assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001717705.1_ASM171770v2	NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	1	425823-426131	1,1	CRT,CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	4	425936-425961|426050-426075|426050-426075|426076-426108	NZ_CP016861.1_977026-977051|NZ_CP016861.1_518204-518179|NZ_CP016861.1_555242-555267|NZ_CP016861.1_474632-474600	NA:NA	4,1	4	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA,NA	NA|301aa|up_9|NZ_CP016861.1_409947_410850_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP016861.1_411015_414669_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP016861.1_414669_418146_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP016861.1_418305_418881_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP016861.1_418896_419421_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP016861.1_419425_420001_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP016861.1_420325_421657_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP016861.1_422007_423213_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP016861.1_423202_424582_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP016861.1_424823_425753_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP016861.1_426255_427500_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP016861.1_427608_428799_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP016861.1_429106_430234_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP016861.1_430595_430973_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP016861.1_431388_431982_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP016861.1_432045_432429_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP016861.1_432559_434965_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP016861.1_434957_435386_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|114aa|down_8|NZ_CP016861.1_435385_435727_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP016861.1_435719_437216_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_001717705.1_ASM171770v2	NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	2	474880-474961	2	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	474904-474937|474904-474937	NZ_CP016861.1_2774923-2774956|NZ_CP016861.1_2864148-2864115	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA,NA	NA|417aa|up_9|NZ_CP016861.1_465363_466614_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP016861.1_466719_468027_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP016861.1_468124_468886_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP016861.1_469213_470065_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP016861.1_470297_470492_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP016861.1_470845_471667_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP016861.1_471684_472380_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP016861.1_472372_473398_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP016861.1_473647_473944_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP016861.1_473936_474323_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP016861.1_475064_475943_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP016861.1_476121_476502_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP016861.1_476659_477016_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP016861.1_477159_477480_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP016861.1_477629_478169_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP016861.1_478251_478968_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP016861.1_479115_479538_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP016861.1_479936_480431_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP016861.1_480585_481203_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|194aa|down_9|NZ_CP016861.1_481275_481857_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_001717705.1_ASM171770v2	NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	3	510848-510940	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|153aa|up_6|NZ_CP016861.1_502377_502836_-,NA	NA|791aa|up_9|NZ_CP016861.1_498815_501188_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|247aa|up_8|NZ_CP016861.1_501221_501962_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|up_7|NZ_CP016861.1_502077_502311_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|153aa|up_6|NZ_CP016861.1_502377_502836_-	NA	NA|435aa|up_5|NZ_CP016861.1_503175_504480_-	PRK00077, eno, enolase; Provisional	NA|506aa|up_4|NZ_CP016861.1_504609_506127_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|254aa|up_3|NZ_CP016861.1_506129_506891_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_2|NZ_CP016861.1_507012_508203_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_1|NZ_CP016861.1_508341_509352_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_0|NZ_CP016861.1_509404_510418_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|down_0|NZ_CP016861.1_511177_511807_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|down_1|NZ_CP016861.1_512508_513411_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|down_2|NZ_CP016861.1_513653_514241_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|down_3|NZ_CP016861.1_514814_515759_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|down_4|NZ_CP016861.1_515868_516864_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|down_5|NZ_CP016861.1_516860_517772_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_6|NZ_CP016861.1_518595_519531_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_7|NZ_CP016861.1_519597_521037_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_8|NZ_CP016861.1_521044_521530_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_9|NZ_CP016861.1_521537_522377_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed
GCF_001717705.1_ASM171770v2	NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	4	693952-694044	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|239aa|up_5|NZ_CP016861.1_688819_689536_-,NA|169aa|up_4|NZ_CP016861.1_689697_690204_-,NA|36aa|down_3|NZ_CP016861.1_697451_697559_-	NA|168aa|up_9|NZ_CP016861.1_684501_685005_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|179aa|up_8|NZ_CP016861.1_684985_685522_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|125aa|up_7|NZ_CP016861.1_687237_687612_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP016861.1_687862_688651_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP016861.1_688819_689536_-	NA	NA|169aa|up_4|NZ_CP016861.1_689697_690204_-	NA	NA|267aa|up_3|NZ_CP016861.1_690339_691140_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP016861.1_691123_691843_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP016861.1_691897_692848_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_CP016861.1_692995_693883_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP016861.1_694261_694897_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP016861.1_695284_696946_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_CP016861.1_696942_697359_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP016861.1_697451_697559_-	NA	NA|337aa|down_4|NZ_CP016861.1_697633_698644_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP016861.1_699142_699664_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP016861.1_699691_700987_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP016861.1_701026_701503_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP016861.1_701671_702208_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP016861.1_702418_703357_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_001717705.1_ASM171770v2	NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	5	938284-938385	5	CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|179aa|up_7|NZ_CP016861.1_929902_930439_+,NA|221aa|up_1|NZ_CP016861.1_936530_937193_+,NA|34aa|down_0|NZ_CP016861.1_939057_939159_-,NA|128aa|down_6|NZ_CP016861.1_945393_945777_+,NA|70aa|down_8|NZ_CP016861.1_946601_946811_+	NA|91aa|up_9|NZ_CP016861.1_928134_928407_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP016861.1_928805_929510_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP016861.1_929902_930439_+	NA	NA|514aa|up_6|NZ_CP016861.1_930551_932093_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP016861.1_932117_933584_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP016861.1_933621_934890_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP016861.1_934889_935468_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP016861.1_935980_936388_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP016861.1_936530_937193_+	NA	NA|319aa|up_0|NZ_CP016861.1_937310_938267_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|34aa|down_0|NZ_CP016861.1_939057_939159_-	NA	NA|463aa|down_1|NZ_CP016861.1_939243_940632_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP016861.1_940712_941468_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP016861.1_941959_942529_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP016861.1_942544_944068_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP016861.1_944512_945139_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP016861.1_945393_945777_+	NA	NA|194aa|down_7|NZ_CP016861.1_945842_946424_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP016861.1_946601_946811_+	NA	NA|84aa|down_9|NZ_CP016861.1_946849_947101_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_001717705.1_ASM171770v2	NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	6	1414285-1414458	1,6	PILER-CR,CRISPRCasFinder	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	23	1414338-1414354|1414338-1414354|1414338-1414354|1414338-1414354|1414338-1414354|1414338-1414354|1414338-1414354|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423|1414408-1414423	NZ_CP016861.1_523573-523589|NZ_CP016861.1_523628-523644|NZ_CP016861.1_1058797-1058781|NZ_CP016860.1_22525-22509|NZ_CP016860.1_23711-23695|NZ_CP016860.1_24521-24505|NZ_CP016860.1_35041-35057|NZ_CP016861.1_208085-208070|NZ_CP016861.1_308698-308713|NZ_CP016861.1_474607-474622|NZ_CP016861.1_518209-518224|NZ_CP016861.1_977021-977006|NZ_CP016861.1_1579759-1579774|NZ_CP016861.1_2203645-2203660|NZ_CP016861.1_2203703-2203718|NZ_CP016861.1_2774895-2774910|NZ_CP016861.1_2859764-2859779|NZ_CP016861.1_2864176-2864161|NZ_CP016861.1_212053-212038|NZ_CP016861.1_1766365-1766380|NZ_CP016861.1_2371097-2371082|NZ_CP016861.1_2549662-2549677|NZ_CP016861.1_2818108-2818123	NA:NA	2,1	2	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|60aa|up_1|NZ_CP016861.1_1411244_1411424_+,NA	NA|205aa|up_9|NZ_CP016861.1_1404962_1405577_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP016861.1_1405569_1406820_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP016861.1_1406835_1407849_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP016861.1_1407817_1408396_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP016861.1_1408392_1408971_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP016861.1_1408963_1409668_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP016861.1_1409664_1410423_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP016861.1_1410419_1411052_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP016861.1_1411244_1411424_+	NA	NA|681aa|up_0|NZ_CP016861.1_1412144_1414187_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP016861.1_1414633_1415686_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP016861.1_1415672_1416545_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP016861.1_1416541_1416847_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP016861.1_1416810_1418049_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP016861.1_1418212_1418773_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP016861.1_1419620_1420283_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP016861.1_1420299_1420992_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP016861.1_1420988_1421756_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP016861.1_1421990_1422491_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP016861.1_1422493_1422970_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_001717705.1_ASM171770v2	NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	7	1855544-1855737	2	CRT	no		DEDDh,cas3,WYL,csa3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	12	1855567-1855599|1855567-1855599|1855567-1855599|1855567-1855599|1855623-1855658|1855623-1855658|1855623-1855658|1855623-1855658|1855682-1855714|1855682-1855714|1855682-1855714|1855682-1855714	NZ_CP016861.1_208102-208070|NZ_CP016861.1_518192-518224|NZ_CP016861.1_1579742-1579774|NZ_CP016861.1_2864193-2864161|NZ_CP016861.1_208158-208123|NZ_CP016861.1_2371228-2371193|NZ_CP016861.1_2203744-2203779|NZ_CP016861.1_2549703-2549738|NZ_CP016861.1_208102-208070|NZ_CP016861.1_1579742-1579774|NZ_CP016861.1_2774878-2774910|NZ_CP016861.1_2864193-2864161	NA	3	3	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA,NA|57aa|down_0|NZ_CP016861.1_1855796_1855967_-,NA|84aa|down_5|NZ_CP016861.1_1859106_1859358_-,NA|106aa|down_8|NZ_CP016861.1_1864482_1864800_-,NA|55aa|down_9|NZ_CP016861.1_1865044_1865209_-	NA|202aa|up_9|NZ_CP016861.1_1848438_1849044_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP016861.1_1849213_1850218_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP016861.1_1850248_1850755_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP016861.1_1850756_1851251_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP016861.1_1851313_1852573_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP016861.1_1852569_1853055_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP016861.1_1853068_1853515_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP016861.1_1853520_1853754_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP016861.1_1853760_1854360_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP016861.1_1854379_1855402_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP016861.1_1855796_1855967_-	NA	NA|117aa|down_1|NZ_CP016861.1_1856092_1856443_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP016861.1_1856544_1857756_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP016861.1_1857748_1858189_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP016861.1_1858350_1859115_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP016861.1_1859106_1859358_-	NA	NA|422aa|down_6|NZ_CP016861.1_1859746_1861012_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP016861.1_1861128_1864296_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP016861.1_1864482_1864800_-	NA	NA|55aa|down_9|NZ_CP016861.1_1865044_1865209_-	NA
GCF_001717705.1_ASM171770v2	NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	8	1979505-1979655	7	CRISPRCasFinder	no	csa3	DEDDh,cas3,WYL,csa3,DinG	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|31aa|up_2|NZ_CP016861.1_1976864_1976957_-,NA|35aa|up_0|NZ_CP016861.1_1979068_1979173_+,NA|364aa|down_0|NZ_CP016861.1_1979672_1980764_-,NA|77aa|down_5|NZ_CP016861.1_1984552_1984783_+	NA|369aa|up_9|NZ_CP016861.1_1966477_1967584_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP016861.1_1967583_1968018_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP016861.1_1968029_1970162_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP016861.1_1970196_1971735_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP016861.1_1972415_1974221_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP016861.1_1974452_1975235_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP016861.1_1975302_1976160_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP016861.1_1976864_1976957_-	NA	NA|379aa|up_1|NZ_CP016861.1_1977245_1978382_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP016861.1_1979068_1979173_+	NA	NA|364aa|down_0|NZ_CP016861.1_1979672_1980764_-	NA	NA|327aa|down_1|NZ_CP016861.1_1981029_1982010_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP016861.1_1982011_1982332_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP016861.1_1982483_1983149_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP016861.1_1983583_1984522_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP016861.1_1984552_1984783_+	NA	NA|458aa|down_6|NZ_CP016861.1_1985454_1986828_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP016861.1_1987285_1987699_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP016861.1_1987898_1988342_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP016861.1_1988462_1989173_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_001717705.1_ASM171770v2	NZ_CP016861	Staphylococcus aureus subsp. aureus strain 1969.N chromosome, complete genome	9	2214527-2214605	8	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,WYL,csa3,DinG	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	5	2214550-2214582|2214550-2214582|2214550-2214582|2214550-2214582|2214550-2214582	NZ_CP016861.1_208102-208070|NZ_CP016861.1_1579742-1579774|NZ_CP016861.1_2549645-2549677|NZ_CP016861.1_2864193-2864161|NZ_CP016861.1_2774878-2774910	NA	1	1	Orphan	DEDDh,cas3,WYL,csa3,DinG	NA|31aa|up_6|NZ_CP016861.1_2209133_2209226_+,NA|37aa|up_2|NZ_CP016861.1_2212231_2212342_+,NA|138aa|up_1|NZ_CP016861.1_2212370_2212784_+,NA|129aa|down_1|NZ_CP016861.1_2215762_2216149_+,NA|92aa|down_6|NZ_CP016861.1_2220134_2220410_-	NA|177aa|up_9|NZ_CP016861.1_2206449_2206980_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP016861.1_2207226_2208297_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP016861.1_2208364_2208919_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP016861.1_2209133_2209226_+	NA	NA|167aa|up_5|NZ_CP016861.1_2209307_2209808_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP016861.1_2210099_2211413_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP016861.1_2211414_2212146_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP016861.1_2212231_2212342_+	NA	NA|138aa|up_1|NZ_CP016861.1_2212370_2212784_+	NA	NA|329aa|up_0|NZ_CP016861.1_2213273_2214260_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP016861.1_2214787_2215546_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP016861.1_2215762_2216149_+	NA	NA|234aa|down_2|NZ_CP016861.1_2216163_2216865_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP016861.1_2216861_2217905_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP016861.1_2217894_2218524_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP016861.1_2218639_2219857_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP016861.1_2220134_2220410_-	NA	NA|155aa|down_7|NZ_CP016861.1_2220416_2220881_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP016861.1_2221027_2221228_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP016861.1_2221230_2222487_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
