assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001746595.1_ASM174659v1	NZ_CP013670	Xanthomonas oryzae pv. oryzae strain PXO71, complete genome	1	862174-866597	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3,WYL	Type I-U, Type I-U?,Type I-C	GTTTCAATCCACGCGCCCGTGAGGACGCGAC,GTTTCAATCCACGCGCCCGTGAGGACGCGAC,GTTTCAATCCACGCGCCCGTGAGGACGCGAC	31,31,31	0	0	NA	NA	I-C:I-C:I-C	67,67,52	67	TypeI-U,TypeI-U?,TypeI-C	cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3,WYL	NA,NA	NA|374aa|up_9|NZ_CP013670.1_848090_849212_+	pfam05137, PilN, Fimbrial assembly protein (PilN)	NA|218aa|up_8|NZ_CP013670.1_849195_849849_+	pfam10741, T2SSM_b, Type II secretion system (T2SS), protein M subtype b	NA|270aa|up_7|NZ_CP013670.1_849838_850648_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|771aa|up_6|NZ_CP013670.1_850644_852957_+	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|280aa|up_5|NZ_CP013670.1_852953_853793_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|243aa|up_4|NZ_CP013670.1_854209_854938_-	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR	NA|192aa|up_3|NZ_CP013670.1_855043_855619_-	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|721aa|up_2|NZ_CP013670.1_855994_858157_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|386aa|up_1|NZ_CP013670.1_858192_859350_-	cd05153, HomoserineK_II, Type II Homoserine Kinase	NA|280aa|up_0|NZ_CP013670.1_859960_860800_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	cas2|97aa|down_0|NZ_CP013670.1_866784_867075_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|345aa|down_1|NZ_CP013670.1_867089_868124_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|211aa|down_2|NZ_CP013670.1_868126_868759_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|289aa|down_3|NZ_CP013670.1_868778_869645_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|615aa|down_4|NZ_CP013670.1_869641_871486_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|225aa|down_5|NZ_CP013670.1_871482_872157_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|761aa|down_6|NZ_CP013670.1_872284_874567_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|322aa|down_7|NZ_CP013670.1_874678_875644_+	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	NA|192aa|down_8|NZ_CP013670.1_876034_876610_-	PRK00884, PRK00884, Maf-like protein; Reviewed	NA|170aa|down_9|NZ_CP013670.1_876722_877232_+	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]
GCF_001746595.1_ASM174659v1	NZ_CP013670	Xanthomonas oryzae pv. oryzae strain PXO71, complete genome	2	3190182-3190333	2	CRISPRCasFinder	no		cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3,WYL	Orphan	TGGCGGCAAGCAGCGCTGGAGACGATGCAGCGGCTGTTGCCGGTGCTGTGC	51	1	22	3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282|3190233-3190282	NZ_CP013670.1_2173676-2173627|NZ_CP013670.1_3197951-3198000|NZ_CP013670.1_2328759-2328710|NZ_CP013670.1_3198662-3198711|NZ_CP013670.1_1240210-1240161|NZ_CP013670.1_2178793-2178744|NZ_CP013670.1_2178895-2178846|NZ_CP013670.1_2178997-2178948|NZ_CP013670.1_2327025-2326976|NZ_CP013670.1_2327229-2327180|NZ_CP013670.1_2327433-2327384|NZ_CP013670.1_2327535-2327486|NZ_CP013670.1_2328555-2328506|NZ_CP013670.1_2331938-2331889|NZ_CP013670.1_2364974-2365023|NZ_CP013670.1_2370532-2370581|NZ_CP013670.1_2371654-2371703|NZ_CP013670.1_2372059-2372108|NZ_CP013670.1_3180905-3180954|NZ_CP013670.1_3181514-3181563|NZ_CP013670.1_3185713-3185762|NZ_CP013670.1_3193428-3193477	NA	1	1	Orphan	cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3,WYL	NA|49aa|up_6|NZ_CP013670.1_3182804_3182951_+,NA|65aa|up_5|NZ_CP013670.1_3183017_3183212_+,NA|100aa|up_4|NZ_CP013670.1_3183215_3183515_+,NA|65aa|up_2|NZ_CP013670.1_3188458_3188653_+,NA|100aa|up_1|NZ_CP013670.1_3188656_3188956_+,NA|65aa|down_0|NZ_CP013670.1_3196173_3196368_+,NA|100aa|down_1|NZ_CP013670.1_3196371_3196671_+,NA|696aa|down_8|NZ_CP013670.1_3209589_3211677_+	NA|181aa|up_9|NZ_CP013670.1_3177080_3177623_+	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif	NA|166aa|up_8|NZ_CP013670.1_3177622_3178120_+	pfam03918, CcmH, Cytochrome C biogenesis protein	NA|235aa|up_7|NZ_CP013670.1_3178119_3178824_+	COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]	NA|49aa|up_6|NZ_CP013670.1_3182804_3182951_+	NA	NA|65aa|up_5|NZ_CP013670.1_3183017_3183212_+	NA	NA|100aa|up_4|NZ_CP013670.1_3183215_3183515_+	NA	NA|1484aa|up_3|NZ_CP013670.1_3183738_3188190_+	pfam03377, TAL_effector, TAL effector repeat	NA|65aa|up_2|NZ_CP013670.1_3188458_3188653_+	NA	NA|100aa|up_1|NZ_CP013670.1_3188656_3188956_+	NA	NA|97aa|up_0|NZ_CP013670.1_3189633_3189924_+	pfam03377, TAL_effector, TAL effector repeat	NA|65aa|down_0|NZ_CP013670.1_3196173_3196368_+	NA	NA|100aa|down_1|NZ_CP013670.1_3196371_3196671_+	NA	NA|1374aa|down_2|NZ_CP013670.1_3196894_3201016_+	pfam03377, TAL_effector, TAL effector repeat	NA|198aa|down_3|NZ_CP013670.1_3201495_3202089_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|494aa|down_4|NZ_CP013670.1_3202078_3203560_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|863aa|down_5|NZ_CP013670.1_3203642_3206231_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|371aa|down_6|NZ_CP013670.1_3206287_3207400_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA|193aa|down_7|NZ_CP013670.1_3207524_3208103_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|696aa|down_8|NZ_CP013670.1_3209589_3211677_+	NA	NA|366aa|down_9|NZ_CP013670.1_3212063_3213161_+	pfam05598, DUF772, Transposase domain (DUF772)
GCF_001746595.1_ASM174659v1	NZ_CP013670	Xanthomonas oryzae pv. oryzae strain PXO71, complete genome	3	4091824-4091996	3	CRISPRCasFinder	no		cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3,WYL	Orphan	CGGCGGTCGTCACGGCGGTCGTC	23	0	0	NA	NA	NA	3	3	Orphan	cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3,WYL	NA|172aa|up_3|NZ_CP013670.1_4086597_4087113_-,NA|90aa|up_0|NZ_CP013670.1_4091197_4091467_+,NA|115aa|down_1|NZ_CP013670.1_4094211_4094556_+	NA|380aa|up_9|NZ_CP013670.1_4081507_4082647_-	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|201aa|up_8|NZ_CP013670.1_4082643_4083246_-	PRK09289, PRK09289, riboflavin synthase	NA|208aa|up_7|NZ_CP013670.1_4083806_4084430_+	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|370aa|up_6|NZ_CP013670.1_4084485_4085595_-	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA|162aa|up_5|NZ_CP013670.1_4085591_4086077_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|175aa|up_4|NZ_CP013670.1_4086073_4086598_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|172aa|up_3|NZ_CP013670.1_4086597_4087113_-	NA	NA|418aa|up_2|NZ_CP013670.1_4087126_4088380_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|785aa|up_1|NZ_CP013670.1_4088565_4090920_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|90aa|up_0|NZ_CP013670.1_4091197_4091467_+	NA	NA|554aa|down_0|NZ_CP013670.1_4092375_4094037_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|115aa|down_1|NZ_CP013670.1_4094211_4094556_+	NA	NA|111aa|down_2|NZ_CP013670.1_4094552_4094885_-	pfam14329, DUF4386, Domain of unknown function (DUF4386)	NA|76aa|down_3|NZ_CP013670.1_4095042_4095270_-	pfam14329, DUF4386, Domain of unknown function (DUF4386)	NA|277aa|down_4|NZ_CP013670.1_4095399_4096230_-	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|370aa|down_5|NZ_CP013670.1_4096931_4098041_-	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|92aa|down_6|NZ_CP013670.1_4098105_4098381_-	cd10153, RcnR-FrmR-like_DUF156, Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156	NA|367aa|down_7|NZ_CP013670.1_4099265_4100366_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|240aa|down_8|NZ_CP013670.1_4100504_4101224_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|500aa|down_9|NZ_CP013670.1_4101220_4102720_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
