4	PILER-CR	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	TTTCAACACCGGCATCGGCAAC	22	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|87aa|up_3|NZ_CP011510.1_3982752_3983013_+,NA|96aa|down_0|NZ_CP011510.1_3996132_3996420_+	NA|397aa|up_9|NZ_CP011510.1_3979214_3980405_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|86aa|up_8|NZ_CP011510.1_3980446_3980704_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|92aa|up_7|NZ_CP011510.1_3980700_3980976_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|282aa|up_6|NZ_CP011510.1_3981099_3981945_+	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|98aa|up_5|NZ_CP011510.1_3981941_3982235_+	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|130aa|up_4|NZ_CP011510.1_3982248_3982638_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|87aa|up_3|NZ_CP011510.1_3982752_3983013_+	NA	NA|137aa|up_2|NZ_CP011510.1_3982847_3983258_+	pfam01565, FAD_binding_4, FAD binding domain	NA|124aa|up_1|NZ_CP011510.1_3983155_3983527_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|265aa|up_0|NZ_CP011510.1_3983608_3984403_+	pfam08031, BBE, Berberine and berberine like	NA|96aa|down_0|NZ_CP011510.1_3996132_3996420_+	NA	NA|273aa|down_1|NZ_CP011510.1_3996636_3997455_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|149aa|down_2|NZ_CP011510.1_3997491_3997938_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|3158aa|down_3|NZ_CP011510.1_3998563_4008037_+	pfam00823, PPE, PPE family	NA|86aa|down_4|NZ_CP011510.1_4008292_4008550_+	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|1916aa|down_5|NZ_CP011510.1_4008979_4014727_+	pfam00934, PE, PE family	NA|3114aa|down_6|NZ_CP011510.1_4014775_4024117_+	pfam00823, PPE, PPE family	NA|244aa|down_7|NZ_CP011510.1_4024125_4024857_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|380aa|down_8|NZ_CP011510.1_4024853_4025993_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|450aa|down_9|NZ_CP011510.1_4026004_4027354_-	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated
