assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001746265.1_ASM174626v2	NZ_CP020029	Lactobacillus helveticus strain D75, complete genome	1	457964-458146	1	PILER-CR	no	cas14k	cas14j,cas14k,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	Unclear	CACGCGTGGGTTCAAATCCCACAT	24	0	0	NA	NA	NA	2	2	TypeV	cas14j,cas14k,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	NA|130aa|up_3|NZ_CP020029.1_453243_453633_+,NA|79aa|down_0|NZ_CP020029.1_462056_462293_-	NA|459aa|up_9|NZ_CP020029.1_443170_444547_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|451aa|up_8|NZ_CP020029.1_444911_446264_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|321aa|up_7|NZ_CP020029.1_447750_448713_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|393aa|up_6|NZ_CP020029.1_448731_449910_-	PRK08068, PRK08068, transaminase; Reviewed	NA|262aa|up_5|NZ_CP020029.1_449930_450716_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|67aa|up_4|NZ_CP020029.1_452780_452981_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|130aa|up_3|NZ_CP020029.1_453243_453633_+	NA	NA|167aa|up_2|NZ_CP020029.1_454998_455499_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|203aa|up_1|NZ_CP020029.1_455601_456210_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	cas14k|442aa|up_0|NZ_CP020029.1_456239_457565_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|79aa|down_0|NZ_CP020029.1_462056_462293_-	NA	NA|179aa|down_1|NZ_CP020029.1_462458_462995_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|426aa|down_2|NZ_CP020029.1_463183_464461_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|393aa|down_3|NZ_CP020029.1_466499_467678_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|359aa|down_4|NZ_CP020029.1_468320_469397_+	pfam03217, SLAP, SLAP domain	NA|393aa|down_5|NZ_CP020029.1_469635_470814_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|443aa|down_6|NZ_CP020029.1_473220_474549_-	PRK10720, PRK10720, uracil transporter; Provisional	NA|177aa|down_7|NZ_CP020029.1_474561_475092_-	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|490aa|down_8|NZ_CP020029.1_475377_476847_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|402aa|down_9|NZ_CP020029.1_476870_478076_-	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_001746265.1_ASM174626v2	NZ_CP020029	Lactobacillus helveticus strain D75, complete genome	2	1360958-1361169	1,1,2	CRISPRCasFinder,CRT,PILER-CR	no		cas14j,cas14k,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	Orphan	GGATCACCTCCACATACGTGGAGAATAC,GGATCACCTCCACATACGTGGAGAATAC,GGATCACCTCCACATACGTGGAGAATAC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	3,3,2	3	Orphan	cas14j,cas14k,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	NA|65aa|up_8|NZ_CP020029.1_1351858_1352053_+,NA|99aa|up_4|NZ_CP020029.1_1358206_1358503_-,NA|98aa|up_3|NZ_CP020029.1_1358650_1358944_-,NA|180aa|down_0|NZ_CP020029.1_1361284_1361824_-,NA|121aa|down_1|NZ_CP020029.1_1361835_1362198_-,NA|46aa|down_2|NZ_CP020029.1_1362587_1362725_+,NA|140aa|down_4|NZ_CP020029.1_1366071_1366491_+,NA|169aa|down_6|NZ_CP020029.1_1369623_1370130_+,NA|87aa|down_7|NZ_CP020029.1_1371003_1371264_-,NA|262aa|down_8|NZ_CP020029.1_1371380_1372166_-	NA|208aa|up_9|NZ_CP020029.1_1349461_1350085_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|65aa|up_8|NZ_CP020029.1_1351858_1352053_+	NA	NA|128aa|up_7|NZ_CP020029.1_1352608_1352992_+	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|875aa|up_6|NZ_CP020029.1_1354155_1356780_+	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|412aa|up_5|NZ_CP020029.1_1356836_1358072_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|99aa|up_4|NZ_CP020029.1_1358206_1358503_-	NA	NA|98aa|up_3|NZ_CP020029.1_1358650_1358944_-	NA	NA|221aa|up_2|NZ_CP020029.1_1359045_1359708_+	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit	NA|294aa|up_1|NZ_CP020029.1_1359722_1360604_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|109aa|up_0|NZ_CP020029.1_1360608_1360935_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|180aa|down_0|NZ_CP020029.1_1361284_1361824_-	NA	NA|121aa|down_1|NZ_CP020029.1_1361835_1362198_-	NA	NA|46aa|down_2|NZ_CP020029.1_1362587_1362725_+	NA	NA|323aa|down_3|NZ_CP020029.1_1363728_1364697_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|140aa|down_4|NZ_CP020029.1_1366071_1366491_+	NA	NA|484aa|down_5|NZ_CP020029.1_1367990_1369442_-	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|169aa|down_6|NZ_CP020029.1_1369623_1370130_+	NA	NA|87aa|down_7|NZ_CP020029.1_1371003_1371264_-	NA	NA|262aa|down_8|NZ_CP020029.1_1371380_1372166_-	NA	NA|235aa|down_9|NZ_CP020029.1_1372229_1372934_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins
GCF_001746265.1_ASM174626v2	NZ_CP020029	Lactobacillus helveticus strain D75, complete genome	3	1362306-1362394	2	CRISPRCasFinder	no		cas14j,cas14k,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	Orphan	GGATCACCTCCACATACGTGGAGAATAC	28	0	0	NA	NA	I-B,III-A,III-B	1	1	Orphan	cas14j,cas14k,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	NA|99aa|up_6|NZ_CP020029.1_1358206_1358503_-,NA|98aa|up_5|NZ_CP020029.1_1358650_1358944_-,NA|180aa|up_1|NZ_CP020029.1_1361284_1361824_-,NA|121aa|up_0|NZ_CP020029.1_1361835_1362198_-,NA|46aa|down_0|NZ_CP020029.1_1362587_1362725_+,NA|140aa|down_2|NZ_CP020029.1_1366071_1366491_+,NA|169aa|down_4|NZ_CP020029.1_1369623_1370130_+,NA|87aa|down_5|NZ_CP020029.1_1371003_1371264_-,NA|262aa|down_6|NZ_CP020029.1_1371380_1372166_-	NA|128aa|up_9|NZ_CP020029.1_1352608_1352992_+	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|875aa|up_8|NZ_CP020029.1_1354155_1356780_+	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|412aa|up_7|NZ_CP020029.1_1356836_1358072_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|99aa|up_6|NZ_CP020029.1_1358206_1358503_-	NA	NA|98aa|up_5|NZ_CP020029.1_1358650_1358944_-	NA	NA|221aa|up_4|NZ_CP020029.1_1359045_1359708_+	TIGR00719, Probable_L-serine_dehydratase_beta_chain, L-serine dehydratase, iron-sulfur-dependent, beta subunit	NA|294aa|up_3|NZ_CP020029.1_1359722_1360604_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|109aa|up_2|NZ_CP020029.1_1360608_1360935_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|180aa|up_1|NZ_CP020029.1_1361284_1361824_-	NA	NA|121aa|up_0|NZ_CP020029.1_1361835_1362198_-	NA	NA|46aa|down_0|NZ_CP020029.1_1362587_1362725_+	NA	NA|323aa|down_1|NZ_CP020029.1_1363728_1364697_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|140aa|down_2|NZ_CP020029.1_1366071_1366491_+	NA	NA|484aa|down_3|NZ_CP020029.1_1367990_1369442_-	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|169aa|down_4|NZ_CP020029.1_1369623_1370130_+	NA	NA|87aa|down_5|NZ_CP020029.1_1371003_1371264_-	NA	NA|262aa|down_6|NZ_CP020029.1_1371380_1372166_-	NA	NA|235aa|down_7|NZ_CP020029.1_1372229_1372934_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|136aa|down_8|NZ_CP020029.1_1372953_1373361_-	pfam02566, OsmC, OsmC-like protein	NA|391aa|down_9|NZ_CP020029.1_1373379_1374552_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily
GCF_001746265.1_ASM174626v2	NZ_CP020029	Lactobacillus helveticus strain D75, complete genome	4	1490702-1491326	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6	cas14j,cas14k,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	Unclear	CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC	30,30,30	2	2	1490997-1491032|1490998-1491033	NZ_CP020029.1_985890-985925|NZ_CP020029.1_985890-985925	NA:NA:NA	9,8,7	9	Unclear	cas14j,cas14k,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	NA|177aa|up_7|NZ_CP020029.1_1480112_1480643_-,NA	NA|417aa|up_9|NZ_CP020029.1_1477484_1478735_-	pfam04087, DUF389, Domain of unknown function (DUF389)	NA|106aa|up_8|NZ_CP020029.1_1478741_1479059_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]	NA|177aa|up_7|NZ_CP020029.1_1480112_1480643_-	NA	NA|645aa|up_6|NZ_CP020029.1_1481475_1483410_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|303aa|up_5|NZ_CP020029.1_1483700_1484609_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|444aa|up_4|NZ_CP020029.1_1484641_1485973_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|156aa|up_3|NZ_CP020029.1_1485975_1486443_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|201aa|up_2|NZ_CP020029.1_1486445_1487048_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|277aa|up_1|NZ_CP020029.1_1487044_1487875_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|888aa|up_0|NZ_CP020029.1_1487883_1490547_-	PRK05755, PRK05755, DNA polymerase I; Provisional	cas2|94aa|down_0|NZ_CP020029.1_1493734_1494016_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_1|NZ_CP020029.1_1494021_1495011_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|164aa|down_2|NZ_CP020029.1_1495020_1495512_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|810aa|down_3|NZ_CP020029.1_1495527_1497957_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|238aa|down_4|NZ_CP020029.1_1498099_1498813_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|301aa|down_5|NZ_CP020029.1_1498799_1499702_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|586aa|down_6|NZ_CP020029.1_1499720_1501478_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|252aa|down_7|NZ_CP020029.1_1501495_1502251_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|218aa|down_8|NZ_CP020029.1_1504740_1505394_-	PRK07116, PRK07116, flavodoxin; Provisional	NA|294aa|down_9|NZ_CP020029.1_1505538_1506420_-	pfam01145, Band_7, SPFH domain / Band 7 family
GCF_001746265.1_ASM174626v2	NZ_CP020029	Lactobacillus helveticus strain D75, complete genome	5	1492138-1493550	3,4,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6	cas14j,cas14k,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	Unclear	CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC,CTTTACATTTCTCTTAAGTTAAATAAAAAC	30,30,30	2	2	1493421-1493455|1493486-1493520	NZ_CP020029.1_1661027-1661061|NZ_CP020029.1_1661027-1661061	NA:NA:NA	21,19,20	21	Unclear	cas14j,cas14k,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,cas2,cas1,cas4,cas5,cas7,cas8b2,cas6	NA|177aa|up_7|NZ_CP020029.1_1480112_1480643_-,NA	NA|417aa|up_9|NZ_CP020029.1_1477484_1478735_-	pfam04087, DUF389, Domain of unknown function (DUF389)	NA|106aa|up_8|NZ_CP020029.1_1478741_1479059_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]	NA|177aa|up_7|NZ_CP020029.1_1480112_1480643_-	NA	NA|645aa|up_6|NZ_CP020029.1_1481475_1483410_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|303aa|up_5|NZ_CP020029.1_1483700_1484609_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|444aa|up_4|NZ_CP020029.1_1484641_1485973_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|156aa|up_3|NZ_CP020029.1_1485975_1486443_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|201aa|up_2|NZ_CP020029.1_1486445_1487048_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|277aa|up_1|NZ_CP020029.1_1487044_1487875_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|888aa|up_0|NZ_CP020029.1_1487883_1490547_-	PRK05755, PRK05755, DNA polymerase I; Provisional	cas2|94aa|down_0|NZ_CP020029.1_1493734_1494016_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|330aa|down_1|NZ_CP020029.1_1494021_1495011_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|164aa|down_2|NZ_CP020029.1_1495020_1495512_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|810aa|down_3|NZ_CP020029.1_1495527_1497957_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|238aa|down_4|NZ_CP020029.1_1498099_1498813_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|301aa|down_5|NZ_CP020029.1_1498799_1499702_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|586aa|down_6|NZ_CP020029.1_1499720_1501478_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|252aa|down_7|NZ_CP020029.1_1501495_1502251_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|218aa|down_8|NZ_CP020029.1_1504740_1505394_-	PRK07116, PRK07116, flavodoxin; Provisional	NA|294aa|down_9|NZ_CP020029.1_1505538_1506420_-	pfam01145, Band_7, SPFH domain / Band 7 family
