assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001717725.1_ASM171772v2	NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	1	118785-118958	1,1	PILER-CR,CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	18	118838-118854|118838-118854|118838-118854|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923|118908-118923	NZ_CP016863.1_2106362-2106378|NZ_CP016863.1_2106417-2106433|NZ_CP016863.1_2641591-2641575|NZ_CP016863.1_284396-284411|NZ_CP016863.1_908284-908299|NZ_CP016863.1_908342-908357|NZ_CP016863.1_1479482-1479497|NZ_CP016863.1_1564351-1564366|NZ_CP016863.1_1568763-1568748|NZ_CP016863.1_1776864-1776849|NZ_CP016863.1_1877477-1877492|NZ_CP016863.1_2057340-2057355|NZ_CP016863.1_2559815-2559800|NZ_CP016863.1_471001-471016|NZ_CP016863.1_1075676-1075661|NZ_CP016863.1_1254250-1254265|NZ_CP016863.1_1522695-1522710|NZ_CP016863.1_1780832-1780817	NA:NA	2,1	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|60aa|up_1|NZ_CP016863.1_115744_115924_+,NA	NA|205aa|up_9|NZ_CP016863.1_109462_110077_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP016863.1_110069_111320_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP016863.1_111335_112349_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP016863.1_112317_112896_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP016863.1_112892_113471_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP016863.1_113463_114168_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP016863.1_114164_114923_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP016863.1_114919_115552_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP016863.1_115744_115924_+	NA	NA|681aa|up_0|NZ_CP016863.1_116644_118687_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP016863.1_119133_120186_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP016863.1_120172_121045_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP016863.1_121041_121347_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP016863.1_121310_122549_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP016863.1_122712_123273_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP016863.1_124120_124783_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP016863.1_124799_125492_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP016863.1_125488_126256_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP016863.1_126490_126991_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP016863.1_126993_127470_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_001717725.1_ASM171772v2	NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	2	560180-560373	1	CRT	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	13	560203-560235|560203-560235|560203-560235|560203-560235|560259-560294|560259-560294|560259-560294|560259-560294|560318-560350|560318-560350|560318-560350|560318-560350|560318-560350	NZ_CP016863.1_284379-284411|NZ_CP016863.1_1568780-1568748|NZ_CP016863.1_1776881-1776849|NZ_CP016863.1_2100925-2100957|NZ_CP016863.1_1776937-1776902|NZ_CP016863.1_1075807-1075772|NZ_CP016863.1_908383-908418|NZ_CP016863.1_1254291-1254326|NZ_CP016863.1_284379-284411|NZ_CP016863.1_1479465-1479497|NZ_CP016863.1_1568780-1568748|NZ_CP016863.1_1776881-1776849|NZ_CP016863.1_2100925-2100957	NA	3	3	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|57aa|down_0|NZ_CP016863.1_560432_560603_-,NA|84aa|down_5|NZ_CP016863.1_563742_563994_-,NA|106aa|down_8|NZ_CP016863.1_569118_569436_-,NA|55aa|down_9|NZ_CP016863.1_569680_569845_-	NA|202aa|up_9|NZ_CP016863.1_553074_553680_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP016863.1_553849_554854_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP016863.1_554884_555391_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP016863.1_555392_555887_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP016863.1_555949_557209_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP016863.1_557205_557691_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP016863.1_557704_558151_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP016863.1_558156_558390_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP016863.1_558396_558996_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP016863.1_559015_560038_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP016863.1_560432_560603_-	NA	NA|117aa|down_1|NZ_CP016863.1_560728_561079_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP016863.1_561180_562392_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP016863.1_562384_562825_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP016863.1_562986_563751_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP016863.1_563742_563994_-	NA	NA|422aa|down_6|NZ_CP016863.1_564382_565648_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP016863.1_565764_568932_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP016863.1_569118_569436_-	NA	NA|55aa|down_9|NZ_CP016863.1_569680_569845_-	NA
GCF_001717725.1_ASM171772v2	NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	3	684143-684293	2	CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,cas3,DinG	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|31aa|up_2|NZ_CP016863.1_681502_681595_-,NA|35aa|up_0|NZ_CP016863.1_683706_683811_+,NA|364aa|down_0|NZ_CP016863.1_684310_685402_-,NA|77aa|down_5|NZ_CP016863.1_689190_689421_+	NA|369aa|up_9|NZ_CP016863.1_671115_672222_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP016863.1_672221_672656_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP016863.1_672667_674800_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP016863.1_674834_676373_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP016863.1_677053_678859_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP016863.1_679090_679873_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP016863.1_679940_680798_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP016863.1_681502_681595_-	NA	NA|379aa|up_1|NZ_CP016863.1_681883_683020_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP016863.1_683706_683811_+	NA	NA|364aa|down_0|NZ_CP016863.1_684310_685402_-	NA	NA|327aa|down_1|NZ_CP016863.1_685667_686648_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP016863.1_686649_686970_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP016863.1_687121_687787_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP016863.1_688221_689160_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP016863.1_689190_689421_+	NA	NA|458aa|down_6|NZ_CP016863.1_690092_691466_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP016863.1_691923_692337_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP016863.1_692536_692980_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP016863.1_693100_693811_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_001717725.1_ASM171772v2	NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	4	919107-919185	3	CRISPRCasFinder	no	DEDDh	WYL,csa3,DEDDh,cas3,DinG	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	6	919130-919162|919130-919162|919130-919162|919130-919162|919130-919162|919130-919162	NZ_CP016863.1_284379-284411|NZ_CP016863.1_1254233-1254265|NZ_CP016863.1_1568780-1568748|NZ_CP016863.1_1776881-1776849|NZ_CP016863.1_2100925-2100957|NZ_CP016863.1_1479465-1479497	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|31aa|up_6|NZ_CP016863.1_913772_913865_+,NA|37aa|up_2|NZ_CP016863.1_916870_916981_+,NA|138aa|up_1|NZ_CP016863.1_917009_917423_+,NA|129aa|down_1|NZ_CP016863.1_920342_920729_+,NA|92aa|down_6|NZ_CP016863.1_924714_924990_-	NA|177aa|up_9|NZ_CP016863.1_911088_911619_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP016863.1_911865_912936_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP016863.1_913003_913558_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP016863.1_913772_913865_+	NA	NA|167aa|up_5|NZ_CP016863.1_913946_914447_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP016863.1_914738_916052_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP016863.1_916053_916785_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP016863.1_916870_916981_+	NA	NA|138aa|up_1|NZ_CP016863.1_917009_917423_+	NA	NA|329aa|up_0|NZ_CP016863.1_917853_918840_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP016863.1_919367_920126_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP016863.1_920342_920729_+	NA	NA|234aa|down_2|NZ_CP016863.1_920743_921445_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP016863.1_921441_922485_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP016863.1_922474_923104_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP016863.1_923219_924437_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP016863.1_924714_924990_-	NA	NA|155aa|down_7|NZ_CP016863.1_924996_925461_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP016863.1_925607_925808_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP016863.1_925810_927067_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_001717725.1_ASM171772v2	NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	5	1994601-1994909	2,4	CRT,CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	4	1994714-1994739|1994714-1994739|1994828-1994853|1994854-1994886	NZ_CP016863.1_2100937-2100912|NZ_CP016863.1_2559820-2559845|NZ_CP016863.1_2138031-2138056|NZ_CP016863.1_2057365-2057333	NA:NA	4,1	4	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|301aa|up_9|NZ_CP016863.1_1978725_1979628_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP016863.1_1979793_1983447_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP016863.1_1983447_1986924_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP016863.1_1987083_1987659_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP016863.1_1987674_1988199_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP016863.1_1988203_1988779_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP016863.1_1989103_1990435_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP016863.1_1990785_1991991_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP016863.1_1991980_1993360_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP016863.1_1993601_1994531_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP016863.1_1995033_1996278_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP016863.1_1996386_1997577_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP016863.1_1997884_1999012_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP016863.1_1999373_1999751_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP016863.1_2000166_2000760_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP016863.1_2000823_2001207_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP016863.1_2001337_2003743_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP016863.1_2003735_2004164_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|114aa|down_8|NZ_CP016863.1_2004163_2004505_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP016863.1_2004497_2005994_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_001717725.1_ASM171772v2	NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	6	2057613-2057694	5	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	2057637-2057670|2057637-2057670	NZ_CP016863.1_1479510-1479543|NZ_CP016863.1_1568735-1568702	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|111aa|up_9|NZ_CP016863.1_2049828_2050161_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|153aa|up_8|NZ_CP016863.1_2050172_2050631_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|243aa|up_7|NZ_CP016863.1_2050647_2051376_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|up_6|NZ_CP016863.1_2051399_2052128_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|407aa|up_5|NZ_CP016863.1_2052215_2053436_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|274aa|up_4|NZ_CP016863.1_2053578_2054400_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP016863.1_2054417_2055113_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP016863.1_2055105_2056131_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP016863.1_2056380_2056677_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP016863.1_2056669_2057056_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP016863.1_2057797_2058676_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP016863.1_2058854_2059235_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP016863.1_2059392_2059749_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP016863.1_2059892_2060213_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP016863.1_2060362_2060902_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP016863.1_2060984_2061701_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP016863.1_2061848_2062271_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP016863.1_2062669_2063164_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP016863.1_2063318_2063936_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|194aa|down_9|NZ_CP016863.1_2064008_2064590_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_001717725.1_ASM171772v2	NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	7	2093581-2093673	6	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|153aa|up_6|NZ_CP016863.1_2085110_2085569_-,NA	NA|791aa|up_9|NZ_CP016863.1_2081548_2083921_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|NZ_CP016863.1_2083954_2084695_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|NZ_CP016863.1_2084810_2085044_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|NZ_CP016863.1_2085110_2085569_-	NA	NA|435aa|up_5|NZ_CP016863.1_2085908_2087213_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|NZ_CP016863.1_2087342_2088860_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|NZ_CP016863.1_2088862_2089624_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|NZ_CP016863.1_2089745_2090936_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|NZ_CP016863.1_2091074_2092085_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|NZ_CP016863.1_2092137_2093151_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|NZ_CP016863.1_2093910_2094540_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|NZ_CP016863.1_2095241_2096144_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|NZ_CP016863.1_2096386_2096974_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|NZ_CP016863.1_2097547_2098492_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|NZ_CP016863.1_2098601_2099597_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|NZ_CP016863.1_2099593_2100505_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_6|NZ_CP016863.1_2101384_2102320_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_7|NZ_CP016863.1_2102386_2103826_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_8|NZ_CP016863.1_2103833_2104319_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_9|NZ_CP016863.1_2104326_2105166_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed
GCF_001717725.1_ASM171772v2	NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	8	2100938-2101023	7	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	2100968-2100993|2100968-2100993	NZ_CP016863.1_2138056-2138031|NZ_CP016863.1_2138000-2137975	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|254aa|up_9|NZ_CP016863.1_2088862_2089624_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP016863.1_2089745_2090936_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP016863.1_2091074_2092085_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP016863.1_2092137_2093151_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP016863.1_2093910_2094540_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP016863.1_2095241_2096144_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP016863.1_2096386_2096974_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP016863.1_2097547_2098492_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP016863.1_2098601_2099597_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP016863.1_2099593_2100505_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP016863.1_2101384_2102320_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP016863.1_2102386_2103826_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP016863.1_2103833_2104319_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP016863.1_2104326_2105166_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP016863.1_2105171_2106104_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP016863.1_2106765_2109612_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP016863.1_2109619_2111605_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP016863.1_2111873_2112110_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_8|NZ_CP016863.1_2112106_2112757_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_9|NZ_CP016863.1_2112930_2113770_-	COG3942, COG3942, Surface antigen [General function prediction only]
GCF_001717725.1_ASM171772v2	NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	9	2276741-2276833	8	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|239aa|up_5|NZ_CP016863.1_2271608_2272325_-,NA|169aa|up_4|NZ_CP016863.1_2272486_2272993_-,NA|36aa|down_3|NZ_CP016863.1_2280240_2280348_-	NA|168aa|up_9|NZ_CP016863.1_2267290_2267794_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|179aa|up_8|NZ_CP016863.1_2267774_2268311_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|125aa|up_7|NZ_CP016863.1_2270026_2270401_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP016863.1_2270651_2271440_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP016863.1_2271608_2272325_-	NA	NA|169aa|up_4|NZ_CP016863.1_2272486_2272993_-	NA	NA|267aa|up_3|NZ_CP016863.1_2273128_2273929_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP016863.1_2273912_2274632_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP016863.1_2274686_2275637_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_CP016863.1_2275784_2276672_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP016863.1_2277050_2277686_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP016863.1_2278073_2279735_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_CP016863.1_2279731_2280148_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP016863.1_2280240_2280348_-	NA	NA|337aa|down_4|NZ_CP016863.1_2280422_2281433_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP016863.1_2281931_2282453_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP016863.1_2282480_2283776_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP016863.1_2283815_2284292_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP016863.1_2284460_2284997_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP016863.1_2285207_2286146_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_001717725.1_ASM171772v2	NZ_CP016863	Staphylococcus aureus subsp. aureus strain 1625.C01 chromosome, complete genome	10	2521078-2521179	9	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|179aa|up_7|NZ_CP016863.1_2512696_2513233_+,NA|221aa|up_1|NZ_CP016863.1_2519324_2519987_+,NA|34aa|down_0|NZ_CP016863.1_2521851_2521953_-,NA|128aa|down_6|NZ_CP016863.1_2528187_2528571_+,NA|70aa|down_8|NZ_CP016863.1_2529395_2529605_+	NA|91aa|up_9|NZ_CP016863.1_2510928_2511201_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP016863.1_2511599_2512304_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP016863.1_2512696_2513233_+	NA	NA|514aa|up_6|NZ_CP016863.1_2513345_2514887_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP016863.1_2514911_2516378_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP016863.1_2516415_2517684_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP016863.1_2517683_2518262_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP016863.1_2518774_2519182_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP016863.1_2519324_2519987_+	NA	NA|319aa|up_0|NZ_CP016863.1_2520104_2521061_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|34aa|down_0|NZ_CP016863.1_2521851_2521953_-	NA	NA|463aa|down_1|NZ_CP016863.1_2522037_2523426_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP016863.1_2523506_2524262_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP016863.1_2524753_2525323_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP016863.1_2525338_2526862_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP016863.1_2527306_2527933_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP016863.1_2528187_2528571_+	NA	NA|194aa|down_7|NZ_CP016863.1_2528636_2529218_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP016863.1_2529395_2529605_+	NA	NA|84aa|down_9|NZ_CP016863.1_2529643_2529895_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
