assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001729245.1_ASM172924v1	NZ_CP015217	Leptospira tipperaryensis strain GWTS#1 chromosome 1, complete sequence	1	519350-519440	1	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,Cas9_archaeal	Orphan	AGGTTGATTATCCAAGTACTTTTTT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,Cas9_archaeal	NA|611aa|up_1|NZ_CP015217.1_516899_518732_-,NA|101aa|down_1|NZ_CP015217.1_521238_521541_-,NA|175aa|down_6|NZ_CP015217.1_526289_526814_-	NA|271aa|up_9|NZ_CP015217.1_507494_508307_+	COG2602, COG2602, Beta-lactamase class D [Defense mechanisms]	NA|161aa|up_8|NZ_CP015217.1_508436_508919_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|305aa|up_7|NZ_CP015217.1_509116_510031_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|275aa|up_6|NZ_CP015217.1_510023_510848_+	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|507aa|up_5|NZ_CP015217.1_510940_512461_+	pfam08668, HDOD, HDOD domain	NA|303aa|up_4|NZ_CP015217.1_512457_513366_-	TIGR00755, Ribosomal_RNA_small_subunit_methyltransferase_A, ribosomal RNA small subunit methyltransferase A	NA|651aa|up_3|NZ_CP015217.1_513328_515281_-	pfam03772, Competence, Competence protein	NA|323aa|up_2|NZ_CP015217.1_515934_516903_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|611aa|up_1|NZ_CP015217.1_516899_518732_-	NA	NA|198aa|up_0|NZ_CP015217.1_518736_519330_-	cd16325, LolA, LolA, a periplasmic chaperone	NA|254aa|down_0|NZ_CP015217.1_520393_521155_-	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|101aa|down_1|NZ_CP015217.1_521238_521541_-	NA	NA|395aa|down_2|NZ_CP015217.1_521621_522806_+	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional	NA|232aa|down_3|NZ_CP015217.1_522802_523498_+	pfam01596, Methyltransf_3, O-methyltransferase	NA|466aa|down_4|NZ_CP015217.1_523500_524898_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|394aa|down_5|NZ_CP015217.1_525007_526189_+	pfam13435, Cytochrome_C554, Cytochrome c554 and c-prime	NA|175aa|down_6|NZ_CP015217.1_526289_526814_-	NA	NA|387aa|down_7|NZ_CP015217.1_527022_528183_-	pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family	NA|771aa|down_8|NZ_CP015217.1_528741_531054_-	cd07328, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase	NA|158aa|down_9|NZ_CP015217.1_531579_532053_+	pfam13646, HEAT_2, HEAT repeats
GCF_001729245.1_ASM172924v1	NZ_CP015217	Leptospira tipperaryensis strain GWTS#1 chromosome 1, complete sequence	2	1095147-1095301	2	CRISPRCasFinder	no	csa3	cas3,csa3,DinG,WYL,Cas9_archaeal	Type I-A	CGACAACGAGAAGAATTTGTTTTTTAGTGATTGATTCGCACTTATACGAAGTTCG	55	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,Cas9_archaeal	NA|130aa|up_0|NZ_CP015217.1_1094628_1095018_+,NA|131aa|down_4|NZ_CP015217.1_1100739_1101132_+,NA|143aa|down_6|NZ_CP015217.1_1101936_1102365_+,NA|172aa|down_7|NZ_CP015217.1_1102465_1102981_+,NA|109aa|down_9|NZ_CP015217.1_1103906_1104233_+	NA|661aa|up_9|NZ_CP015217.1_1086167_1088150_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|134aa|up_8|NZ_CP015217.1_1088230_1088632_-	pfam14248, DUF4345, Domain of unknown function (DUF4345)	NA|87aa|up_7|NZ_CP015217.1_1089347_1089608_-	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown]	NA|142aa|up_6|NZ_CP015217.1_1089929_1090355_-	pfam04828, GFA, Glutathione-dependent formaldehyde-activating enzyme	NA|156aa|up_5|NZ_CP015217.1_1090414_1090882_-	cd08893, SRPBCC_CalC_Aha1-like_GntR-HTH, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain	csa3|115aa|up_4|NZ_CP015217.1_1090868_1091213_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|463aa|up_3|NZ_CP015217.1_1091784_1093173_-	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]	NA|111aa|up_2|NZ_CP015217.1_1093252_1093585_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|253aa|up_1|NZ_CP015217.1_1093592_1094351_+	PRK13957, PRK13957, indole-3-glycerol-phosphate synthase; Provisional	NA|130aa|up_0|NZ_CP015217.1_1094628_1095018_+	NA	NA|354aa|down_0|NZ_CP015217.1_1096350_1097412_+	PRK14465, PRK14465, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA|96aa|down_1|NZ_CP015217.1_1097442_1097730_+	TIGR04453, Lepto_8Cys, Cys-rich protein, LA_1312 family	NA|578aa|down_2|NZ_CP015217.1_1097746_1099480_+	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|134aa|down_3|NZ_CP015217.1_1100064_1100466_+	COG5646, COG5646, Uncharacterized conserved protein [Function unknown]	NA|131aa|down_4|NZ_CP015217.1_1100739_1101132_+	NA	NA|173aa|down_5|NZ_CP015217.1_1101229_1101748_+	pfam08877, MepB, MepB protein	NA|143aa|down_6|NZ_CP015217.1_1101936_1102365_+	NA	NA|172aa|down_7|NZ_CP015217.1_1102465_1102981_+	NA	NA|143aa|down_8|NZ_CP015217.1_1103289_1103718_+	smart00754, CHRD, A domain in the BMP inhibitor chordin and in microbial proteins	NA|109aa|down_9|NZ_CP015217.1_1103906_1104233_+	NA
GCF_001729245.1_ASM172924v1	NZ_CP015217	Leptospira tipperaryensis strain GWTS#1 chromosome 1, complete sequence	3	1350599-1350720	3	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,Cas9_archaeal	Orphan	CGAAGTTCGTATAAACGCCAATAAAACTCAAACCTTCTCGC	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,Cas9_archaeal	NA|175aa|up_6|NZ_CP015217.1_1341350_1341875_-,NA|156aa|up_5|NZ_CP015217.1_1341883_1342351_-,NA|229aa|up_4|NZ_CP015217.1_1342515_1343202_+,NA|203aa|down_1|NZ_CP015217.1_1352262_1352871_-,NA|389aa|down_3|NZ_CP015217.1_1354349_1355516_-	NA|635aa|up_9|NZ_CP015217.1_1336610_1338515_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|159aa|up_8|NZ_CP015217.1_1338550_1339027_+	sd00006, TPR, Tetratricopeptide repeat	NA|189aa|up_7|NZ_CP015217.1_1339491_1340058_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|175aa|up_6|NZ_CP015217.1_1341350_1341875_-	NA	NA|156aa|up_5|NZ_CP015217.1_1341883_1342351_-	NA	NA|229aa|up_4|NZ_CP015217.1_1342515_1343202_+	NA	NA|842aa|up_3|NZ_CP015217.1_1344655_1347181_-	pfam00027, cNMP_binding, Cyclic nucleotide-binding domain	NA|383aa|up_2|NZ_CP015217.1_1347342_1348491_+	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|91aa|up_1|NZ_CP015217.1_1348958_1349231_-	COG5304, COG5304, Uncharacterized protein conserved in bacteria [Function unknown]	NA|128aa|up_0|NZ_CP015217.1_1350115_1350499_-	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|198aa|down_0|NZ_CP015217.1_1350969_1351563_-	pfam01872, RibD_C, RibD C-terminal domain	NA|203aa|down_1|NZ_CP015217.1_1352262_1352871_-	NA	NA|495aa|down_2|NZ_CP015217.1_1352874_1354359_-	cd01171, YXKO-related, B	NA|389aa|down_3|NZ_CP015217.1_1354349_1355516_-	NA	NA|163aa|down_4|NZ_CP015217.1_1355715_1356204_+	PRK14635, PRK14635, ribosome maturation factor RimP	NA|465aa|down_5|NZ_CP015217.1_1356205_1357600_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|912aa|down_6|NZ_CP015217.1_1357666_1360402_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|118aa|down_7|NZ_CP015217.1_1360417_1360771_+	pfam02033, RBFA, Ribosome-binding factor A	NA|310aa|down_8|NZ_CP015217.1_1360727_1361657_+	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like	NA|89aa|down_9|NZ_CP015217.1_1361709_1361976_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed
GCF_001729245.1_ASM172924v1	NZ_CP015217	Leptospira tipperaryensis strain GWTS#1 chromosome 1, complete sequence	4	1358194-1358280	4	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,Cas9_archaeal	Orphan	GGGCGGCGGCTACCAAGGTGGCGG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,Cas9_archaeal	NA|203aa|up_4|NZ_CP015217.1_1352262_1352871_-,NA|389aa|up_2|NZ_CP015217.1_1354349_1355516_-,NA|166aa|down_6|NZ_CP015217.1_1366982_1367480_+	NA|842aa|up_9|NZ_CP015217.1_1344655_1347181_-	pfam00027, cNMP_binding, Cyclic nucleotide-binding domain	NA|383aa|up_8|NZ_CP015217.1_1347342_1348491_+	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|91aa|up_7|NZ_CP015217.1_1348958_1349231_-	COG5304, COG5304, Uncharacterized protein conserved in bacteria [Function unknown]	NA|128aa|up_6|NZ_CP015217.1_1350115_1350499_-	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|198aa|up_5|NZ_CP015217.1_1350969_1351563_-	pfam01872, RibD_C, RibD C-terminal domain	NA|203aa|up_4|NZ_CP015217.1_1352262_1352871_-	NA	NA|495aa|up_3|NZ_CP015217.1_1352874_1354359_-	cd01171, YXKO-related, B	NA|389aa|up_2|NZ_CP015217.1_1354349_1355516_-	NA	NA|163aa|up_1|NZ_CP015217.1_1355715_1356204_+	PRK14635, PRK14635, ribosome maturation factor RimP	NA|465aa|up_0|NZ_CP015217.1_1356205_1357600_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|118aa|down_0|NZ_CP015217.1_1360417_1360771_+	pfam02033, RBFA, Ribosome-binding factor A	NA|310aa|down_1|NZ_CP015217.1_1360727_1361657_+	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like	NA|89aa|down_2|NZ_CP015217.1_1361709_1361976_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|699aa|down_3|NZ_CP015217.1_1361987_1364084_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|429aa|down_4|NZ_CP015217.1_1364100_1365387_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|146aa|down_5|NZ_CP015217.1_1365996_1366434_+	PRK00601, dut, dUTP diphosphatase	NA|166aa|down_6|NZ_CP015217.1_1366982_1367480_+	NA	NA|265aa|down_7|NZ_CP015217.1_1367612_1368407_+	cd05233, SDR_c, classical (c) SDRs	NA|338aa|down_8|NZ_CP015217.1_1368409_1369423_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|196aa|down_9|NZ_CP015217.1_1369551_1370139_+	pfam07081, DUF1349, Protein of unknown function (DUF1349)
GCF_001729245.1_ASM172924v1	NZ_CP015217	Leptospira tipperaryensis strain GWTS#1 chromosome 1, complete sequence	5	1387942-1388061	5	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,Cas9_archaeal	Orphan	TTCTTTTGGAAAACGGCGCAAATCCGAATC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,Cas9_archaeal	NA|53aa|up_0|NZ_CP015217.1_1387428_1387587_-,NA|222aa|down_3|NZ_CP015217.1_1395630_1396296_-	NA|249aa|up_9|NZ_CP015217.1_1377964_1378711_+	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|337aa|up_8|NZ_CP015217.1_1378685_1379696_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|108aa|up_7|NZ_CP015217.1_1379755_1380079_+	pfam02699, YajC, Preprotein translocase subunit	NA|261aa|up_6|NZ_CP015217.1_1380075_1380858_+	TIGR04420, Sec_Non_Glob, Sec region non-globular protein	NA|643aa|up_5|NZ_CP015217.1_1380868_1382797_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|313aa|up_4|NZ_CP015217.1_1382799_1383738_+	PRK13022, secF, protein translocase subunit SecF	NA|429aa|up_3|NZ_CP015217.1_1383737_1385024_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|201aa|up_2|NZ_CP015217.1_1385005_1385608_+	PRK09289, PRK09289, riboflavin synthase	NA|402aa|up_1|NZ_CP015217.1_1385711_1386917_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|53aa|up_0|NZ_CP015217.1_1387428_1387587_-	NA	NA|322aa|down_0|NZ_CP015217.1_1388431_1389397_-	pfam14257, DUF4349, Domain of unknown function (DUF4349)	NA|215aa|down_1|NZ_CP015217.1_1389521_1390166_-	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase	NA|1764aa|down_2|NZ_CP015217.1_1390335_1395627_-	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|222aa|down_3|NZ_CP015217.1_1395630_1396296_-	NA	NA|373aa|down_4|NZ_CP015217.1_1396301_1397420_-	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|470aa|down_5|NZ_CP015217.1_1397517_1398927_+	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism]	NA|227aa|down_6|NZ_CP015217.1_1398993_1399674_+	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|257aa|down_7|NZ_CP015217.1_1399691_1400462_+	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold	NA|236aa|down_8|NZ_CP015217.1_1400538_1401246_+	cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like	NA|357aa|down_9|NZ_CP015217.1_1401437_1402508_-	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter
