The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017020	Xanthomonas citri pv. malvacearum strain MSCT chromosome, complete genome	5004182	1179658	1306085	5004182	capsid,tail,transposase,terminase,holin,head	Stenotrophomonas_phage(25.93%)	105	NA	NA
WP_087942126.1|1179658_1180815_-|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
WP_005915848.1|1181691_1182153_-	cell wall hydrolase	NA	NA	NA	NA	NA
WP_005915850.1|1183515_1185555_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA	NA
WP_005915853.1|1185759_1186782_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005915855.1|1187197_1188295_+	OmpA family protein	NA	NA	NA	NA	NA
WP_011050648.1|1188487_1189003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033479672.1|1189022_1189883_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_005915861.1|1189833_1190226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005915864.1|1190228_1191437_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	26.6	1.1e-19
WP_005915866.1|1191527_1192625_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005915868.1|1192628_1193489_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA	NA
WP_005915870.1|1193485_1194439_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
WP_005915872.1|1194446_1195478_+	sulfate/molybdate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.2	4.4e-25
WP_003490453.1|1195760_1196477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915874.1|1197219_1198242_-	L-threonine 3-dehydrogenase	NA	NA	NA	NA	NA
WP_033481917.1|1198766_1201097_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_005915879.1|1201295_1203377_+|holin	phospholipase C, phosphocholine-specific	holin	NA	NA	NA	NA
WP_011050659.1|1203978_1204164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915881.1|1204257_1204902_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_125825479.1|1204921_1205500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915883.1|1205631_1206930_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_005915885.1|1206997_1208032_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_005915887.1|1208245_1208992_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003483730.1|1209022_1210489_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	39.9	4.1e-85
WP_005915889.1|1210684_1211509_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_005915893.1|1212123_1213377_+	peptidyl-Asp metalloendopeptidase	NA	NA	NA	NA	NA
WP_005915895.1|1213511_1213931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915897.1|1214115_1214859_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_005915899.1|1215343_1215886_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_005915901.1|1215866_1217003_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003483745.1|1217225_1218752_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003483747.1|1218924_1221027_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_005915906.1|1221139_1222468_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	33.3	6.4e-29
WP_003483753.1|1222540_1223230_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
WP_033481919.1|1223412_1225059_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_005915911.1|1225208_1225517_+	glutaredoxin 3	NA	A0A2L0UZG6	Agrobacterium_phage	43.2	3.6e-07
WP_003483760.1|1225513_1225909_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003483762.1|1226135_1227143_+	isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_005915913.1|1227281_1228043_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_005915915.1|1228751_1229378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_089504397.1|1230204_1231291_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_164513526.1|1232057_1232285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_125825480.1|1234090_1234411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005917750.1|1234428_1234881_-	phage virion morphogenesis protein	NA	V9IQH0	Stenotrophomonas_phage	58.8	3.6e-40
WP_005917748.1|1234868_1235288_-|tail	phage tail protein	tail	A0A2H4J906	uncultured_Caudovirales_phage	63.7	7.4e-40
WP_005917746.1|1235284_1235773_-	hypothetical protein	NA	V9IQW8	Stenotrophomonas_phage	50.3	3.8e-27
WP_005917743.1|1235772_1236411_-	glycoside hydrolase family 19 protein	NA	V9IQK6	Stenotrophomonas_phage	60.4	3.9e-48
WP_005917740.1|1236410_1236686_-|holin	phage holin family protein	holin	V9IQV8	Stenotrophomonas_phage	58.6	5.1e-21
WP_005917737.1|1236678_1237035_-	membrane protein	NA	V9IQG9	Stenotrophomonas_phage	56.1	5.9e-22
WP_005917735.1|1237039_1237249_-|tail	tail protein	tail	K4PAW7	Burkholderia_phage	59.4	7.0e-15
WP_005917732.1|1237248_1237716_-|head	head completion/stabilization protein	head	V9IQW6	Stenotrophomonas_phage	49.7	4.1e-31
WP_005917729.1|1237812_1238532_-|terminase	phage-related terminase	terminase	Q9ZXM2	Pseudomonas_virus	62.1	5.0e-68
WP_005917726.1|1238535_1239555_-|capsid	phage major capsid protein, P2 family	capsid	Q9ZXM3	Pseudomonas_virus	70.8	3.9e-135
WP_005917723.1|1239613_1240456_-|capsid	GPO family capsid scaffolding protein	capsid	A0A2H4J928	uncultured_Caudovirales_phage	52.7	8.4e-67
WP_005917720.1|1240577_1242362_+|terminase	terminase ATPase subunit family protein	terminase	V9IQL5	Stenotrophomonas_phage	76.5	2.7e-272
WP_095689862.1|1242680_1243768_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_005918009.1|1243898_1246031_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_005918005.1|1246524_1247412_+	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	32.0	6.0e-31
WP_033479676.1|1247589_1248066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003490678.1|1248091_1248769_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	27.4	7.4e-05
WP_005917998.1|1248761_1250096_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_080598376.1|1250198_1250594_-	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
WP_089504397.1|1251006_1252093_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_125825481.1|1252312_1252699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157733688.1|1252695_1252845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087942126.1|1253775_1254931_+|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
WP_005915836.1|1255480_1256089_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003491180.1|1256102_1256966_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_069288196.1|1256972_1258235_-	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_005915833.1|1258345_1260307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033481911.1|1260373_1260790_-	pilin	NA	NA	NA	NA	NA
WP_157733689.1|1261139_1261517_+	EamA family transporter	NA	NA	NA	NA	NA
WP_005915828.1|1261521_1262316_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_050554799.1|1262318_1263359_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_157733690.1|1263351_1264008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915821.1|1264105_1265842_+	type IV-A pilus assembly ATPase PilB	NA	NA	NA	NA	NA
WP_005915819.1|1265938_1266058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915817.1|1266213_1266357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915815.1|1266543_1267938_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005915814.1|1268262_1269876_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_005915812.1|1270107_1271277_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_005915809.1|1271301_1272177_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA	NA
WP_005915804.1|1272592_1272964_+	endonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_005915802.1|1272986_1274627_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	38.0	1.3e-95
WP_005915800.1|1274645_1275623_-	hypothetical protein	NA	A0A0N9SJH5	Pseudomonas_phage	40.4	8.6e-55
WP_005915798.1|1275909_1276791_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_003488615.1|1276911_1277907_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_033479555.1|1277908_1278721_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_161632298.1|1278705_1279248_+	DUF4166 domain-containing protein	NA	NA	NA	NA	NA
WP_005915791.1|1279234_1279669_+	thiol-disulfide oxidoreductase DCC family protein	NA	NA	NA	NA	NA
WP_005915788.1|1279821_1281690_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.9	6.3e-14
WP_005915786.1|1282409_1284887_-	glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase	NA	NA	NA	NA	NA
WP_003488630.1|1285487_1286855_-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)	NA	NA	NA	NA	NA
WP_005915783.1|1286851_1288630_-	glycoside hydrolase family 15 protein	NA	NA	NA	NA	NA
WP_005915781.1|1288678_1289437_-	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_005915778.1|1289658_1292094_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	23.4	3.7e-14
WP_005915776.1|1292322_1292796_+	DUF3574 domain-containing protein	NA	NA	NA	NA	NA
WP_033481905.1|1292762_1293827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003488646.1|1293964_1295566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005915768.1|1297080_1297899_+	DUF3014 domain-containing protein	NA	NA	NA	NA	NA
WP_003488653.1|1298126_1298834_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005915765.1|1298879_1299188_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_005915762.1|1299557_1301717_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_005915760.1|1301785_1303114_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_087942126.1|1304929_1306085_+|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
>prophage 2
NZ_CP017020	Xanthomonas citri pv. malvacearum strain MSCT chromosome, complete genome	5004182	1781480	1850686	5004182	transposase,tRNA,protease	Staphylococcus_phage(12.5%)	49	NA	NA
WP_005912929.1|1781480_1784123_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	40.2	1.7e-174
WP_005912936.1|1784699_1785344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003486816.1|1785366_1786395_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_033481585.1|1786391_1787261_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_005912943.1|1787317_1787731_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_005912944.1|1787889_1789425_-	DUF839 domain-containing protein	NA	NA	NA	NA	NA
WP_005912945.1|1789546_1790017_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_005912947.1|1790095_1790770_-	energy transducer TonB	NA	NA	NA	NA	NA
WP_005912949.1|1791081_1794192_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_005912951.1|1794543_1795278_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_005912953.1|1795416_1795989_+	Maf-like protein	NA	NA	NA	NA	NA
WP_003486835.1|1795988_1797488_+	ribonuclease G	NA	NA	NA	NA	NA
WP_005912955.1|1797657_1801578_+	TIGR02099 family protein	NA	NA	NA	NA	NA
WP_005912956.1|1801593_1802346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005912957.1|1802445_1803891_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_005912958.1|1804060_1804642_-	ribosome-associated protein	NA	NA	NA	NA	NA
WP_005912967.1|1804789_1806157_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_016849602.1|1806474_1806942_+	DUF4870 domain-containing protein	NA	NA	NA	NA	NA
WP_005912970.1|1807011_1808088_-|protease	protease	protease	NA	NA	NA	NA
WP_003486850.1|1808542_1809418_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003486852.1|1809419_1809680_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033479125.1|1809711_1811013_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_005912972.1|1811382_1813086_-	alkaline phosphatase	NA	NA	NA	NA	NA
WP_005912974.1|1813228_1814569_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_005912975.1|1814578_1815415_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003486865.1|1815649_1816141_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003486867.1|1816348_1817098_-	C40 family peptidase	NA	A0A0K2SUC1	Clostridium_phage	38.5	1.2e-19
WP_003486869.1|1817207_1817750_-	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	39.3	6.1e-18
WP_003486870.1|1817859_1818339_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_005912977.1|1818574_1819819_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_005912978.1|1819826_1821077_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005912980.1|1821073_1822444_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.0	4.9e-40
WP_080598298.1|1822923_1823322_+	cysteine methyltransferase	NA	NA	NA	NA	NA
WP_003486879.1|1823362_1824058_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_005912987.1|1824277_1826293_-	M13 family metallopeptidase	NA	NA	NA	NA	NA
WP_005912989.1|1826477_1828574_-	M13 family metallopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.8	5.7e-72
WP_031423362.1|1828958_1831061_-	peptidase	NA	A0A1V0SHG2	Klosneuvirus	27.6	9.7e-72
WP_005912991.1|1831510_1833106_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005912992.1|1833217_1836280_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_005912994.1|1839987_1840839_+	iron-sulfur cluster carrier protein ApbC	NA	Q8JL10	Natrialba_phage	27.0	9.3e-05
WP_005912996.1|1840935_1841505_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	70.6	4.1e-73
WP_003486896.1|1841660_1841846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003486900.1|1842426_1842594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005912999.1|1842621_1843056_-	HIT family protein	NA	NA	NA	NA	NA
WP_005913000.1|1843052_1843715_-	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_005913001.1|1844281_1845544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_089504397.1|1845582_1846670_-|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_005914316.1|1848602_1849109_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_005914314.1|1849219_1850686_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
>prophage 3
NZ_CP017020	Xanthomonas citri pv. malvacearum strain MSCT chromosome, complete genome	5004182	2509887	2565939	5004182	transposase,tRNA,protease	uncultured_Mediterranean_phage(11.11%)	42	NA	NA
WP_005914460.1|2509887_2511024_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_005914461.1|2511020_2511479_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_005914463.1|2511729_2512050_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	1.0e-12
WP_005914464.1|2512192_2514475_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	44.9	3.9e-175
WP_002813418.1|2514757_2514976_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005914466.1|2515056_2515806_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_005914467.1|2516068_2517187_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003482910.1|2517244_2518213_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.5	1.5e-64
WP_003482906.1|2518496_2520854_+	DNA translocase FtsK	NA	G1D482	Mycobacterium_virus	45.8	2.5e-84
WP_005914468.1|2521004_2522933_+	DUF3857 and transglutaminase domain-containing protein	NA	NA	NA	NA	NA
WP_015472033.1|2522997_2523669_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_033481749.1|2523790_2528044_-	type III effector	NA	NA	NA	NA	NA
WP_003482897.1|2528213_2529587_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.2	1.4e-74
WP_003482896.1|2529765_2530167_+	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_003482893.1|2530483_2531689_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005914474.1|2531845_2534218_-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003482890.1|2534242_2534875_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005914476.1|2535092_2535518_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	40.9	1.3e-18
WP_005921296.1|2535536_2536742_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003482886.1|2536752_2537541_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
WP_005914478.1|2537537_2538398_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005914479.1|2538468_2539107_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_005914480.1|2539106_2540324_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003482878.1|2540334_2541732_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_005914481.1|2542042_2543263_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_005914482.1|2543614_2544757_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_033481750.1|2545003_2547667_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003482865.1|2547749_2547965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005914486.1|2548344_2548917_+	DUF4142 domain-containing protein	NA	NA	NA	NA	NA
WP_005914487.1|2548920_2549451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005914488.1|2549464_2550634_+	glutathione-dependent formaldehyde dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	28.5	1.9e-08
WP_087942126.1|2552162_2553318_+|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
WP_005918020.1|2555259_2555532_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_005934416.1|2555720_2555921_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_078514874.1|2556041_2556593_-	type III effector	NA	NA	NA	NA	NA
WP_154138535.1|2557150_2557327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005918028.1|2557339_2557531_+	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_033455135.1|2557547_2558450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033480615.1|2558449_2559682_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	33.2	4.7e-50
WP_089504397.1|2560310_2561397_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_033837207.1|2562072_2563620_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_005918049.1|2564967_2565939_+|transposase	IS1595-like element IS1595 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017020	Xanthomonas citri pv. malvacearum strain MSCT chromosome, complete genome	5004182	2783448	2855025	5004182	transposase,tRNA,integrase	Tupanvirus(25.0%)	36	2799227:2799286	2847146:2848341
WP_005915362.1|2783448_2784894_-|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	27.5	4.4e-39
WP_162197241.1|2785139_2785763_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033479714.1|2786078_2786822_-	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA	NA
WP_005915357.1|2786922_2788227_-	threonine synthase	NA	NA	NA	NA	NA
WP_005915355.1|2788388_2788703_+	EthD family reductase	NA	NA	NA	NA	NA
WP_078566167.1|2788777_2789746_-	homoserine kinase	NA	NA	NA	NA	NA
WP_005915351.1|2789787_2792295_-	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA	NA
WP_082335458.1|2793463_2794180_-	S-layer family protein	NA	NA	NA	NA	NA
WP_078514811.1|2794736_2794973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005918353.1|2794989_2795370_-	TNT domain-containing protein	NA	NA	NA	NA	NA
2799227:2799286	attL	GGGTAATCCCCCCGCCCATTAGCAGACGCCAGAAGTGGAATTTTCTCGTACCCTTTCCCG	NA	NA	NA	NA
WP_089504397.1|2799296_2800383_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_164513528.1|2809254_2813481_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	29.3	4.1e-21
WP_005916837.1|2813551_2815252_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
WP_005916834.1|2815987_2817946_+	poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA	NA	NA	NA	NA	NA
WP_005916820.1|2817927_2819826_+	poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB	NA	NA	NA	NA	NA
WP_005916817.1|2819829_2821083_+	poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA	NA	NA	NA	NA
WP_005916814.1|2821079_2821526_+	poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD	NA	NA	NA	NA	NA
WP_005916811.1|2822160_2823618_+|integrase	site-specific integrase	integrase	A0A0A0YR56	Pseudomonas_phage	24.8	3.9e-11
WP_069288199.1|2823846_2824401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033481971.1|2824629_2830245_-	DUF3320 domain-containing protein	NA	NA	NA	NA	NA
WP_005916803.1|2830358_2831111_+	abortive infection family protein	NA	NA	NA	NA	NA
WP_033481969.1|2831409_2833053_-	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_005916793.1|2833547_2835362_+	MchC protein	NA	NA	NA	NA	NA
WP_089140893.1|2835478_2836566_-|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_005917781.1|2837033_2838098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005917783.1|2838155_2838656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080598372.1|2838909_2841483_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_080598373.1|2842852_2844847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005917791.1|2844843_2846142_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_089504397.1|2847215_2848302_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_100225295.1|2849675_2850290_+	hypothetical protein	NA	NA	NA	NA	NA
2847146:2848341	attR	GGGTAATCCCCCCGCCCATTAGCAGACGCCAGAAGTGGAATTTTCTCGTACCCTTTCCCGAGGAGGTTCCATGAAGAAGTCCCGCTTTACCGACAGCCAGATCATCGCCGTGCTCAAGCAGGCCCAGGCCGGTGCGCCCGTGCCGGAGCTGTGCCGCGAGCACGGCATCAGCTCGGCCACGTTCTACAAGTGGCGTAGCAAGTTCGGCGGCATGGACGTGTCCATGGTCGCACGCATGAAGGAGTTGGAGGAGGAGAACCGCCGGCTCAAGAAGATGTACGCCGAGGCGCAGCTCAGTACCGACCTGCTGAAGGAAGCGCTCGCAAAAAAATGGTGAGGCCATCTCAGCGACGCGAGATGGCCCAATCGGCAGTCACGAGCGGGCGCACGAACATCCGCCACGCCTGCCAGACCTTCGCGGTGAGCCAGACCTGCTTCCGCTACCAGGCCAAGGCCAGCGAGCAGAACGCCCGGATCGCCGACTGGCTGGTCCGCCTGACGACCGCCCATCGCGACTGGGGCTTTGGCCTGTGCTACCTGTACCTGCGCAACGTGAAGGGCTTTGGCTGGAATCACAAGCGGGTCTACCGGATCTACCGCGAGCTGGAGTTGAACCTGCGGATCAAGCCGAAGAAGCGGCTGGTGCGTGAGCGGCCCGAGCCTCTGGCGGTGCCGGAGGCCATCAACCAGGTCTGGTCGATGGACTTCATGCACGACCAGTTGGCCGACGGCCGCAGCTTCCGGCTGTTCAATGTGCTCGACGACTTCAATCGCGAGGGGCTGGGGATCGAGGTGGATCTGTCGCTGCCGTCAGCCCGGGTGATCCGATCGCTGGAGCAGATCATCGAGTGGCGCGGCAAGCCCGCCGTGATCCGCTGCGACAACGGCCCTGAATACATCAGTGGCGCGTTGCTGTCCTGGGCACAGCGGCTTGGCATCCGGGTCGAGCACATCCAGCCGGGCAAGCCACAGCAGAACGCCTACGTTGAACGCTACAACCGCACCATCCGCTACGCCTGGCTCGCCCGCACCCTGTTCGACACCATCGACCAGGTGCAGGACAAAGCCACCCGCTGGCTATGGACGTACAACCACGAGCGCCCGAATATGGCGCTCGGCGGCATCACGCCTGCCATGAAGTTGGCGATGGCCGCTTAGCTCCACTTCTGGCGACCGCTAGAAGTGGGGGGATTACC	NA	NA	NA	NA
WP_089504397.1|2850399_2851487_-|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_005918561.1|2851572_2851962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005918563.1|2852011_2853325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155270882.1|2853338_2853842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_089504421.1|2853923_2855025_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.6	9.1e-45
>prophage 5
NZ_CP017020	Xanthomonas citri pv. malvacearum strain MSCT chromosome, complete genome	5004182	2937491	2948269	5004182	tRNA	uncultured_Caudovirales_phage(16.67%)	7	NA	NA
WP_033479136.1|2937491_2939450_-	PAS domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	42.8	9.6e-13
WP_003481884.1|2940749_2940962_-	carbon storage regulator CsrA	NA	J7I430	Pseudomonas_phage	76.5	1.3e-13
WP_005915037.1|2941101_2943750_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	40.0	4.3e-85
WP_003481873.1|2943851_2944340_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_003481871.1|2944658_2945693_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	61.3	5.1e-114
WP_005915033.1|2945865_2946507_-	transcriptional repressor LexA	NA	A0A1W6JNS2	Morganella_phage	40.2	2.4e-13
WP_005915030.1|2946592_2948269_-	2-polyprenylphenol 6-hydroxylase	NA	G8DDN0	Micromonas_pusilla_virus	29.4	1.9e-41
>prophage 6
NZ_CP017020	Xanthomonas citri pv. malvacearum strain MSCT chromosome, complete genome	5004182	3717704	3754881	5004182	transposase,protease,integrase	Leptospira_phage(28.57%)	33	3727031:3727046	3759645:3759660
WP_003483788.1|3717704_3718991_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.9	5.3e-137
WP_002806026.1|3719116_3719743_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.4	1.0e-56
WP_005913863.1|3719835_3721128_-	trigger factor	NA	NA	NA	NA	NA
WP_005913860.1|3721662_3722931_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_125825507.1|3723149_3723344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005913859.1|3723546_3724536_-	chemotaxis protein CheB	NA	NA	NA	NA	NA
WP_089504397.1|3724882_3725969_+|transposase	IS3-like element ISXac2 family transposase	transposase	NA	NA	NA	NA
WP_089504421.1|3726205_3727308_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.6	9.1e-45
3727031:3727046	attL	ACGCGCCGGTGCGCTC	NA	NA	NA	NA
WP_087942126.1|3727886_3729043_-|transposase	IS3-like element ISXc8 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	37.5	2.1e-39
WP_005917827.1|3729226_3729619_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005917824.1|3729890_3730115_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_005917821.1|3730121_3731108_+	patatin-like phospholipase family protein	NA	A0A1B2LRS3	Wolbachia_phage	27.9	1.8e-23
WP_005917818.1|3731117_3732254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005917815.1|3732250_3733885_+	UBA/THIF-type NAD/FAD-binding protein	NA	NA	NA	NA	NA
WP_033482039.1|3733872_3734349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007971690.1|3734953_3735787_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_033482037.1|3735789_3736536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005917807.1|3736532_3738191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095689870.1|3740096_3741198_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	1.2e-44
WP_100225287.1|3741398_3741476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080598327.1|3741539_3743651_-	DNA cytosine methyltransferase	NA	K4HZD0	Acidithiobacillus_phage	25.6	3.2e-14
WP_005914556.1|3744929_3745997_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_005914555.1|3746089_3746323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914554.1|3746460_3747135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914552.1|3747238_3747877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033481760.1|3748977_3749169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914550.1|3749457_3749952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914549.1|3749992_3750499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914548.1|3751766_3751991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005914547.1|3752164_3752560_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_125825509.1|3752825_3753029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_125825510.1|3753029_3753527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033481756.1|3753555_3754881_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
3759645:3759660	attR	GAGCGCACCGGCGCGT	NA	NA	NA	NA
>prophage 7
NZ_CP017020	Xanthomonas citri pv. malvacearum strain MSCT chromosome, complete genome	5004182	4132759	4144528	5004182		Enterobacteria_phage(37.5%)	11	NA	NA
WP_005913455.1|4132759_4134106_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	27.1	7.5e-33
WP_005913454.1|4134151_4135555_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	30.0	1.1e-47
WP_005913453.1|4135837_4137004_-	nucleotide sugar dehydrogenase	NA	M1HZB2	Paramecium_bursaria_Chlorella_virus	58.1	4.7e-116
WP_005913452.1|4137343_4138243_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.2	3.1e-27
WP_005913451.1|4138239_4138797_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	48.9	1.1e-43
WP_005913450.1|4138793_4139681_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	57.5	8.5e-94
WP_005913448.1|4139732_4140788_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	47.1	1.4e-82
WP_005913446.1|4141008_4141755_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_005913442.1|4141754_4142699_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_005920793.1|4142862_4143591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005913435.1|4143571_4144528_+	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	27.1	1.8e-25
>prophage 1
NZ_CP017023	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT60kb, complete sequence	60533	0	10900	60533	transposase	Shigella_phage(100.0%)	5	NA	NA
WP_005918428.1|2152_2851_+	UPF0149 family protein	NA	NA	NA	NA	NA
WP_069288208.1|3549_8064_-	avirulence protein	NA	NA	NA	NA	NA
WP_095689879.1|8280_8448_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033482107.1|8491_9637_-	DUF4236 domain-containing protein	NA	NA	NA	NA	NA
WP_095689877.1|9755_10900_-|transposase	IS3-like element ISXc8 family transposase	transposase	U5P429	Shigella_phage	41.0	7.7e-47
>prophage 2
NZ_CP017023	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT60kb, complete sequence	60533	19510	20598	60533	transposase	Leptospira_phage(100.0%)	1	NA	NA
WP_089504397.1|19510_20598_-|transposase	IS3-like element ISXac2 family transposase	transposase	S5WIU1	Leptospira_phage	36.8	2.9e-43
>prophage 3
NZ_CP017023	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT60kb, complete sequence	60533	26981	29483	60533		Enterobacteria_phage(50.0%)	5	NA	NA
WP_005918378.1|26981_27533_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	50.0	1.7e-39
WP_005918376.1|27580_27787_-	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_005918374.1|27802_28609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005918372.1|28625_28841_-	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_005918369.1|28853_29483_-	AAA family ATPase	NA	A2I303	Vibrio_virus	55.8	6.7e-53
>prophage 4
NZ_CP017023	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT60kb, complete sequence	60533	38756	40320	60533		Vibrio_phage(50.0%)	3	NA	NA
WP_033482061.1|38756_39407_-	ParA family protein	NA	D4HTX7	Vibrio_phage	31.0	8.3e-14
WP_005918086.1|39505_39706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005918089.1|39702_40320_-	recombinase family protein	NA	A0A286S1P7	Klebsiella_phage	44.8	1.3e-32
>prophage 5
NZ_CP017023	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT60kb, complete sequence	60533	44768	45870	60533	transposase	Leptospira_phage(100.0%)	1	NA	NA
WP_095689870.1|44768_45870_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	41.9	1.2e-44
>prophage 6
NZ_CP017023	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT60kb, complete sequence	60533	49301	50458	60533	transposase	Shigella_phage(100.0%)	1	NA	NA
WP_125825525.1|49301_50458_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	4.6e-47
>prophage 7
NZ_CP017023	Xanthomonas citri pv. malvacearum strain MSCT plasmid pMSCT60kb, complete sequence	60533	54107	58814	60533	transposase	Leptospira_phage(50.0%)	5	NA	NA
WP_089504397.1|54107_55195_-|transposase	IS3-like element ISXac2 family transposase	transposase	S5WIU1	Leptospira_phage	36.8	2.9e-43
WP_069288214.1|55274_55973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005918301.1|56062_56350_-	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_005918303.1|56515_56977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003491216.1|57890_58814_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.4	2.8e-39
