assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001718955.1_ASM171895v1	NZ_CP013459	Burkholderia stagnalis strain MSMB735WGS chromosome 1, complete sequence	1	1295465-1295595	1	CRISPRCasFinder	no	cas14j	cas14j,WYL,cas3,Cas14u_CAS-V,RT,DEDDh,csa3,DinG	Unclear	AACAAACCGGGACAGGCGAAACCCCAAGCACACCGTAGGTAACAA	45	0	0	NA	NA	NA	1	1	TypeV	cas14j,WYL,cas3,Cas14u_CAS-V,RT,DEDDh,csa3,DinG,c2c9_V-U4,PD-DExK	NA,NA	NA|333aa|up_9|NZ_CP013459.1_1284388_1285387_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|391aa|up_8|NZ_CP013459.1_1286014_1287187_+	TIGR03472, HpnI, hopanoid biosynthesis associated glycosyl transferase protein HpnI	NA|474aa|up_7|NZ_CP013459.1_1287299_1288721_+	TIGR03471, HpnJ, hopanoid biosynthesis associated radical SAM protein HpnJ	NA|295aa|up_6|NZ_CP013459.1_1288724_1289609_+	TIGR03473, HpnK, hopanoid biosynthesis associated protein HpnK	NA|344aa|up_5|NZ_CP013459.1_1289602_1290634_+	TIGR03476, HpnL, putative membrane protein	NA|186aa|up_4|NZ_CP013459.1_1290754_1291312_+	pfam12988, DUF3872, Domain of unknown function, B	NA|230aa|up_3|NZ_CP013459.1_1291571_1292261_+	PRK15135, PRK15135, histidine ABC transporter permease HisQ	NA|238aa|up_2|NZ_CP013459.1_1292257_1292971_+	PRK15069, PRK15069, histidine ABC transporter permease HisM	NA|265aa|up_1|NZ_CP013459.1_1292992_1293787_+	COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]	NA|348aa|up_0|NZ_CP013459.1_1293809_1294853_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|411aa|down_0|NZ_CP013459.1_1295727_1296960_+	PRK05093, argD, acetylornithine/succinyldiaminopimelate transaminase	NA|352aa|down_1|NZ_CP013459.1_1296990_1298046_+	TIGR03245, arg_AOST_alph, arginine/ornithine succinyltransferase, alpha subunit	NA|344aa|down_2|NZ_CP013459.1_1298042_1299074_+	TIGR03244, arg_catab_AstA, arginine N-succinyltransferase	NA|488aa|down_3|NZ_CP013459.1_1299081_1300545_+	PRK09457, astD, succinylglutamic semialdehyde dehydrogenase; Reviewed	NA|447aa|down_4|NZ_CP013459.1_1300559_1301900_+	PRK13281, PRK13281, N-succinylarginine dihydrolase	NA|352aa|down_5|NZ_CP013459.1_1301883_1302939_+	PRK05324, PRK05324, succinylglutamate desuccinylase; Provisional	NA|265aa|down_6|NZ_CP013459.1_1303202_1303997_+	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|497aa|down_7|NZ_CP013459.1_1304090_1305581_-	pfam08668, HDOD, HDOD domain	NA|612aa|down_8|NZ_CP013459.1_1305612_1307448_-	cd01948, EAL, EAL domain	NA|183aa|down_9|NZ_CP013459.1_1307632_1308181_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides
GCF_001718955.1_ASM171895v1	NZ_CP013459	Burkholderia stagnalis strain MSMB735WGS chromosome 1, complete sequence	2	1726553-1726775	1	PILER-CR	no		cas14j,WYL,cas3,Cas14u_CAS-V,RT,DEDDh,csa3,DinG	Orphan	CGCCGGTGACCGTCGACACGAGGCCCGTGACCGGGGCGAGCGGGCTGCCGCCGCCTGCGCC	61	1	6	1726614-1726633|1726614-1726633|1726614-1726633|1726614-1726633|1726614-1726633|1726614-1726633	NZ_CP013459.1_1726452-1726471|NZ_CP013459.1_1726851-1726870|NZ_CP013459.1_365360-365379|NZ_CP013459.1_1069803-1069822|NZ_CP013461.1_455672-455691|NZ_CP013461.1_1563236-1563255	NA	2	2	Orphan	cas14j,WYL,cas3,Cas14u_CAS-V,RT,DEDDh,csa3,DinG,c2c9_V-U4,PD-DExK	NA,NA	NA|165aa|up_9|NZ_CP013459.1_1711741_1712236_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|609aa|up_8|NZ_CP013459.1_1712578_1714405_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|955aa|up_7|NZ_CP013459.1_1714724_1717589_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|425aa|up_6|NZ_CP013459.1_1717721_1718996_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|477aa|up_5|NZ_CP013459.1_1719077_1720508_+	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated	NA|366aa|up_4|NZ_CP013459.1_1720605_1721703_+	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|138aa|up_3|NZ_CP013459.1_1721858_1722272_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|154aa|up_2|NZ_CP013459.1_1722371_1722833_-	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147)	NA|563aa|up_1|NZ_CP013459.1_1723003_1724692_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|460aa|up_0|NZ_CP013459.1_1724827_1726207_-	pfam15984, Collagen_mid, Bacterial collagen, middle region	NA|58aa|down_0|NZ_CP013459.1_1728594_1728768_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|167aa|down_1|NZ_CP013459.1_1728854_1729355_+	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|157aa|down_2|NZ_CP013459.1_1729351_1729822_+	pfam07811, TadE, TadE-like protein	NA|302aa|down_3|NZ_CP013459.1_1729908_1730814_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|445aa|down_4|NZ_CP013459.1_1730893_1732228_+	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]	NA|434aa|down_5|NZ_CP013459.1_1732273_1733575_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|453aa|down_6|NZ_CP013459.1_1733578_1734937_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|333aa|down_7|NZ_CP013459.1_1734929_1735928_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|338aa|down_8|NZ_CP013459.1_1735932_1736946_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|292aa|down_9|NZ_CP013459.1_1736969_1737845_+	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
GCF_001718955.1_ASM171895v1	NZ_CP013459	Burkholderia stagnalis strain MSMB735WGS chromosome 1, complete sequence	3	2259902-2259976	2	CRISPRCasFinder	no		cas14j,WYL,cas3,Cas14u_CAS-V,RT,DEDDh,csa3,DinG	Orphan	CTGTCGATTCAGAGTTGGCGCTTTG	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,Cas14u_CAS-V,RT,DEDDh,csa3,DinG,c2c9_V-U4,PD-DExK	NA,NA	NA|340aa|up_9|NZ_CP013459.1_2249842_2250862_-	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism]	NA|346aa|up_8|NZ_CP013459.1_2251205_2252243_+	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only]	NA|282aa|up_7|NZ_CP013459.1_2252316_2253162_+	pfam05742, TANGO2, Transport and Golgi organisation 2	NA|147aa|up_6|NZ_CP013459.1_2253180_2253621_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|320aa|up_5|NZ_CP013459.1_2253650_2254610_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|333aa|up_4|NZ_CP013459.1_2254672_2255671_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|160aa|up_3|NZ_CP013459.1_2255798_2256278_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|105aa|up_2|NZ_CP013459.1_2256274_2256589_-	smart00886, Dabb, Stress responsive A/B Barrel Domain	NA|467aa|up_1|NZ_CP013459.1_2257009_2258410_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|393aa|up_0|NZ_CP013459.1_2258713_2259892_-	PRK07108, PRK07108, acetyl-CoA C-acyltransferase	NA|211aa|down_0|NZ_CP013459.1_2260016_2260649_-	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|695aa|down_1|NZ_CP013459.1_2260686_2262771_-	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|548aa|down_2|NZ_CP013459.1_2262934_2264578_-	PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated	NA|526aa|down_3|NZ_CP013459.1_2264733_2266311_+	PRK00029, PRK00029, YdiU family protein	NA|144aa|down_4|NZ_CP013459.1_2266349_2266781_+	pfam01641, SelR, SelR domain	NA|177aa|down_5|NZ_CP013459.1_2266895_2267426_+	PRK00259, PRK00259, intracellular septation protein A; Reviewed	NA|107aa|down_6|NZ_CP013459.1_2267427_2267748_+	pfam01722, BolA, BolA-like protein	NA|260aa|down_7|NZ_CP013459.1_2267757_2268537_+	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|177aa|down_8|NZ_CP013459.1_2268632_2269163_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|1355aa|down_9|NZ_CP013459.1_2269167_2273232_-	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional
GCF_001718955.1_ASM171895v1	NZ_CP013459	Burkholderia stagnalis strain MSMB735WGS chromosome 1, complete sequence	4	3163714-3163812	3	CRISPRCasFinder	no		cas14j,WYL,cas3,Cas14u_CAS-V,RT,DEDDh,csa3,DinG	Orphan	CGCCTGAGCGGCGCTCTCCCGGCCT	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,Cas14u_CAS-V,RT,DEDDh,csa3,DinG,c2c9_V-U4,PD-DExK	NA|92aa|up_5|NZ_CP013459.1_3156798_3157074_+,NA|169aa|down_6|NZ_CP013459.1_3170851_3171358_-	NA|325aa|up_9|NZ_CP013459.1_3153374_3154349_-	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|340aa|up_8|NZ_CP013459.1_3154494_3155514_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|228aa|up_7|NZ_CP013459.1_3155640_3156324_+	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|104aa|up_6|NZ_CP013459.1_3156396_3156708_+	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain	NA|92aa|up_5|NZ_CP013459.1_3156798_3157074_+	NA	NA|95aa|up_4|NZ_CP013459.1_3157155_3157440_-	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension	NA|129aa|up_3|NZ_CP013459.1_3157577_3157964_-	pfam01124, MAPEG, MAPEG family	NA|440aa|up_2|NZ_CP013459.1_3158161_3159481_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|1029aa|up_1|NZ_CP013459.1_3159905_3162992_+	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|116aa|up_0|NZ_CP013459.1_3163001_3163349_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|239aa|down_0|NZ_CP013459.1_3163849_3164566_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|383aa|down_1|NZ_CP013459.1_3164665_3165814_+	PRK14017, PRK14017, galactonate dehydratase; Provisional	NA|311aa|down_2|NZ_CP013459.1_3165863_3166796_-	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|255aa|down_3|NZ_CP013459.1_3167181_3167946_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|433aa|down_4|NZ_CP013459.1_3167965_3169264_+	pfam00034, Cytochrom_C, Cytochrome c	NA|488aa|down_5|NZ_CP013459.1_3169394_3170858_+	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|169aa|down_6|NZ_CP013459.1_3170851_3171358_-	NA	NA|276aa|down_7|NZ_CP013459.1_3171427_3172255_-	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	NA|547aa|down_8|NZ_CP013459.1_3172559_3174200_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|260aa|down_9|NZ_CP013459.1_3174416_3175196_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
GCF_001718955.1_ASM171895v1	NZ_CP013461	Burkholderia stagnalis strain MSMB735WGS chromosome 2, complete sequence	1	2250185-2250280	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas14j,Cas14u_CAS-V,DinG,PD-DExK	Orphan	CGACACGCTGCCGTTGATCGTGCC	24	0	0	NA	NA	NA	1	1	Orphan	cas14j,WYL,cas3,Cas14u_CAS-V,RT,DEDDh,csa3,DinG,c2c9_V-U4,PD-DExK	NA|84aa|up_1|NZ_CP013461.1_2242548_2242800_-,NA|58aa|down_0|NZ_CP013461.1_2251022_2251196_+,NA|214aa|down_8|NZ_CP013461.1_2259856_2260498_+	NA|118aa|up_9|NZ_CP013461.1_2235142_2235496_-	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown]	NA|209aa|up_8|NZ_CP013461.1_2235666_2236293_-	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|183aa|up_7|NZ_CP013461.1_2236404_2236953_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|221aa|up_6|NZ_CP013461.1_2237068_2237731_+	PRK10643, PRK10643, two-component system response regulator PmrA	NA|460aa|up_5|NZ_CP013461.1_2237727_2239107_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|67aa|up_4|NZ_CP013461.1_2239543_2239744_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|294aa|up_3|NZ_CP013461.1_2240169_2241051_-	PRK15442, PRK15442, beta-lactamase TEM; Provisional	NA|297aa|up_2|NZ_CP013461.1_2241165_2242056_+	cd08487, PBP2_BlaA, The C-terminal substrate-binding domain of LysR-type trnascriptional regulator BlaA which involved in control of the beta-lactamase gene expression; contains the type 2 periplasmic binding fold	NA|84aa|up_1|NZ_CP013461.1_2242548_2242800_-	NA	NA|740aa|up_0|NZ_CP013461.1_2242894_2245114_-	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism]	NA|58aa|down_0|NZ_CP013461.1_2251022_2251196_+	NA	NA|345aa|down_1|NZ_CP013461.1_2251630_2252665_-	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional	NA|797aa|down_2|NZ_CP013461.1_2252911_2255302_+	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1	NA|377aa|down_3|NZ_CP013461.1_2255323_2256454_-	PRK10604, PRK10604, sensor protein RstB; Provisional	NA|237aa|down_4|NZ_CP013461.1_2256511_2257222_-	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional	NA|305aa|down_5|NZ_CP013461.1_2257470_2258385_+	PRK00971, PRK00971, glutaminase; Provisional	NA|52aa|down_6|NZ_CP013461.1_2258558_2258714_-	pfam11752, DUF3309, Protein of unknown function (DUF3309)	NA|244aa|down_7|NZ_CP013461.1_2258894_2259626_-	cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far	NA|214aa|down_8|NZ_CP013461.1_2259856_2260498_+	NA	NA|186aa|down_9|NZ_CP013461.1_2260534_2261092_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
