The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	806081	893727	2877915	protease,holin,integrase,capsid,terminase,portal,tail,head	Staphylococcus_phage(92.31%)	112	819948:819965	844879:844896
WP_000197635.1|806081_806825_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|806999_807284_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240645.1|807359_808976_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000128898.1|809677_809890_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_001293058.1|809886_810477_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_001797573.1|810794_811172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022887.1|811336_811780_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001045079.1|812632_813940_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000825510.1|814100_815012_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000812010.1|815073_815919_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000206639.1|816290_817514_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791407.1|817948_819004_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595324.1|819025_820042_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
819948:819965	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000857199.1|821160_822198_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_001549185.1|822388_823102_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000705246.1|823179_823362_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|823565_823907_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|823912_824845_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|824860_825574_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_001801500.1|825536_825710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101519186.1|825706_825970_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	98.9	2.1e-40
WP_001025404.1|825985_826201_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000180411.1|826189_826519_-	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001148642.1|826569_827322_+	phage antirepressor KilAC domain-containing protein	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_001001356.1|827337_827514_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_000549548.1|827510_827741_-	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001120199.1|827799_828120_+	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_001285960.1|828116_828278_+	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001549178.1|828372_828633_+	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_000291513.1|828672_828933_+	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001205732.1|828941_829205_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700561.1|829213_831157_+	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_000138475.1|831158_832079_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071665632.1|832159_832777_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000934753.1|832777_833248_+	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_000148333.1|833277_834171_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338530.1|834177_834396_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401977.1|834404_834809_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000101288.1|834821_835190_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131383.1|835193_835436_+	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_001549172.1|835444_835816_+	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_001065101.1|835808_836045_+	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_000700108.1|836034_836277_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_000181819.1|836269_836803_+	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_001282074.1|836839_837085_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|837081_837288_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|837284_837671_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|837667_837817_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000265043.1|837816_838017_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|838044_838461_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|838692_838992_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|839121_839466_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625088.1|839462_841124_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|841139_842327_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|842310_843048_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|843071_844217_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|844236_844521_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|844510_844795_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|844778_845141_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
844879:844896	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000114229.1|845137_845542_+	HK97 gp10 family phage protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000565500.1|845538_845943_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000260578.1|845946_846591_+|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_094969769.1|846617_846857_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_001096354.1|846906_847257_+	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_001549167.1|847307_847445_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001551779.1|847501_852031_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_000567394.1|852027_853512_+|tail	phage tail family protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_000582165.1|853527_857313_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_001153681.1|857302_857455_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|857501_857789_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|857846_858143_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|858292_858469_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|858521_858629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|858680_858935_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|858946_859702_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|859892_860384_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000727649.1|861463_861913_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|862597_862948_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|863000_863261_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|863571_863751_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001549158.1|864708_866463_+	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_001068542.1|867087_868374_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|868573_868672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|868914_869091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|869354_869735_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991302.1|869731_870628_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|870628_871309_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|871305_872178_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|872177_872918_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|872983_873547_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|873667_874192_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|874251_874809_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|874805_875648_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188077.1|875704_876745_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|877195_877369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|877941_878343_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181322.1|878612_879641_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021214.1|879760_881140_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001790680.1|881191_881365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|881559_882489_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|882541_883102_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275730.1|883473_884571_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000323167.1|884775_886338_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|886348_886456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177817.1|886527_887322_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897635.1|887341_888418_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284431.1|888601_890071_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000040873.1|890063_890885_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000011538.1|891155_891758_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669862.1|891738_891912_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434933.1|892203_892530_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827748.1|892560_893727_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 2
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	953639	1054854	2877915	tRNA,transposase,protease	Staphylococcus_phage(87.72%)	99	NA	NA
WP_001549130.1|953639_955001_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|955493_956555_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649907.1|956812_958270_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000590809.1|958262_958985_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000379978.1|959135_960263_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181398.1|960267_960738_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|960896_961496_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|961520_961673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|962449_962845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|963040_964426_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|964888_965710_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437967.1|965872_966985_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|967006_967630_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|967985_968450_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992527.1|968628_969753_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|969821_970166_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001791795.1|970548_970647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|970937_972134_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584648.1|972123_975060_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|975056_975998_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|976118_977081_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|977285_977843_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|978575_978941_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|979082_979505_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216878.1|979638_980379_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_001245769.1|980371_981595_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|981718_982222_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001790154.1|982384_982495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|982484_983522_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|983579_984503_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167538.1|984526_985927_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|986249_986804_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000226886.1|990060_990600_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000473596.1|991398_992334_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782464.1|992335_993319_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000416759.1|993560_993704_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000416756.1|994440_994584_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092605.1|994648_997642_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000566596.1|997634_998879_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_000504439.1|998894_999413_+	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|999422_1000796_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|1000818_1001511_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581552.1|1001507_1002269_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_000586140.1|1002265_1002964_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092763.1|1003437_1004004_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_001039435.1|1004967_1005675_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001039447.1|1005799_1006522_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001038867.1|1006579_1007299_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038704.1|1007419_1008139_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|1008087_1008195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|1008296_1009013_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038688.1|1009163_1009883_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001791797.1|1009947_1010082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174672422.1|1010245_1011802_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.8	3.7e-286
WP_000072576.1|1011794_1012994_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000831218.1|1013843_1017956_+	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_001037045.1|1018476_1018854_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791893.1|1019201_1019303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|1019425_1019521_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001549059.1|1019723_1019867_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070811.1|1020470_1020854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1020864_1021041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000809857.1|1021042_1021228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000494956.1|1021341_1021983_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000414205.1|1022200_1022752_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000627551.1|1022849_1023194_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000070653.1|1023936_1024932_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_001795535.1|1025012_1025663_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_011443643.1|1025965_1026421_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000348360.1|1026579_1028058_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_000778523.1|1028062_1029064_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000718107.1|1029060_1029318_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|1029383_1029857_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_101519210.1|1029861_1030608_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000639100.1|1031066_1031468_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	36.3	5.7e-13
WP_000109906.1|1031603_1033196_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|1033566_1034760_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366154.1|1034884_1035793_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000453320.1|1036004_1036838_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_101519188.1|1036900_1038538_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	96.5	1.2e-282
WP_000623471.1|1038933_1039287_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200541.1|1039283_1039649_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000091445.1|1039904_1040207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|1040466_1041180_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|1041619_1042255_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030465.1|1042550_1042994_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001153742.1|1042980_1043424_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|1043536_1044007_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|1044205_1044430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|1044705_1045560_+	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|1045854_1046250_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989121.1|1046267_1047560_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|1047559_1047874_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261677.1|1048396_1049899_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000077344.1|1050379_1051423_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_000493892.1|1051429_1052062_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159022.1|1052072_1053254_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008551.1|1053266_1053731_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|1053852_1054854_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 3
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	1058014	1070743	2877915	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_000764419.1|1058014_1058578_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|1058574_1059528_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|1059637_1060819_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001549041.1|1061106_1063524_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_000836465.1|1063545_1063857_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_050956380.1|1064182_1070743_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 4
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	1196209	1205252	2877915	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|1196209_1197214_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|1197215_1198241_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|1198263_1199403_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|1199421_1199682_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|1199956_1202236_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|1202438_1204712_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|1204733_1205252_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 5
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	1274390	1282702	2877915	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217261.1|1274390_1276190_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_001283055.1|1276413_1277520_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624584.1|1277650_1278328_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683931.1|1278330_1279431_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|1279544_1280891_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|1280900_1281791_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|1281916_1282702_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 6
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	1343520	1425771	2877915	protease,holin,integrase,capsid,tRNA,terminase,portal,plate,tail,head	Staphylococcus_phage(85.33%)	103	1343496:1343516	1389389:1389409
1343496:1343516	attL	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_000264751.1|1343520_1344726_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_000191466.1|1344851_1345466_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_001795334.1|1345462_1345609_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000449655.1|1345698_1346094_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755722.1|1346122_1346557_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000525001.1|1346574_1347036_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000429766.1|1347048_1347378_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|1347538_1347730_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001001356.1|1347813_1347990_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001548903.1|1347986_1348226_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001036299.1|1348272_1348488_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001124198.1|1348512_1348776_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000829612.1|1349041_1349359_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_000163431.1|1349351_1349654_+	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000291481.1|1349658_1349919_+	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000985979.1|1349932_1350295_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000762552.1|1350291_1351458_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000645048.1|1351483_1352041_+	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_001801657.1|1352108_1354061_+	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_001164629.1|1354073_1354259_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|1354258_1354660_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022728.1|1354659_1354917_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000235324.1|1354919_1355120_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000132194.1|1355134_1355377_+	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_001065039.1|1355391_1355640_+	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000185671.1|1355632_1356169_+	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_000195794.1|1356205_1356412_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000141180.1|1356408_1356612_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000608275.1|1356604_1356841_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000592202.1|1356833_1357220_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000595263.1|1357216_1357369_+	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000265252.1|1357436_1357637_+	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000884870.1|1357924_1360372_+	virulence-associated E family protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_001801650.1|1360480_1360579_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_001548892.1|1360712_1361003_+	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801648.1|1360983_1362351_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_000528512.1|1362363_1362801_+	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_000160686.1|1362957_1363272_+	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000778933.1|1363398_1363704_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000153540.1|1363693_1365385_+|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_001100664.1|1365389_1366628_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000061866.1|1366611_1367385_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001142734.1|1367396_1368560_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|1368628_1368907_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|1368918_1369251_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|1369247_1369649_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|1369649_1370045_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|1370079_1370721_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169127.1|1370812_1371268_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|1371325_1371676_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|1371717_1371876_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_101519193.1|1371889_1378090_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_001190533.1|1378089_1378914_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|1378922_1380506_+|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|1380505_1380796_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|1380811_1382722_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067127.1|1382721_1384188_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_001166599.1|1384187_1384577_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|1384569_1384734_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|1384779_1385079_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339146.1|1385214_1385517_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000909220.1|1385527_1386982_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000239545.1|1387371_1388310_+	beta-channel forming cytolysin	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_024937002.1|1388305_1389289_+	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000470336.1|1389537_1389723_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.7e-25
1389389:1389409	attR	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_101519194.1|1389813_1390731_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000472936.1|1390787_1391726_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1391718_1391925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1391939_1392854_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001789947.1|1393052_1393172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001186912.1|1393450_1393996_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151997.1|1394101_1394350_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|1394457_1395411_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000902119.1|1395400_1396780_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_000069282.1|1396932_1398393_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_001789943.1|1398517_1398634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001174260.1|1398794_1399781_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000681756.1|1399895_1400864_-	asparaginase	NA	NA	NA	NA	NA
WP_000644391.1|1400940_1401600_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_001789945.1|1401630_1401747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001789944.1|1401863_1402055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000133954.1|1402311_1403487_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000165536.1|1403708_1405019_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000161738.1|1405035_1406034_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001043863.1|1406204_1406477_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450553.1|1406907_1407480_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|1407482_1408208_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001096471.1|1408209_1409169_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|1409260_1409710_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|1409918_1410119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269929.1|1410504_1411671_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000776323.1|1411696_1412761_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000245895.1|1412770_1414069_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000389524.1|1414075_1415320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000004947.1|1415333_1415909_+	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000152734.1|1415898_1416486_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_001827022.1|1416557_1417238_+	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000839926.1|1417574_1417892_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000690027.1|1418132_1419275_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000361544.1|1419279_1420482_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000049919.1|1420468_1421440_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|1421463_1424157_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858789.1|1424478_1425771_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
>prophage 7
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	1867514	1875987	2877915		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|1867514_1868081_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|1868083_1869112_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|1869104_1870589_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|1870567_1872757_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|1872749_1873421_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|1873422_1873686_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|1873685_1874390_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010412.1|1874393_1875518_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|1875504_1875987_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 8
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	1895972	1943556	2877915	protease,bacteriocin	Enterococcus_phage(20.0%)	48	NA	NA
WP_001088780.1|1895972_1897154_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|1897191_1897521_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|1897759_1898581_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150195.1|1898573_1899377_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526687.1|1899363_1901037_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190626.1|1901023_1902385_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|1902566_1903505_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620953.1|1903556_1904108_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867357.1|1904272_1904488_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_001790177.1|1904551_1904683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|1904728_1905688_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1906164_1906521_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719184.1|1906609_1908091_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410720.1|1908096_1908384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795544.1|1908662_1908953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571178.1|1909040_1909682_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_000668623.1|1909678_1909999_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870806.1|1910001_1911966_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001790097.1|1912009_1912282_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|1912291_1912393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|1913309_1913912_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|1913926_1914103_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668820.1|1914301_1915288_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|1915368_1915587_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|1915796_1916366_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414177.1|1916852_1918364_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021864.1|1918502_1919861_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_076035548.1|1919877_1922202_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|1922420_1923224_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049959.1|1923525_1925088_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_001795833.1|1925087_1925348_-	YueH family protein	NA	NA	NA	NA	NA
WP_000340118.1|1925331_1926813_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_000258650.1|1927245_1928421_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001154222.1|1928398_1929589_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600392.1|1929701_1930211_-	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001288681.1|1930404_1931163_-	esterase family protein	NA	NA	NA	NA	NA
WP_000570699.1|1931304_1932873_-	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000933105.1|1933214_1934300_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000933195.1|1934494_1935265_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000395153.1|1935542_1937387_-	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000062417.1|1937396_1938782_-	magnesium transporter	NA	NA	NA	NA	NA
WP_000669939.1|1938802_1939657_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_001270834.1|1939653_1940463_-	NAD kinase	NA	NA	NA	NA	NA
WP_001077683.1|1940479_1941115_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001242102.1|1941131_1941479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|1941664_1942258_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_000214075.1|1942361_1942727_+	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000896697.1|1942749_1943556_+|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
>prophage 9
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	2040302	2056131	2877915	capsid,integrase	Staphylococcus_phage(64.71%)	21	2039623:2039639	2053579:2053595
2039623:2039639	attL	TTATTTAGCAGGAATAA	NA	NA	NA	NA
WP_001035618.1|2040302_2040857_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
WP_000801979.1|2041091_2042060_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_000253084.1|2042488_2042980_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_000657538.1|2043163_2044222_-|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000884055.1|2044208_2044415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081424.1|2044639_2044984_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000985235.1|2045654_2048027_-	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001103959.1|2048118_2048367_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
WP_000403840.1|2048367_2048751_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001231376.1|2048752_2048956_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000784892.1|2048922_2049096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000091732.1|2049107_2049380_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_000243849.1|2049372_2049636_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_001260004.1|2049828_2050161_+	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000281658.1|2050172_2050631_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001033321.1|2050647_2051376_+	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000734020.1|2051399_2052128_+	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_000266158.1|2052215_2053436_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000732326.1|2053578_2054400_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
2053579:2053595	attR	TTATTTAGCAGGAATAA	NA	NA	NA	NA
WP_000520233.1|2054417_2055113_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000571218.1|2055105_2056131_-	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
>prophage 10
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	2134841	2149572	2877915		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|2134841_2135603_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245577.1|2135599_2136556_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|2136542_2137514_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|2137552_2137708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|2138221_2139193_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|2139310_2141416_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|2141378_2141777_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|2142577_2143444_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|2143463_2143964_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193752.1|2144304_2145810_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001790641.1|2145887_2145989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429014.1|2146079_2146997_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000197273.1|2147620_2148163_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|2148513_2149572_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 11
NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2877915	2161544	2169364	2877915		Pandoravirus(16.67%)	10	NA	NA
WP_001217785.1|2161544_2162696_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_000604514.1|2162679_2163273_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|2163623_2164292_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|2164293_2164713_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|2164716_2165430_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|2165528_2166113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|2166392_2166833_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|2167174_2167648_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|2167622_2168309_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244412.1|2168308_2169364_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
