assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	1	193767-193907	1	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	AAGGCGAGGCAACGCTGTACTGGTTTTTGTTAATCCACTATA	42	1	156	193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865|193809-193865	NZ_CP012694.1_45649-45593|NZ_CP012694.1_57460-57516|NZ_CP012694.1_58697-58753|NZ_CP012694.1_86385-86441|NZ_CP012694.1_94206-94262|NZ_CP012694.1_116388-116332|NZ_CP012694.1_117544-117600|NZ_CP012694.1_146373-146317|NZ_CP012694.1_163970-164026|NZ_CP012694.1_164825-164769|NZ_CP012694.1_175416-175472|NZ_CP012694.1_215906-215962|NZ_CP012694.1_270905-270849|NZ_CP012694.1_280627-280683|NZ_CP012694.1_311892-311948|NZ_CP012694.1_313351-313407|NZ_CP012694.1_319428-319484|NZ_CP012694.1_389853-389797|NZ_CP012694.1_408212-408268|NZ_CP012694.1_423769-423825|NZ_CP012694.1_439229-439173|NZ_CP012694.1_448626-448682|NZ_CP012694.1_457428-457372|NZ_CP012694.1_457683-457627|NZ_CP012694.1_471690-471634|NZ_CP012694.1_530321-530265|NZ_CP012694.1_532616-532672|NZ_CP012694.1_573804-573860|NZ_CP012694.1_587558-587614|NZ_CP012694.1_590686-590630|NZ_CP012694.1_631900-631844|NZ_CP012694.1_720109-720165|NZ_CP012694.1_729434-729378|NZ_CP012694.1_729830-729774|NZ_CP012694.1_749300-749244|NZ_CP012694.1_770275-770331|NZ_CP012694.1_777608-777664|NZ_CP012694.1_805599-805655|NZ_CP012694.1_815971-815915|NZ_CP012694.1_861061-861005|NZ_CP012694.1_870371-870427|NZ_CP012694.1_875386-875330|NZ_CP012694.1_882343-882287|NZ_CP012694.1_887021-887077|NZ_CP012694.1_901653-901597|NZ_CP012694.1_944232-944288|NZ_CP012694.1_980063-980119|NZ_CP012694.1_1006520-1006464|NZ_CP012694.1_1111578-1111522|NZ_CP012694.1_1149969-1150025|NZ_CP012694.1_1153372-1153428|NZ_CP012694.1_1193754-1193810|NZ_CP012694.1_1213633-1213689|NZ_CP012694.1_1225700-1225644|NZ_CP012694.1_1234700-1234644|NZ_CP012694.1_1235932-1235988|NZ_CP012694.1_1236839-1236895|NZ_CP012694.1_1247717-1247661|NZ_CP012694.1_1267555-1267499|NZ_CP012694.1_1288379-1288435|NZ_CP012694.1_1300409-1300465|NZ_CP012694.1_1303037-1302981|NZ_CP012694.1_1336646-1336702|NZ_CP012694.1_1367954-1368010|NZ_CP012694.1_1381889-1381945|NZ_CP012694.1_1392121-1392177|NZ_CP012694.1_1407129-1407185|NZ_CP012694.1_1422231-1422287|NZ_CP012694.1_1475107-1475163|NZ_CP012694.1_1493383-1493439|NZ_CP012694.1_1495119-1495175|NZ_CP012694.1_1516566-1516622|NZ_CP012694.1_1518870-1518926|NZ_CP012694.1_1598345-1598401|NZ_CP012694.1_1603381-1603437|NZ_CP012694.1_1604085-1604141|NZ_CP012694.1_1654022-1654078|NZ_CP012694.1_1683927-1683983|NZ_CP012694.1_1691402-1691346|NZ_CP012694.1_1772129-1772073|NZ_CP012694.1_1780471-1780527|NZ_CP012694.1_1807900-1807956|NZ_CP012694.1_1810505-1810449|NZ_CP012694.1_1868317-1868373|NZ_CP012694.1_1872499-1872443|NZ_CP012694.1_1882027-1881971|NZ_CP012694.1_1883379-1883323|NZ_CP012694.1_1909279-1909223|NZ_CP012694.1_1919328-1919384|NZ_CP012694.1_1963176-1963120|NZ_CP012694.1_2005765-2005709|NZ_CP012694.1_2009542-2009598|NZ_CP012694.1_2047711-2047767|NZ_CP012694.1_2092325-2092381|NZ_CP012694.1_2095538-2095482|NZ_CP012694.1_2103770-2103826|NZ_CP012694.1_2147612-2147556|NZ_CP012694.1_2162627-2162571|NZ_CP012694.1_2174431-2174487|NZ_CP012694.1_2175005-2175061|NZ_CP012694.1_55606-55550|NZ_CP012694.1_64747-64803|NZ_CP012694.1_66572-66516|NZ_CP012694.1_103637-103693|NZ_CP012694.1_134632-134576|NZ_CP012694.1_244777-244833|NZ_CP012694.1_283206-283150|NZ_CP012694.1_284566-284510|NZ_CP012694.1_308304-308360|NZ_CP012694.1_325569-325513|NZ_CP012694.1_328401-328345|NZ_CP012694.1_387621-387565|NZ_CP012694.1_397381-397325|NZ_CP012694.1_444109-444053|NZ_CP012694.1_613200-613144|NZ_CP012694.1_645021-645077|NZ_CP012694.1_663041-663097|NZ_CP012694.1_673716-673660|NZ_CP012694.1_742614-742558|NZ_CP012694.1_784199-784143|NZ_CP012694.1_808302-808246|NZ_CP012694.1_819388-819444|NZ_CP012694.1_885834-885890|NZ_CP012694.1_890698-890642|NZ_CP012694.1_950672-950616|NZ_CP012694.1_1120428-1120372|NZ_CP012694.1_1148409-1148353|NZ_CP012694.1_1154388-1154444|NZ_CP012694.1_1155236-1155292|NZ_CP012694.1_1161461-1161405|NZ_CP012694.1_1295549-1295605|NZ_CP012694.1_1307018-1306962|NZ_CP012694.1_1473731-1473787|NZ_CP012694.1_1513127-1513183|NZ_CP012694.1_1651913-1651969|NZ_CP012694.1_1747167-1747111|NZ_CP012694.1_1804660-1804716|NZ_CP012694.1_1808590-1808646|NZ_CP012694.1_1821595-1821651|NZ_CP012694.1_1899446-1899390|NZ_CP012694.1_1899985-1899929|NZ_CP012694.1_1926634-1926690|NZ_CP012694.1_1950576-1950632|NZ_CP012694.1_1971490-1971434|NZ_CP012694.1_1985963-1986019|NZ_CP012694.1_2181325-2181269|NZ_CP012694.1_107992-107936|NZ_CP012694.1_318688-318744|NZ_CP012694.1_698180-698124|NZ_CP012694.1_813753-813809|NZ_CP012694.1_816445-816389|NZ_CP012694.1_1144845-1144789|NZ_CP012694.1_1291908-1291964|NZ_CP012694.1_1718997-1718941|NZ_CP012694.1_1725638-1725582|NZ_CP012694.1_1770630-1770574	NA	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA|48aa|up_8|NZ_CP012694.1_185106_185250_+,NA|99aa|up_3|NZ_CP012694.1_190484_190781_-,NA|202aa|up_1|NZ_CP012694.1_191765_192371_+,NA	NA|78aa|up_9|NZ_CP012694.1_184741_184975_+	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)	NA|48aa|up_8|NZ_CP012694.1_185106_185250_+	NA	NA|288aa|up_7|NZ_CP012694.1_185448_186312_-	TIGR01214, dTDP-4-keto-L-rhamnose_reductase, dTDP-4-dehydrorhamnose reductase	NA|288aa|up_6|NZ_CP012694.1_186509_187373_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|708aa|up_5|NZ_CP012694.1_187606_189730_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|223aa|up_4|NZ_CP012694.1_189802_190471_-	COG2836, COG2836, Uncharacterized conserved protein [Function unknown]	NA|99aa|up_3|NZ_CP012694.1_190484_190781_-	NA	NA|284aa|up_2|NZ_CP012694.1_190917_191769_+	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|202aa|up_1|NZ_CP012694.1_191765_192371_+	NA	NA|311aa|up_0|NZ_CP012694.1_192564_193497_+	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|300aa|down_0|NZ_CP012694.1_194062_194962_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|340aa|down_1|NZ_CP012694.1_195226_196246_-	PRK10861, PRK10861, signal peptidase I	NA|598aa|down_2|NZ_CP012694.1_196388_198182_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|234aa|down_3|NZ_CP012694.1_198326_199028_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|377aa|down_4|NZ_CP012694.1_199195_200326_+	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|326aa|down_5|NZ_CP012694.1_200359_201337_+	PRK08699, PRK08699, DNA polymerase III subunit delta'; Validated	NA|117aa|down_6|NZ_CP012694.1_201340_201691_+	COG3215, PilZ, Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|260aa|down_7|NZ_CP012694.1_201695_202475_+	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|72aa|down_8|NZ_CP012694.1_202500_202716_+	COG3042, Hlx, Putative hemolysin [General function prediction only]	NA|104aa|down_9|NZ_CP012694.1_202816_203128_+	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	2	996893-997002	2	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	TTGCGTAGGGTGGGCTTCAGCCCACC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA|244aa|up_2|NZ_CP012694.1_993013_993745_+,NA|343aa|up_0|NZ_CP012694.1_995836_996865_+,NA|254aa|down_7|NZ_CP012694.1_1006662_1007424_-,NA|84aa|down_8|NZ_CP012694.1_1007523_1007775_+	NA|188aa|up_9|NZ_CP012694.1_984609_985173_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|112aa|up_8|NZ_CP012694.1_985983_986319_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|302aa|up_7|NZ_CP012694.1_986447_987353_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|163aa|up_6|NZ_CP012694.1_987414_987903_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|301aa|up_5|NZ_CP012694.1_988049_988952_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|377aa|up_4|NZ_CP012694.1_988992_990123_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|875aa|up_3|NZ_CP012694.1_990327_992952_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|244aa|up_2|NZ_CP012694.1_993013_993745_+	NA	NA|420aa|up_1|NZ_CP012694.1_994453_995713_+	COG1002, COG1002, Type II restriction enzyme, methylase subunits [Defense mechanisms]	NA|343aa|up_0|NZ_CP012694.1_995836_996865_+	NA	NA|228aa|down_0|NZ_CP012694.1_997666_998350_-	PRK14118, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|768aa|down_1|NZ_CP012694.1_998645_1000949_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|506aa|down_2|NZ_CP012694.1_1000968_1002486_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|156aa|down_3|NZ_CP012694.1_1002537_1003005_+	cd19926, REC_PilR, phosphoacceptor receiver (REC) domain of type 4 fimbriae expression regulatory protein PilR and similar proteins	NA|251aa|down_4|NZ_CP012694.1_1003108_1003861_+	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase	NA|69aa|down_5|NZ_CP012694.1_1004894_1005101_-	pfam10981, DUF2788, Protein of unknown function (DUF2788)	NA|390aa|down_6|NZ_CP012694.1_1005195_1006365_-	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase	NA|254aa|down_7|NZ_CP012694.1_1006662_1007424_-	NA	NA|84aa|down_8|NZ_CP012694.1_1007523_1007775_+	NA	NA|269aa|down_9|NZ_CP012694.1_1007826_1008633_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	3	1066093-1066265	1	PILER-CR	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	AAATCCCGTCATTCCCAC	18	2	27	1066111-1066178|1066111-1066178|1066111-1066178|1066111-1066178|1066111-1066178|1066111-1066178|1066111-1066178|1066111-1066178|1066111-1066178|1066111-1066178|1066111-1066178|1066111-1066178|1066111-1066178|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257|1066197-1066257	NZ_CP012694.1_327640-327573|NZ_CP012694.1_886851-886918|NZ_CP012694.1_1236669-1236736|NZ_CP012694.1_1650520-1650587|NZ_CP012694.1_1904454-1904387|NZ_CP012694.1_1908772-1908705|NZ_CP012694.1_1908938-1908871|NZ_CP012694.1_1288748-1288815|NZ_CP012694.1_1899616-1899549|NZ_CP012694.1_1904288-1904221|NZ_CP012694.1_319258-319325|NZ_CP012694.1_1288949-1289016|NZ_CP012694.1_2174835-2174902|NZ_CP012694.1_319133-319193|NZ_CP012694.1_328013-327953|NZ_CP012694.1_886601-886661|NZ_CP012694.1_1236543-1236603|NZ_CP012694.1_1718204-1718144|NZ_CP012694.1_1952209-1952149|NZ_CP012694.1_2023823-2023883|NZ_CP012694.1_2174710-2174770|NZ_CP012694.1_378668-378728|NZ_CP012694.1_1288824-1288884|NZ_CP012694.1_1289025-1289085|NZ_CP012694.1_1718680-1718620|NZ_CP012694.1_1805210-1805150|NZ_CP012694.1_1805954-1805894	NA	2	2	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA|105aa|up_9|NZ_CP012694.1_1055006_1055321_-,NA|72aa|up_8|NZ_CP012694.1_1055317_1055533_-,NA|100aa|up_7|NZ_CP012694.1_1055848_1056148_-,NA|81aa|up_6|NZ_CP012694.1_1056137_1056380_-,NA|70aa|down_0|NZ_CP012694.1_1068280_1068490_-	NA|105aa|up_9|NZ_CP012694.1_1055006_1055321_-	NA	NA|72aa|up_8|NZ_CP012694.1_1055317_1055533_-	NA	NA|100aa|up_7|NZ_CP012694.1_1055848_1056148_-	NA	NA|81aa|up_6|NZ_CP012694.1_1056137_1056380_-	NA	NA|305aa|up_5|NZ_CP012694.1_1056455_1057370_-	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only]	NA|88aa|up_4|NZ_CP012694.1_1059534_1059798_-	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|235aa|up_3|NZ_CP012694.1_1060013_1060718_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|752aa|up_2|NZ_CP012694.1_1060981_1063237_-	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|391aa|up_1|NZ_CP012694.1_1063618_1064791_+	TIGR02376, Copper-containing_nitrite_reductase, nitrite reductase, copper-containing	NA|252aa|up_0|NZ_CP012694.1_1064970_1065726_+	COG1262, COG1262, Uncharacterized conserved protein [Function unknown]	NA|70aa|down_0|NZ_CP012694.1_1068280_1068490_-	NA	NA|186aa|down_1|NZ_CP012694.1_1068507_1069065_-	PRK10828, PRK10828, putative oxidoreductase; Provisional	NA|545aa|down_2|NZ_CP012694.1_1069140_1070775_-	PRK11598, PRK11598, putative metal dependent hydrolase; Provisional	NA|369aa|down_3|NZ_CP012694.1_1071178_1072285_-	cd00611, PSAT_like, Phosphoserine aminotransferase (PSAT) family	NA|150aa|down_4|NZ_CP012694.1_1072631_1073081_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|down_5|NZ_CP012694.1_1073108_1074611_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|963aa|down_6|NZ_CP012694.1_1074622_1077511_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|465aa|down_7|NZ_CP012694.1_1077721_1079116_-	pfam11981, DUF3482, Domain of unknown function (DUF3482)	NA|450aa|down_8|NZ_CP012694.1_1079177_1080527_-	pfam11067, DUF2868, Protein of unknown function (DUF2868)	NA|209aa|down_9|NZ_CP012694.1_1080669_1081296_+	TIGR01065, Hypothetical_UPF0073_protein_yqfA
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	4	1220738-1220926	2	PILER-CR	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	CCCACAAACCTACATTCCATCATTCCCACGAAAATGGGAATCCAG	45	2	18	1220783-1220826|1220783-1220826|1220783-1220826|1220783-1220826|1220783-1220826|1220783-1220826|1220783-1220826|1220872-1220924|1220872-1220924|1220872-1220924|1220872-1220924|1220872-1220924|1220872-1220924|1220872-1220924|1220872-1220924|1220872-1220924|1220872-1220924|1220872-1220924	NZ_CP012694.1_1895370-1895327|NZ_CP012694.1_1952114-1952071|NZ_CP012694.1_902094-902051|NZ_CP012694.1_1871598-1871641|NZ_CP012694.1_1215056-1215099|NZ_CP012694.1_1806174-1806131|NZ_CP012694.1_1812126-1812083|NZ_CP012694.1_325846-325898|NZ_CP012694.1_326285-326337|NZ_CP012694.1_1239205-1239153|NZ_CP012694.1_1289022-1289074|NZ_CP012694.1_378665-378717|NZ_CP012694.1_890359-890307|NZ_CP012694.1_1214561-1214613|NZ_CP012694.1_1220984-1221036|NZ_CP012694.1_1689518-1689570|NZ_CP012694.1_1805957-1805905|NZ_CP012694.1_1806112-1806060	NA	2	2	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA,NA|101aa|down_0|NZ_CP012694.1_1221298_1221601_+,NA|141aa|down_6|NZ_CP012694.1_1227012_1227435_-	NA|308aa|up_9|NZ_CP012694.1_1204260_1205184_-	PRK02190, PRK02190, agmatinase; Provisional	NA|631aa|up_8|NZ_CP012694.1_1205282_1207175_-	COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]	NA|95aa|up_7|NZ_CP012694.1_1207341_1207626_-	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|603aa|up_6|NZ_CP012694.1_1207776_1209585_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|234aa|up_5|NZ_CP012694.1_1209642_1210344_-	COG2928, COG2928, Uncharacterized conserved protein [Function unknown]	NA|383aa|up_4|NZ_CP012694.1_1210486_1211635_-	COG2829, PldA, Outer membrane phospholipase A [Cell envelope biogenesis, outer membrane]	NA|88aa|up_3|NZ_CP012694.1_1211794_1212058_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|381aa|up_2|NZ_CP012694.1_1212360_1213503_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|916aa|up_1|NZ_CP012694.1_1215359_1218107_-	TIGR01776, Lactoferrin-binding_protein_A, TonB-dependent lactoferrin and transferrin receptors	NA|715aa|up_0|NZ_CP012694.1_1218193_1220338_-	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|101aa|down_0|NZ_CP012694.1_1221298_1221601_+	NA	NA|271aa|down_1|NZ_CP012694.1_1221900_1222713_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|154aa|down_2|NZ_CP012694.1_1222914_1223376_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|417aa|down_3|NZ_CP012694.1_1223372_1224623_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|291aa|down_4|NZ_CP012694.1_1224648_1225521_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|381aa|down_5|NZ_CP012694.1_1225821_1226964_-	COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|141aa|down_6|NZ_CP012694.1_1227012_1227435_-	NA	NA|270aa|down_7|NZ_CP012694.1_1227427_1228237_-	PRK08999, PRK08999, Nudix family hydrolase	NA|126aa|down_8|NZ_CP012694.1_1228313_1228691_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|256aa|down_9|NZ_CP012694.1_1228891_1229659_-	pfam01925, TauE, Sulfite exporter TauE/SafE
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	5	1510245-1510343	3	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	GGATTCCCGCCTGCGCGGGAATGACG	26	1	1	1510271-1510317	NZ_CP012694.1_1012130-1012084	I-E	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA|49aa|up_7|NZ_CP012694.1_1501806_1501953_-,NA|137aa|up_4|NZ_CP012694.1_1503277_1503688_-,NA|98aa|up_1|NZ_CP012694.1_1506233_1506527_-,NA	NA|242aa|up_9|NZ_CP012694.1_1500511_1501237_-	COG2360, Aat, Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]	NA|145aa|up_8|NZ_CP012694.1_1501306_1501741_-	PRK09462, fur, ferric uptake regulator; Provisional	NA|49aa|up_7|NZ_CP012694.1_1501806_1501953_-	NA	NA|126aa|up_6|NZ_CP012694.1_1501967_1502345_+	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]	NA|270aa|up_5|NZ_CP012694.1_1502354_1503164_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|137aa|up_4|NZ_CP012694.1_1503277_1503688_-	NA	NA|385aa|up_3|NZ_CP012694.1_1503943_1505098_-	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]	NA|331aa|up_2|NZ_CP012694.1_1505163_1506156_-	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA|98aa|up_1|NZ_CP012694.1_1506233_1506527_-	NA	NA|920aa|up_0|NZ_CP012694.1_1506649_1509409_+	PRK10811, rne, ribonuclease E; Reviewed	NA|330aa|down_0|NZ_CP012694.1_1510358_1511348_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|476aa|down_1|NZ_CP012694.1_1511507_1512935_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|632aa|down_2|NZ_CP012694.1_1513259_1515155_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|195aa|down_3|NZ_CP012694.1_1515223_1515808_+	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|258aa|down_4|NZ_CP012694.1_1516755_1517529_-	pfam13614, AAA_31, AAA domain	NA|208aa|down_5|NZ_CP012694.1_1517627_1518251_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|376aa|down_6|NZ_CP012694.1_1519189_1520317_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|186aa|down_7|NZ_CP012694.1_1520497_1521055_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|249aa|down_8|NZ_CP012694.1_1521110_1521857_+	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase	NA|266aa|down_9|NZ_CP012694.1_1521859_1522657_+	pfam01148, CTP_transf_1, Cytidylyltransferase family
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	6	1657773-1657878	4	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	CGAAGGCAAATGCGGCGAGGGCAAATGCGGT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA|136aa|up_8|NZ_CP012694.1_1643106_1643514_-,NA|37aa|down_4|NZ_CP012694.1_1660509_1660620_+,NA|141aa|down_5|NZ_CP012694.1_1660648_1661071_+,NA|47aa|down_6|NZ_CP012694.1_1661341_1661482_-,NA|49aa|down_7|NZ_CP012694.1_1661423_1661570_-,NA|87aa|down_9|NZ_CP012694.1_1662600_1662861_-	NA|264aa|up_9|NZ_CP012694.1_1642266_1643058_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|136aa|up_8|NZ_CP012694.1_1643106_1643514_-	NA	NA|229aa|up_7|NZ_CP012694.1_1643513_1644200_-	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins	NA|348aa|up_6|NZ_CP012694.1_1644319_1645363_+	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|409aa|up_5|NZ_CP012694.1_1645525_1646752_+	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]	NA|717aa|up_4|NZ_CP012694.1_1646869_1649020_+	TIGR01666, Uncharacterized_protein_HI_1680, TIGR01666 family membrane protein	NA|336aa|up_3|NZ_CP012694.1_1650775_1651783_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|368aa|up_2|NZ_CP012694.1_1654629_1655733_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|298aa|up_1|NZ_CP012694.1_1655835_1656729_-	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|150aa|up_0|NZ_CP012694.1_1657070_1657520_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|281aa|down_0|NZ_CP012694.1_1658017_1658860_+	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown]	NA|249aa|down_1|NZ_CP012694.1_1658849_1659596_+	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|196aa|down_2|NZ_CP012694.1_1659617_1660205_+	PRK12532, PRK12532, RNA polymerase sigma factor; Provisional	NA|60aa|down_3|NZ_CP012694.1_1660210_1660390_+	pfam13490, zf-HC2, Putative zinc-finger	NA|37aa|down_4|NZ_CP012694.1_1660509_1660620_+	NA	NA|141aa|down_5|NZ_CP012694.1_1660648_1661071_+	NA	NA|47aa|down_6|NZ_CP012694.1_1661341_1661482_-	NA	NA|49aa|down_7|NZ_CP012694.1_1661423_1661570_-	NA	NA|322aa|down_8|NZ_CP012694.1_1661546_1662512_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|87aa|down_9|NZ_CP012694.1_1662600_1662861_-	NA
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	7	1713339-1713432	5	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	GCAATATTCAAAGTTTATAAAAGACC	26	1	1	1713365-1713406	NZ_CP012694.1_1650091-1650050	NA	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA,NA|72aa|down_6|NZ_CP012694.1_1728693_1728909_-	NA|422aa|up_9|NZ_CP012694.1_1703521_1704787_+	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|110aa|up_8|NZ_CP012694.1_1704858_1705188_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|457aa|up_7|NZ_CP012694.1_1705264_1706635_-	TIGR01173, Bifunctional_glmU_protein_	NA|91aa|up_6|NZ_CP012694.1_1706689_1706962_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|244aa|up_5|NZ_CP012694.1_1706937_1707669_-	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase	NA|334aa|up_4|NZ_CP012694.1_1707727_1708729_+	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily	NA|283aa|up_3|NZ_CP012694.1_1708822_1709671_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|162aa|up_2|NZ_CP012694.1_1709696_1710182_+	pfam02464, CinA, Competence-damaged protein	NA|523aa|up_1|NZ_CP012694.1_1710283_1711852_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|422aa|up_0|NZ_CP012694.1_1711996_1713262_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|95aa|down_0|NZ_CP012694.1_1713850_1714135_+	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|1008aa|down_1|NZ_CP012694.1_1714822_1717846_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|1390aa|down_2|NZ_CP012694.1_1719148_1723318_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|616aa|down_3|NZ_CP012694.1_1723372_1725220_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|410aa|down_4|NZ_CP012694.1_1725784_1727014_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|498aa|down_5|NZ_CP012694.1_1727125_1728619_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|72aa|down_6|NZ_CP012694.1_1728693_1728909_-	NA	NA|72aa|down_7|NZ_CP012694.1_1728901_1729117_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|448aa|down_8|NZ_CP012694.1_1729323_1730667_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|267aa|down_9|NZ_CP012694.1_1730791_1731592_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	8	1718265-1718440	6	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	CTAGATTCCCGCTTTCGCGGGAATGACGG	29	2	23	1718294-1718338|1718294-1718338|1718294-1718338|1718294-1718338|1718294-1718338|1718294-1718338|1718294-1718338|1718294-1718338|1718294-1718338|1718294-1718338|1718294-1718338|1718294-1718338|1718294-1718338|1718368-1718410|1718368-1718410|1718368-1718410|1718368-1718410|1718368-1718410|1718368-1718410|1718368-1718410|1718368-1718410|1718368-1718410|1718368-1718410	NZ_CP012694.1_116756-116800|NZ_CP012694.1_116995-117039|NZ_CP012694.1_935727-935683|NZ_CP012694.1_935999-935955|NZ_CP012694.1_944065-944021|NZ_CP012694.1_1214474-1214430|NZ_CP012694.1_1221198-1221154|NZ_CP012694.1_1649986-1649942|NZ_CP012694.1_1689464-1689508|NZ_CP012694.1_1714244-1714288|NZ_CP012694.1_2023733-2023689|NZ_CP012694.1_1805612-1805656|NZ_CP012694.1_1806204-1806248|NZ_CP012694.1_942386-942344|NZ_CP012694.1_942807-942765|NZ_CP012694.1_943030-942988|NZ_CP012694.1_943126-943084|NZ_CP012694.1_943377-943335|NZ_CP012694.1_943991-943949|NZ_CP012694.1_1214400-1214358|NZ_CP012694.1_1220586-1220544|NZ_CP012694.1_1221124-1221082|NZ_CP012694.1_1221620-1221578	I-E	2	2	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA,NA|72aa|down_4|NZ_CP012694.1_1728693_1728909_-,NA|125aa|down_9|NZ_CP012694.1_1733574_1733949_-	NA|457aa|up_9|NZ_CP012694.1_1705264_1706635_-	TIGR01173, Bifunctional_glmU_protein_	NA|91aa|up_8|NZ_CP012694.1_1706689_1706962_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|244aa|up_7|NZ_CP012694.1_1706937_1707669_-	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase	NA|334aa|up_6|NZ_CP012694.1_1707727_1708729_+	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily	NA|283aa|up_5|NZ_CP012694.1_1708822_1709671_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|162aa|up_4|NZ_CP012694.1_1709696_1710182_+	pfam02464, CinA, Competence-damaged protein	NA|523aa|up_3|NZ_CP012694.1_1710283_1711852_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|422aa|up_2|NZ_CP012694.1_1711996_1713262_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|95aa|up_1|NZ_CP012694.1_1713850_1714135_+	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|1008aa|up_0|NZ_CP012694.1_1714822_1717846_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|1390aa|down_0|NZ_CP012694.1_1719148_1723318_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|616aa|down_1|NZ_CP012694.1_1723372_1725220_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|410aa|down_2|NZ_CP012694.1_1725784_1727014_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|498aa|down_3|NZ_CP012694.1_1727125_1728619_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|72aa|down_4|NZ_CP012694.1_1728693_1728909_-	NA	NA|72aa|down_5|NZ_CP012694.1_1728901_1729117_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|448aa|down_6|NZ_CP012694.1_1729323_1730667_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|267aa|down_7|NZ_CP012694.1_1730791_1731592_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|329aa|down_8|NZ_CP012694.1_1731631_1732618_+	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|125aa|down_9|NZ_CP012694.1_1733574_1733949_-	NA
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	9	1718741-1718824	7	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	CTAGATTCCCGCTTTCGCGGGAATGACGG	29	1	5	1718770-1718795|1718770-1718795|1718770-1718795|1718770-1718795|1718770-1718795	NZ_CP012694.1_134212-134237|NZ_CP012694.1_135053-135078|NZ_CP012694.1_305632-305607|NZ_CP012694.1_135547-135572|NZ_CP012694.1_816277-816302	I-E	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA,NA|72aa|down_4|NZ_CP012694.1_1728693_1728909_-,NA|125aa|down_9|NZ_CP012694.1_1733574_1733949_-	NA|457aa|up_9|NZ_CP012694.1_1705264_1706635_-	TIGR01173, Bifunctional_glmU_protein_	NA|91aa|up_8|NZ_CP012694.1_1706689_1706962_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|244aa|up_7|NZ_CP012694.1_1706937_1707669_-	TIGR01993, Suppressor_of_disruption_of_TFIIS, pyrimidine 5'-nucleotidase	NA|334aa|up_6|NZ_CP012694.1_1707727_1708729_+	TIGR01254, Thiamine-binding_periplasmic_protein, ABC transporter periplasmic binding protein, thiB subfamily	NA|283aa|up_5|NZ_CP012694.1_1708822_1709671_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|162aa|up_4|NZ_CP012694.1_1709696_1710182_+	pfam02464, CinA, Competence-damaged protein	NA|523aa|up_3|NZ_CP012694.1_1710283_1711852_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|422aa|up_2|NZ_CP012694.1_1711996_1713262_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|95aa|up_1|NZ_CP012694.1_1713850_1714135_+	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|1008aa|up_0|NZ_CP012694.1_1714822_1717846_+	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]	NA|1390aa|down_0|NZ_CP012694.1_1719148_1723318_-	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown]	NA|616aa|down_1|NZ_CP012694.1_1723372_1725220_-	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|410aa|down_2|NZ_CP012694.1_1725784_1727014_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|498aa|down_3|NZ_CP012694.1_1727125_1728619_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|72aa|down_4|NZ_CP012694.1_1728693_1728909_-	NA	NA|72aa|down_5|NZ_CP012694.1_1728901_1729117_-	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|448aa|down_6|NZ_CP012694.1_1729323_1730667_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|267aa|down_7|NZ_CP012694.1_1730791_1731592_+	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|329aa|down_8|NZ_CP012694.1_1731631_1732618_+	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|125aa|down_9|NZ_CP012694.1_1733574_1733949_-	NA
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	10	1812130-1812234	8	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	GATTCCCACTTTCGTGGGAATGACGG	26	0	0	NA	NA	I-E	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA,NA|62aa|down_0|NZ_CP012694.1_1812381_1812567_-	NA|146aa|up_9|NZ_CP012694.1_1797217_1797655_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|90aa|up_8|NZ_CP012694.1_1797723_1797993_+	COG1925, FruB, Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]	NA|592aa|up_7|NZ_CP012694.1_1797992_1799768_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|313aa|up_6|NZ_CP012694.1_1800210_1801149_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|292aa|up_5|NZ_CP012694.1_1801157_1802033_-	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|634aa|up_4|NZ_CP012694.1_1802630_1804532_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|330aa|up_3|NZ_CP012694.1_1806483_1807473_-	pfam00267, Porin_1, Gram-negative porin	NA|108aa|up_2|NZ_CP012694.1_1808716_1809040_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|266aa|up_1|NZ_CP012694.1_1809390_1810188_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|322aa|up_0|NZ_CP012694.1_1810805_1811771_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|62aa|down_0|NZ_CP012694.1_1812381_1812567_-	NA	NA|231aa|down_1|NZ_CP012694.1_1812677_1813370_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|248aa|down_2|NZ_CP012694.1_1813366_1814110_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|188aa|down_3|NZ_CP012694.1_1814138_1814702_-	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA|190aa|down_4|NZ_CP012694.1_1814698_1815268_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|551aa|down_5|NZ_CP012694.1_1815437_1817090_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|414aa|down_6|NZ_CP012694.1_1818359_1819601_-	PRK10483, PRK10483, tryptophan permease; Provisional	NA|243aa|down_7|NZ_CP012694.1_1819752_1820481_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|306aa|down_8|NZ_CP012694.1_1820517_1821435_+	TIGR00938, homoserine_kinase_homolog, homoserine kinase, Neisseria type	NA|173aa|down_9|NZ_CP012694.1_1821773_1822292_-	TIGR01313, Thermosensitive_gluconokinase, carbohydrate kinase, thermoresistant glucokinase family
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	11	1904605-1904688	9	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	CTAGATTCCCGCTTTCGCGGGAATGACGG	29	1	5	1904634-1904659|1904634-1904659|1904634-1904659|1904634-1904659|1904634-1904659	NZ_CP012694.1_134212-134237|NZ_CP012694.1_135053-135078|NZ_CP012694.1_305632-305607|NZ_CP012694.1_135547-135572|NZ_CP012694.1_816277-816302	I-E	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA,NA|67aa|down_2|NZ_CP012694.1_1910927_1911128_-,NA|130aa|down_3|NZ_CP012694.1_1911136_1911526_-	NA|57aa|up_9|NZ_CP012694.1_1888880_1889051_+	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site	NA|415aa|up_8|NZ_CP012694.1_1889061_1890306_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|31aa|up_7|NZ_CP012694.1_1890341_1890434_-	pfam16951, MaAIMP_sms, Putative methionine and alanine importer, small subunit	NA|529aa|up_6|NZ_CP012694.1_1890430_1892017_-	cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain	NA|218aa|up_5|NZ_CP012694.1_1892179_1892833_-	COG3676, COG3676, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|97aa|up_4|NZ_CP012694.1_1893059_1893350_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|545aa|up_3|NZ_CP012694.1_1893442_1895077_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|811aa|up_2|NZ_CP012694.1_1895759_1898192_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|510aa|up_1|NZ_CP012694.1_1900191_1901721_+	pfam04575, DUF560, Protein of unknown function (DUF560)	NA|627aa|up_0|NZ_CP012694.1_1901767_1903648_-	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|1069aa|down_0|NZ_CP012694.1_1905045_1908252_-	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	NA|481aa|down_1|NZ_CP012694.1_1909450_1910893_-	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|67aa|down_2|NZ_CP012694.1_1910927_1911128_-	NA	NA|130aa|down_3|NZ_CP012694.1_1911136_1911526_-	NA	NA|306aa|down_4|NZ_CP012694.1_1911733_1912651_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|267aa|down_5|NZ_CP012694.1_1912823_1913624_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|259aa|down_6|NZ_CP012694.1_1913671_1914448_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|165aa|down_7|NZ_CP012694.1_1914498_1914993_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|197aa|down_8|NZ_CP012694.1_1915029_1915620_+	COG2854, Ttg2D, ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|93aa|down_9|NZ_CP012694.1_1915676_1915955_+	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	12	1947244-1947353	10	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	TTTCTAGATTCCCGCTTTTGCGGGAATGATGGCGG	35	1	1	1947279-1947318	NZ_CP012694.1_1948093-1948132	I-E	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA,NA|68aa|down_9|NZ_CP012694.1_1960322_1960526_-	NA|157aa|up_9|NZ_CP012694.1_1934766_1935237_+	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|516aa|up_8|NZ_CP012694.1_1935785_1937333_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|292aa|up_7|NZ_CP012694.1_1937357_1938233_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|466aa|up_6|NZ_CP012694.1_1938270_1939668_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|141aa|up_5|NZ_CP012694.1_1939678_1940101_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|299aa|up_4|NZ_CP012694.1_1940273_1941170_+	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|688aa|up_3|NZ_CP012694.1_1941286_1943350_+	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|346aa|up_2|NZ_CP012694.1_1943413_1944451_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|276aa|up_1|NZ_CP012694.1_1944454_1945282_+	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|269aa|up_0|NZ_CP012694.1_1945488_1946295_+	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|242aa|down_0|NZ_CP012694.1_1948243_1948969_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|265aa|down_1|NZ_CP012694.1_1949177_1949972_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|164aa|down_2|NZ_CP012694.1_1952431_1952923_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|249aa|down_3|NZ_CP012694.1_1953486_1954233_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|522aa|down_4|NZ_CP012694.1_1954294_1955860_-	PRK00074, guaA, GMP synthase; Reviewed	NA|622aa|down_5|NZ_CP012694.1_1955959_1957825_-	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA	NA|309aa|down_6|NZ_CP012694.1_1957963_1958890_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|124aa|down_7|NZ_CP012694.1_1958915_1959287_-	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|321aa|down_8|NZ_CP012694.1_1959333_1960296_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|68aa|down_9|NZ_CP012694.1_1960322_1960526_-	NA
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	13	2048542-2049765	3,11,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas9	DEDDh,DinG,cas2,cas1,cas9,cas3	Type II-C, or Type II-C?, Type II-B,Type II-B,Type II-A	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT,GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT,GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	36,36,36	1	1	2049502-2049531	NZ_CP012694.1_2122037-2122066	NA:NA:NA	18,18,18	18	TypeII-C,orTypeII-C?,TypeII-B,TypeII-B,TypeII-A	DEDDh,DinG,cas2,cas1,cas9,cas3	NA,NA|52aa|down_4|NZ_CP012694.1_2058413_2058569_+,NA|70aa|down_6|NZ_CP012694.1_2058838_2059048_+	NA|144aa|up_9|NZ_CP012694.1_2032617_2033049_-	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|559aa|up_8|NZ_CP012694.1_2033223_2034900_+	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|364aa|up_7|NZ_CP012694.1_2035014_2036106_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|623aa|up_6|NZ_CP012694.1_2036479_2038348_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|432aa|up_5|NZ_CP012694.1_2038409_2039705_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|307aa|up_4|NZ_CP012694.1_2040003_2040924_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|930aa|up_3|NZ_CP012694.1_2041065_2043855_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|176aa|up_2|NZ_CP012694.1_2044692_2045220_+	PRK00376, lspA, lipoprotein signal peptidase	NA|323aa|up_1|NZ_CP012694.1_2045248_2046217_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|186aa|up_0|NZ_CP012694.1_2046292_2046850_-	cd07533, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans  HAD-superfamily hydrolase, subfamily IA, variant 1	cas2|109aa|down_0|NZ_CP012694.1_2049828_2050155_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|305aa|down_1|NZ_CP012694.1_2050147_2051062_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1083aa|down_2|NZ_CP012694.1_2051128_2054377_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|1145aa|down_3|NZ_CP012694.1_2054654_2058089_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|52aa|down_4|NZ_CP012694.1_2058413_2058569_+	NA	NA|78aa|down_5|NZ_CP012694.1_2058627_2058861_+	COG2501, COG2501, S4-like RNA binding protein [Replication, recombination, and repair]	NA|70aa|down_6|NZ_CP012694.1_2058838_2059048_+	NA	NA|279aa|down_7|NZ_CP012694.1_2059340_2060177_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|431aa|down_8|NZ_CP012694.1_2060228_2061521_-	COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]	NA|637aa|down_9|NZ_CP012694.1_2061578_2063489_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
GCF_001750825.1_ASM175082v1	NZ_CP012694	Neisseria meningitidis strain 331401, complete genome	14	2072451-2072675	12	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas9,cas3	Orphan	CCGTCATTCCCGCGCAGGCGGGAATC	26	1	8	2072600-2072649|2072600-2072649|2072600-2072649|2072600-2072649|2072600-2072649|2072600-2072649|2072600-2072649|2072600-2072649	NZ_CP012694.1_318957-318908|NZ_CP012694.1_816075-816124|NZ_CP012694.1_1236201-1236152|NZ_CP012694.1_1237416-1237367|NZ_CP012694.1_1288648-1288599|NZ_CP012694.1_1871450-1871401|NZ_CP012694.1_1899716-1899765|NZ_CP012694.1_2174700-2174651	I-E	3	3	Orphan	DEDDh,DinG,cas2,cas1,cas9,cas3	NA,NA	NA|431aa|up_9|NZ_CP012694.1_2060228_2061521_-	COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]	NA|637aa|up_8|NZ_CP012694.1_2061578_2063489_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|392aa|up_7|NZ_CP012694.1_2063536_2064712_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|414aa|up_6|NZ_CP012694.1_2064789_2066031_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|391aa|up_5|NZ_CP012694.1_2066023_2067196_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|356aa|up_4|NZ_CP012694.1_2067210_2068278_-	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences	NA|474aa|up_3|NZ_CP012694.1_2068274_2069696_-	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|370aa|up_2|NZ_CP012694.1_2069890_2071000_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|155aa|up_1|NZ_CP012694.1_2071031_2071496_-	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]	NA|281aa|up_0|NZ_CP012694.1_2071524_2072367_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|360aa|down_0|NZ_CP012694.1_2073010_2074090_-	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|171aa|down_1|NZ_CP012694.1_2074169_2074682_-	PRK00131, aroK, shikimate kinase; Reviewed	NA|746aa|down_2|NZ_CP012694.1_2075859_2078097_-	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion]	NA|182aa|down_3|NZ_CP012694.1_2078115_2078661_-	COG3168, PilP, Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]	NA|216aa|down_4|NZ_CP012694.1_2078678_2079326_-	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]	NA|200aa|down_5|NZ_CP012694.1_2079326_2079926_-	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|372aa|down_6|NZ_CP012694.1_2079928_2081044_-	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]	NA|799aa|down_7|NZ_CP012694.1_2081195_2083592_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|210aa|down_8|NZ_CP012694.1_2083712_2084342_-	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|208aa|down_9|NZ_CP012694.1_2084547_2085171_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]
